ISChy1

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007503 ND Carboxydothermus hydrogenoformans
Carboxydothermus hydrogenoformans Z-2901
DNA section
IS Length : 1728 bp

Ends


Left end : CCTCCTCGTATAATTTAAATTACCATAGAACCCGAGCCGAAAAATTAGGTTAAGGGTTCTTGATAACTTGGCGTGCCTTTGCGAAGATTAAAATAGGTTG
Right end : CAACTATTACCATATAGTTGGAGAGGGTTATTATTGCCTTTTTTAGCCCCTACTTTTCTAATTTCCATTTCTTGGTCCTTGACTTTTTACCGTGAGTCTT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCTCCTCGTATAATTTAAATTACCATAGAACCCGAGCCGAAAAATTAGGTTAAGGGTTCTTGATAACTTGGCGTGCCTTTGCGAAGATTAAAATAGGTTG
GTCCGGGGTCACTCTTAAATACCTCCTGTAGCCCGAGTAAACCCGGTGACTACTCATGTAAGAGTGAGACCCTTGCGGTGCGGCGCATGTTTCTTACGCG
TGAGCTGAGCCAACAGGCCAGCCGGCTTCTGGATTCAGCAGGCCAGAGGTGCACCCCCGGCTGTCCTGCCACGCTCTCATCGCCCCGCGAGGTTGTTACG
CGACGTACCCGCAGGGCACGCCCCTAATTTGGGCCAGCCCAAGGAGGGATACCCTTTGGCCCGGGTCGTTTTTGCAGGCATTGATGTCAGCGCTCTTAAA
TGCGACTTGGTGTGTCTCGATGAGCAAGGGCAACAGCTCGCCCCAGTTAAGTCTTTTCCTAACAGCCTCGAAGGCGCTTCTGCTATGGTTGAGGTGCTGG
ATGGTCTCGCCCATAAGTTTAACATCCAGCAACTTCATATAGGGTTGGAGGCCACCTCTATCTACAGCGTCCATCTCCGTCAGTTCCTCCTGGACTCCCC
AAAGCTTAAGCCATACTCCACCAAGGTCTATGAAATAAACCCCGTCATGGTGGCCAGTTTTAAGAAGGCCTTCGGTACCAAGCGCCCTAAAACAGATGCC
CTCGACGCTTACGTTATCGCAGAACGGGTGCGCTTCGGCCATCTTACCCCTTGTAGCCGGGAAACTATAGTGACTGAACCTTTGCGCCAGCTCACCCGCC
TGCGCCTACACCTCGTGGAAATGGTGACGGCCGAGCAGAACCGAGCCTTAAATCTCCTCTTCCTTAAGTTTTCTAATTATCACCAGGACAAGCCTTTTAG
TCAAACTTTCGGTAAGGCCTCCCTGGCGGTATTACAGGAATTTACACCAGATGAACTTATAGAAATGCCATTGGAAGAGCTGGCAGAGTTCATCCAGTCC
CATGGTAATAACAAATTAGCCTCACCTGAGAATATGGCTAAGGCCCTCAAACAGGCTGCCCGTCGCGCCTACCGCCTTAATCCTAAAATGCTCGCAGCTT
GTGAGGTAGCTCTTTCTCTTACTCTGCAGAATATTGACCACCTCAAAAGGCAGCTTAAACAACTGGATAAAGTCATTTGCCGGGAGTTAGAAGCCATACC
TCAAACTCTGACCAGCGTAAAAGGCCTCGGTCCCATCTCGGCTGCTGGTATTATAGCCGAAATTGGCGATATCAAACGTTTCAAAGATCAAGCCGCTCTG
GCTCAATATGCCGGCCTTACCTGGACCCGCTACCAATCAGGTGATTTTGACGCCGAAGAACGCCGCCTGACAAAAAGTGGCAACCGGTACCTGCGTTACT
ACCTGGTCCAGGCCGCCAACTCGTTGCGGGTGCACAACGAGGAGTATAAGGCCTACTACCAGAGCAAGTATCACGAAGTTACCAAGCATCAACATAAGCG
AGCGCTGGTTCTAACTGCCCGCAAATTAGTAAGGCTGGTCTTTGCCCTGCTGAGCAAAGGCCAAATCTACAAAGGGACGGTGATGAAATAGTTCTTGAAT
AAAACCTTTTCTCTTCTCTGCTATTTTCCAACTATTACCATATAGTTGGAGAGGGTTATTATTGCCTTTTTTAGCCCCTACTTTTCTAATTTCCATTTCT
TGGTCCTTGACTTTTTACCGTGAGTCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1236 bp411 aa3561591+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MARVVFAGIDVSALKCDLVCLDEQGQQLAPVKSFPNSLEGASAMVEVLDGLAHKFNIQQLHIGLEATSIYSVHLRQFLLDSPKLKPYSTKVYEINPVMVA
SFKKAFGTKRPKTDALDAYVIAERVRFGHLTPCSRETIVTEPLRQLTRLRLHLVEMVTAEQNRALNLLFLKFSNYHQDKPFSQTFGKASLAVLQEFTPDE
LIEMPLEELAEFIQSHGNNKLASPENMAKALKQAARRAYRLNPKMLAACEVALSLTLQNIDHLKRQLKQLDKVICRELEAIPQTLTSVKGLGPISAAGII
AEIGDIKRFKDQAALAQYAGLTWTRYQSGDFDAEERRLTKSGNRYLRYYLVQAANSLRVHNEEYKAYYQSKYHEVTKHQHKRALVLTARKLVRLVFALLS
KGQIYKGTVMK

 

Blast result :
Comments
ISChy1 is 48% aa similar to ISFnu4. There are 4 copies in the Carboxydothermus hydrogenoformans Z-2901 genome.
References
1] Wu,M., Ren,Q., Durkin,A.S., Daugherty,S.C., Brinkac,L.M., Dodson,R.J., Madupu,R., Sullivan,S.A., Kolonay,J.F., Nelson,W.C., Tallon,L.J., Jones,K.M., Ulrich,L.E., Gonzalez,J.M., Zhulin,I.B., Robb,F.T. and Eisen,J.A. (2005) PLoS Genet. 1 (5), E65