ISMyma2

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Mycobacterium marinum
Mycobacterium marinum 'M'
DNA section
IS Length : 1679 bp

Ends


IR Length : 14/15

IRL : CCCGGATTTTTCGCGGGATGCCGATGTATCTGGGTGTTGCAACGCGAAAG
IRR : CCTCGATTTTTCGCGCTGGTGGGGTTCGGTGGTGCTGGGCCATGAAAATT

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGGCGCGACTAGCGCCCAGGGC4

DNA sequence

CCCGGATTTTTCGCGGGATGCCGATGTATCTGGGTGTTGCAACGCGAAAGTGCCTGTCCTGCAAAGAATGATTGGACTTCTCTACGGTTCAACCATCTCG
ACTGGAAGGCACCTCGCAGGTGAAGAGTATCGCGGCGGCGCGGCGGGTGAAAGTGTCGGCGGACGGCCATGGTGTGGTGTCGCACGCCGGGATGGGGCTG
TTGCGGGAGCTGGCCGATCAAACCGGGTTGTCTGAGCAGGTCACAGGGGCTTTATCCGACACGTACAAGGGGCCGTGGGTGTATGCCCCGGGTGCGGTGT
TCGCCGATCTGGCTGCGGCGGTGGCCGACGGAGCGGACTGCATCCATGGAGTCGGACAACTGTGCGGGGATCGTGAGCATGTGTTCGGGGCCAAAGCCTC
CACCACCACGATGTGGCGGCTGGTCGATGAGCGTATCGACGCTGTTCACCTGCCGAAGGTTCGCGCTGCCCGCGCCGCCGCGCGGGCGACGGCCTGGGCT
GGCGGAGCCGCCCCCGCCCGTGGTCAGCCGCTGTGTATCGATATCGATGCCACGCTGGTCATCGACCATTCCGACAACAAGGCCGACGCGGCGCCGACGT
GGAAGAAGTCCTTTGGCCATCACCCGTTGCTGGCGTTTCTGGACCGCCCGGAGATCGCCGGTGGTGAGGCGTTGGCCGGGCTGCTACGCAAAGGCAACGC
CGGTTCCAACACCGCCGCTGACCACGTCACGGTCCTCGACCAGGCGTTGGACTCGCTACCGGCAGATCGGCGTCCTGACCCCGACGCCGAGGGCGCACCG
GCGGTGGTGGTGCGCTGCGACACCGCCGGGGCCACCCATAAGTTCGCCCAGGCCTGCCGTGATCGCGGGGTCGGGTTCTCCTTCGGGTTTCCCGTCGATG
CCCGGGTCTGGGATGCCGTGGACACCCTCAACCTCGCCGAGGGCTGGTACCCGGCGATCGACGCAGGCGGCGAGATCCGTGACGGGGCGTGGGTGGCCGA
GGCCACTAGTCTGGTCAACCTGTGCACCTGGCCGGCCGGGACCCGGCTGGTGCTGCGAAAAGAGCGCCCGCACCCCGGGGCGCAGCTGCGCTTCACCGAC
ATCGACGGCATGCGCATCACCGCGTTCATCACCGACACCGCCCCCGGTGTCATCCCAGGGCAGTTGGCCGGCCTGGAACTGCGACATCGCCAGCACGCCC
GCGTCGAGGACCGTATCCGCGAGGCCAAAGCCGCTGGCCTGGCCAACCTGCCCTGCCATGGCTTTGACCCCAATGCCGCCTGGCTCGAAATCGTGCTGGC
GGCAGCTGATCTAGTTTCCTGGGCCCAACTGATCGGATTCACCGACACCCCGGAGTTGGCCCGCTGTGAGATCGCCTCGTTCCGCTACCGGGTGCTGCAC
GCCGCCGCCCGCATCACCCGATCAGCCCGGCAACTGCGGCTGCGTATCGACGCCACCTGGCGATGGGCCACAGCGATCGCGACCGCCTGGCGGCGCATCC
GAGCCGCCTTCCCCTGACCGCCACAACCCCGCCCCGACGACCCGAAAGACCACCGGCCCCGGAAAGCCCGCACCCAGCGACACGGGACAGTCAAACACAC
CCCAAAGCCCAAAATCGCCATCACTCAGCAATTTTCATGGCCCAGCACCACCGAACCCCACCAGCGCGAAAAATCGAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1398 bp466 aa1201517+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKSIAAARRVKVSADGHGVVSHAGMGLLRELADQTGLSEQVTGALSDTYKGPWVYAPGAVFADLAAAVADGADCIHGVGQLCGDREHVFGAKASTTTMWR
LVDERIDAVHLPKVRAARAAARATAWAGGAAPARGQPLCIDIDATLVIDHSDNKADAAPTWKKSFGHHPLLAFLDRPEIAGGEALAGLLRKGNAGSNTAA
DHVTVLDQALDSLPADRRPDPDAEGAPAVVVRCDTAGATHKFAQACRDRGVGFSFGFPVDARVWDAVDTLNLAEGWYPAIDAGGEIRDGAWVAEATSLVN
LCTWPAGTRLVLRKERPHPGAQLRFTDIDGMRITAFITDTAPGVIPGQLAGLELRHRQHARVEDRIREAKAAGLANLPCHGFDPNAAWLEIVLAAADLVS
WAQLIGFTDTPELARCEIASFRYRVLHAAARITRSARQLRLRIDATWRWATAIATAWRRIRAAFP

 

Blast result :
Comments
There are eight copies of this element in Mycobacterium marinum 'M'.
ISMyma2 is 58% aa similar to IS1676.
References
1] Stinear T. (2006) Direct submission GenBank.