ISChy1
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007503 | ND | Carboxydothermus hydrogenoformans | Carboxydothermus hydrogenoformans Z-2901 |
DNA section
IS Length : 1728 bp
Ends
Left end : CCTCCTCGTATAATTTAAATTACCATAGAACCCGAGCCGAAAAATTAGGTTAAGGGTTCTTGATAACTTGGCGTGCCTTTGCGAAGATTAAAATAGGTTG
Right end : CAACTATTACCATATAGTTGGAGAGGGTTATTATTGCCTTTTTTAGCCCCTACTTTTCTAATTTCCATTTCTTGGTCCTTGACTTTTTACCGTGAGTCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CCTCCTCGTATAATTTAAATTACCATAGAACCCGAGCCGAAAAATTAGGTTAAGGGTTCTTGATAACTTGGCGTGCCTTTGCGAAGATTAAAATAGGTTG
GTCCGGGGTCACTCTTAAATACCTCCTGTAGCCCGAGTAAACCCGGTGACTACTCATGTAAGAGTGAGACCCTTGCGGTGCGGCGCATGTTTCTTACGCG
TGAGCTGAGCCAACAGGCCAGCCGGCTTCTGGATTCAGCAGGCCAGAGGTGCACCCCCGGCTGTCCTGCCACGCTCTCATCGCCCCGCGAGGTTGTTACG
CGACGTACCCGCAGGGCACGCCCCTAATTTGGGCCAGCCCAAGGAGGGATACCCTTTGGCCCGGGTCGTTTTTGCAGGCATTGATGTCAGCGCTCTTAAA
TGCGACTTGGTGTGTCTCGATGAGCAAGGGCAACAGCTCGCCCCAGTTAAGTCTTTTCCTAACAGCCTCGAAGGCGCTTCTGCTATGGTTGAGGTGCTGG
ATGGTCTCGCCCATAAGTTTAACATCCAGCAACTTCATATAGGGTTGGAGGCCACCTCTATCTACAGCGTCCATCTCCGTCAGTTCCTCCTGGACTCCCC
AAAGCTTAAGCCATACTCCACCAAGGTCTATGAAATAAACCCCGTCATGGTGGCCAGTTTTAAGAAGGCCTTCGGTACCAAGCGCCCTAAAACAGATGCC
CTCGACGCTTACGTTATCGCAGAACGGGTGCGCTTCGGCCATCTTACCCCTTGTAGCCGGGAAACTATAGTGACTGAACCTTTGCGCCAGCTCACCCGCC
TGCGCCTACACCTCGTGGAAATGGTGACGGCCGAGCAGAACCGAGCCTTAAATCTCCTCTTCCTTAAGTTTTCTAATTATCACCAGGACAAGCCTTTTAG
TCAAACTTTCGGTAAGGCCTCCCTGGCGGTATTACAGGAATTTACACCAGATGAACTTATAGAAATGCCATTGGAAGAGCTGGCAGAGTTCATCCAGTCC
CATGGTAATAACAAATTAGCCTCACCTGAGAATATGGCTAAGGCCCTCAAACAGGCTGCCCGTCGCGCCTACCGCCTTAATCCTAAAATGCTCGCAGCTT
GTGAGGTAGCTCTTTCTCTTACTCTGCAGAATATTGACCACCTCAAAAGGCAGCTTAAACAACTGGATAAAGTCATTTGCCGGGAGTTAGAAGCCATACC
TCAAACTCTGACCAGCGTAAAAGGCCTCGGTCCCATCTCGGCTGCTGGTATTATAGCCGAAATTGGCGATATCAAACGTTTCAAAGATCAAGCCGCTCTG
GCTCAATATGCCGGCCTTACCTGGACCCGCTACCAATCAGGTGATTTTGACGCCGAAGAACGCCGCCTGACAAAAAGTGGCAACCGGTACCTGCGTTACT
ACCTGGTCCAGGCCGCCAACTCGTTGCGGGTGCACAACGAGGAGTATAAGGCCTACTACCAGAGCAAGTATCACGAAGTTACCAAGCATCAACATAAGCG
AGCGCTGGTTCTAACTGCCCGCAAATTAGTAAGGCTGGTCTTTGCCCTGCTGAGCAAAGGCCAAATCTACAAAGGGACGGTGATGAAATAGTTCTTGAAT
AAAACCTTTTCTCTTCTCTGCTATTTTCCAACTATTACCATATAGTTGGAGAGGGTTATTATTGCCTTTTTTAGCCCCTACTTTTCTAATTTCCATTTCT
TGGTCCTTGACTTTTTACCGTGAGTCTT
GTCCGGGGTCACTCTTAAATACCTCCTGTAGCCCGAGTAAACCCGGTGACTACTCATGTAAGAGTGAGACCCTTGCGGTGCGGCGCATGTTTCTTACGCG
TGAGCTGAGCCAACAGGCCAGCCGGCTTCTGGATTCAGCAGGCCAGAGGTGCACCCCCGGCTGTCCTGCCACGCTCTCATCGCCCCGCGAGGTTGTTACG
CGACGTACCCGCAGGGCACGCCCCTAATTTGGGCCAGCCCAAGGAGGGATACCCTTTGGCCCGGGTCGTTTTTGCAGGCATTGATGTCAGCGCTCTTAAA
TGCGACTTGGTGTGTCTCGATGAGCAAGGGCAACAGCTCGCCCCAGTTAAGTCTTTTCCTAACAGCCTCGAAGGCGCTTCTGCTATGGTTGAGGTGCTGG
ATGGTCTCGCCCATAAGTTTAACATCCAGCAACTTCATATAGGGTTGGAGGCCACCTCTATCTACAGCGTCCATCTCCGTCAGTTCCTCCTGGACTCCCC
AAAGCTTAAGCCATACTCCACCAAGGTCTATGAAATAAACCCCGTCATGGTGGCCAGTTTTAAGAAGGCCTTCGGTACCAAGCGCCCTAAAACAGATGCC
CTCGACGCTTACGTTATCGCAGAACGGGTGCGCTTCGGCCATCTTACCCCTTGTAGCCGGGAAACTATAGTGACTGAACCTTTGCGCCAGCTCACCCGCC
TGCGCCTACACCTCGTGGAAATGGTGACGGCCGAGCAGAACCGAGCCTTAAATCTCCTCTTCCTTAAGTTTTCTAATTATCACCAGGACAAGCCTTTTAG
TCAAACTTTCGGTAAGGCCTCCCTGGCGGTATTACAGGAATTTACACCAGATGAACTTATAGAAATGCCATTGGAAGAGCTGGCAGAGTTCATCCAGTCC
CATGGTAATAACAAATTAGCCTCACCTGAGAATATGGCTAAGGCCCTCAAACAGGCTGCCCGTCGCGCCTACCGCCTTAATCCTAAAATGCTCGCAGCTT
GTGAGGTAGCTCTTTCTCTTACTCTGCAGAATATTGACCACCTCAAAAGGCAGCTTAAACAACTGGATAAAGTCATTTGCCGGGAGTTAGAAGCCATACC
TCAAACTCTGACCAGCGTAAAAGGCCTCGGTCCCATCTCGGCTGCTGGTATTATAGCCGAAATTGGCGATATCAAACGTTTCAAAGATCAAGCCGCTCTG
GCTCAATATGCCGGCCTTACCTGGACCCGCTACCAATCAGGTGATTTTGACGCCGAAGAACGCCGCCTGACAAAAAGTGGCAACCGGTACCTGCGTTACT
ACCTGGTCCAGGCCGCCAACTCGTTGCGGGTGCACAACGAGGAGTATAAGGCCTACTACCAGAGCAAGTATCACGAAGTTACCAAGCATCAACATAAGCG
AGCGCTGGTTCTAACTGCCCGCAAATTAGTAAGGCTGGTCTTTGCCCTGCTGAGCAAAGGCCAAATCTACAAAGGGACGGTGATGAAATAGTTCTTGAAT
AAAACCTTTTCTCTTCTCTGCTATTTTCCAACTATTACCATATAGTTGGAGAGGGTTATTATTGCCTTTTTTAGCCCCTACTTTTCTAATTTCCATTTCT
TGGTCCTTGACTTTTTACCGTGAGTCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 356 | 1591 | + | No |
Chemistry : DEDD
ORF sequence :
MARVVFAGIDVSALKCDLVCLDEQGQQLAPVKSFPNSLEGASAMVEVLDGLAHKFNIQQLHIGLEATSIYSVHLRQFLLDSPKLKPYSTKVYEINPVMVA
SFKKAFGTKRPKTDALDAYVIAERVRFGHLTPCSRETIVTEPLRQLTRLRLHLVEMVTAEQNRALNLLFLKFSNYHQDKPFSQTFGKASLAVLQEFTPDE
LIEMPLEELAEFIQSHGNNKLASPENMAKALKQAARRAYRLNPKMLAACEVALSLTLQNIDHLKRQLKQLDKVICRELEAIPQTLTSVKGLGPISAAGII
AEIGDIKRFKDQAALAQYAGLTWTRYQSGDFDAEERRLTKSGNRYLRYYLVQAANSLRVHNEEYKAYYQSKYHEVTKHQHKRALVLTARKLVRLVFALLS
KGQIYKGTVMK
SFKKAFGTKRPKTDALDAYVIAERVRFGHLTPCSRETIVTEPLRQLTRLRLHLVEMVTAEQNRALNLLFLKFSNYHQDKPFSQTFGKASLAVLQEFTPDE
LIEMPLEELAEFIQSHGNNKLASPENMAKALKQAARRAYRLNPKMLAACEVALSLTLQNIDHLKRQLKQLDKVICRELEAIPQTLTSVKGLGPISAAGII
AEIGDIKRFKDQAALAQYAGLTWTRYQSGDFDAEERRLTKSGNRYLRYYLVQAANSLRVHNEEYKAYYQSKYHEVTKHQHKRALVLTARKLVRLVFALLS
KGQIYKGTVMK
Blast result :
Comments
ISChy1 is 48% aa similar to ISFnu4. There are 4 copies in the Carboxydothermus hydrogenoformans Z-2901 genome.
References
1] Wu,M., Ren,Q., Durkin,A.S., Daugherty,S.C., Brinkac,L.M., Dodson,R.J., Madupu,R., Sullivan,S.A., Kolonay,J.F., Nelson,W.C., Tallon,L.J., Jones,K.M., Ulrich,L.E., Gonzalez,J.M., Zhulin,I.B., Robb,F.T. and Eisen,J.A. (2005) PLoS Genet. 1 (5), E65