ISBcen7
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Burkholderia cenocepacia | Burkholderia cenocepacia J2315 |
DNA section
IS Length : 1312 bp
Ends
IR Length : 20/25
IRL : TGACCCATCCTGAAATAGGTTGACACTTTTTCGCCGAGACGAAGAGGTGG
IRR : TGTCAAGTCCTGGAATAGGTTGACAGTATCCAGACGCTAGAACGCCCGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTGTTTTT | TGT | GTCTCGCCCC | 3 |
TTTTTTCGTC | TGT | TGAACACGAT | 3 |
DNA sequence
TGACCCATCCTGAAATAGGTTGACACTTTTTCGCCGAGACGAAGAGGTGGCAAGTGGAGCAAGGGATCAAGCGGACGCAGCGAGATTACAGCCTGGCTTT
TAAGCTGTCAGTGGTGGCGCAGGTCGAAAAAGGCGAACTGACGTACAAAGAGGCGCAGCGGCGCTACGGCATCCAGGGTCGCTCGACGGTGCTGGTATGG
TTACGCAGGCACGGCTTGCAGGATTGGGCCGATCCATCCGGCCGTGCGCAATCGGGTTCCACCATGCCAAAGCCAGACTCAAAGCCGCTCACACCCGAGC
AGCGCATCAAGGAGTTGGAGACGCAGTTGCGAGAGGCGCAGGAGAAAGCGGCGCTATTCGAGGCGGTGCTCGACGTGATGCGCAAGGACTACGGGATCAC
CGTAAAAAAGCCTTCGGGCAGGTCGTCGCGCAAAAGCGGATCGAAAAGCTGAGCGTCGAGCGAGCCTGCCGCTACATGGGCATCAGCCGCCAAGCGTATT
ACAAGCGATGTCGCAGCGAGCAGTGCCGTTGCTCGCAAGCTGAGACCGTGGCGACGCTGGTGCGGGACGTCCGGCTTCGCCAGCCGAGGCTCGGAACACG
AAAGCTGCATCATTTGCTCGGGCCTGCATTGGTGGAGCGTGGGATCAAGCTGGGACGGGATCGGCTGTTCGACGTGCTGCGCGCCGCGCGCCTGCTGGTC
GTGCCGCACCGGGCGTACCACAAGACGACTCAAAGCCATCATCGCTTCCGGCGTCATCCGAATCTGCTGAAACCCGGGCCGGATCAAATCGTGCCGACCG
GCCCCGAACAGGTATGGGTGGCCGACATCACGTACCTGCCGACGGCTGGCCCGTTTGTGTATTTGAGCCTCGTCACGGATGCGTTCTCGCGCAAGATCGT
CGGCCATCACGTTCACGAGAGCCTGCAAACCGAGCAGGTCAGTCAGGCGCTGAAGAAGGCGTTGCGCAGGCGCCAGACCCGCCAGCCCTTGATCCATCAC
TCCGATCGCGGGGTCCAGTACTGCGCGACCTACTACCAGGACATCCATCGGCGTCACGGCTTGCGATGTTCGATGACGGACGGCTACGACTGCTATCAGA
ACGCGCTGGCCGAGCGGGTCAACGGCATTCTCAAGGGCGAGTTCCTGCTGCAACGTCCCGCTGACCTCGAGCAGGCCGCCAAGATGGTCGAACAGTCCAT
CCGCATCTATAACCACGAGCGACCGCATGCTGCGCTGAAATACAAAACGCCCGATGCGGTGCATCGGGCGTTCTAGCGTCTGGATACTGTCAACCTATTC
CAGGACTTGACA
TAAGCTGTCAGTGGTGGCGCAGGTCGAAAAAGGCGAACTGACGTACAAAGAGGCGCAGCGGCGCTACGGCATCCAGGGTCGCTCGACGGTGCTGGTATGG
TTACGCAGGCACGGCTTGCAGGATTGGGCCGATCCATCCGGCCGTGCGCAATCGGGTTCCACCATGCCAAAGCCAGACTCAAAGCCGCTCACACCCGAGC
AGCGCATCAAGGAGTTGGAGACGCAGTTGCGAGAGGCGCAGGAGAAAGCGGCGCTATTCGAGGCGGTGCTCGACGTGATGCGCAAGGACTACGGGATCAC
CGTAAAAAAGCCTTCGGGCAGGTCGTCGCGCAAAAGCGGATCGAAAAGCTGAGCGTCGAGCGAGCCTGCCGCTACATGGGCATCAGCCGCCAAGCGTATT
ACAAGCGATGTCGCAGCGAGCAGTGCCGTTGCTCGCAAGCTGAGACCGTGGCGACGCTGGTGCGGGACGTCCGGCTTCGCCAGCCGAGGCTCGGAACACG
AAAGCTGCATCATTTGCTCGGGCCTGCATTGGTGGAGCGTGGGATCAAGCTGGGACGGGATCGGCTGTTCGACGTGCTGCGCGCCGCGCGCCTGCTGGTC
GTGCCGCACCGGGCGTACCACAAGACGACTCAAAGCCATCATCGCTTCCGGCGTCATCCGAATCTGCTGAAACCCGGGCCGGATCAAATCGTGCCGACCG
GCCCCGAACAGGTATGGGTGGCCGACATCACGTACCTGCCGACGGCTGGCCCGTTTGTGTATTTGAGCCTCGTCACGGATGCGTTCTCGCGCAAGATCGT
CGGCCATCACGTTCACGAGAGCCTGCAAACCGAGCAGGTCAGTCAGGCGCTGAAGAAGGCGTTGCGCAGGCGCCAGACCCGCCAGCCCTTGATCCATCAC
TCCGATCGCGGGGTCCAGTACTGCGCGACCTACTACCAGGACATCCATCGGCGTCACGGCTTGCGATGTTCGATGACGGACGGCTACGACTGCTATCAGA
ACGCGCTGGCCGAGCGGGTCAACGGCATTCTCAAGGGCGAGTTCCTGCTGCAACGTCCCGCTGACCTCGAGCAGGCCGCCAAGATGGTCGAACAGTCCAT
CCGCATCTATAACCACGAGCGACCGCATGCTGCGCTGAAATACAAAACGCCCGATGCGGTGCATCGGGCGTTCTAGCGTCTGGATACTGTCAACCTATTC
CAGGACTTGACA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
396 bp | 132 aa | 54 | 449 | + | No |
Description : First part of the transposase
ORF sequence :
MEQGIKRTQRDYSLAFKLSVVAQVEKGELTYKEAQRRYGIQGRSTVLVWLRRHGLQDWADPSGRAQSGSTMPKPDSKPLTPEQRIKELETQLREAQEKAA
LFEAVLDVMRKDYGITVKKPSGRSSRKSGSKS
LFEAVLDVMRKDYGITVKKPSGRSSRKSGSKS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 388 aa | 104 | 1273 | + | No |
Description : Second part of the transposase
ORF sequence :
AVSGGAGRKRRTDVQRGAAALRHPGLDGAGMVTQARLAGLGRSIRPCAIGFHHAKARLKAAHTRAAHQGVGDAVARGAGESGAIRGGARRDAQGLRDHRK
KAFGVVAQKRIEKLSVERACRYMGISRQAYYKRCRSEQCRCSQAETVATLVRDVRLRQPRLGTRKLHHLLGPALVERGIKLGRDRLFDVLRAARLLVVPH
RAYHKTTQSHHRFRRHPNLLKPGPDQIVPTGPEQVWVADITYLPTAGPFVYLSLVTDAFSRKIVGHHVHESLQTEQVSQALKKALRRRQTRQPLIHHSDR
GVQYCATYYQDIHRRHGLRCSMTDGYDCYQNALAERVNGILKGEFLLQRPADLEQAAKMVEQSIRIYNHERPHAALKYKTPDAVHRAF
KAFGVVAQKRIEKLSVERACRYMGISRQAYYKRCRSEQCRCSQAETVATLVRDVRLRQPRLGTRKLHHLLGPALVERGIKLGRDRLFDVLRAARLLVVPH
RAYHKTTQSHHRFRRHPNLLKPGPDQIVPTGPEQVWVADITYLPTAGPFVYLSLVTDAFSRKIVGHHVHESLQTEQVSQALKKALRRRQTRQPLIHHSDR
GVQYCATYYQDIHRRHGLRCSMTDGYDCYQNALAERVNGILKGEFLLQRPADLEQAAKMVEQSIRIYNHERPHAALKYKTPDAVHRAF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1220 bp | 406 aa | 54 | 1273 | + | Yes |
Chemistry : DDE
ORF sequence :
MEQGIKRTQRDYSLAFKLSVVAQVEKGELTYKEAQRRYGIQGRSTVLVWLRRHGLQDWADPSGRAQSGSTMPKPDSKPLTPEQRIKELETQLREAQEKAA
LFEAVLDVMRKDYGITVKKAFGVVAQKRIEKLSVERACRYMGISRQAYYKRCRSEQCRCSQAETVATLVRDVRLRQPRLGTRKLHHLLGPALVERGIKLG
RDRLFDVLRAARLLVVPHRAYHKTTQSHHRFRRHPNLLKPGPDQIVPTGPEQVWVADITYLPTAGPFVYLSLVTDAFSRKIVGHHVHESLQTEQVSQALK
KALRRRQTRQPLIHHSDRGVQYCATYYQDIHRRHGLRCSMTDGYDCYQNALAERVNGILKGEFLLQRPADLEQAAKMVEQSIRIYNHERPHAALKYKTPD
AVHRAF
LFEAVLDVMRKDYGITVKKAFGVVAQKRIEKLSVERACRYMGISRQAYYKRCRSEQCRCSQAETVATLVRDVRLRQPRLGTRKLHHLLGPALVERGIKLG
RDRLFDVLRAARLLVVPHRAYHKTTQSHHRFRRHPNLLKPGPDQIVPTGPEQVWVADITYLPTAGPFVYLSLVTDAFSRKIVGHHVHESLQTEQVSQALK
KALRRRQTRQPLIHHSDRGVQYCATYYQDIHRRHGLRCSMTDGYDCYQNALAERVNGILKGEFLLQRPADLEQAAKMVEQSIRIYNHERPHAALKYKTPD
AVHRAF
Blast result :
Comments
ISBcen7 is 79% (ORF1) and 77% (ORF2) aa similar to ISPsy11.
2 copies within J2315. Ends defined by inverted repeats, direct repeats and comparing insertion events.
2 copies within J2315. Ends defined by inverted repeats, direct repeats and comparing insertion events.
References
1] The Wellcome Trust Sanger Institute. http://www.sanger.ac.uk
2] Helena Seth-Smith (2006) Direct submission
2] Helena Seth-Smith (2006) Direct submission