ISSto1

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii
DNA section
IS Length : 1799 bp

Ends


Left end : AAAACGCGGGGCAGCCTCGCCTTTTAAGGCGGGGTAAAGTTTAAAAATTATTTTGAATACTTTAAAGTGTGGAATACAAATCAACTAGGCATGCAAAGTA II struct. : Yes
Right end : CACCCACTAACTATGAAGTTGTGAGGATGAAGGTGGTAAACCACAAACCTATGAACCGCCCTAAGGGAACCCTCGCCCTTTAGGGCGAGGAGGAGGTCAG II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACTTCTTTACACTTTTTAATGACTTAGTCGATAATAGAGTACTAGGGTCAG
ATAGAATCCTATACGGATCTGACTCAGTATGCAATATGGAATCCCAAATGTCAG

DNA sequence

AAAACGCGGGGCAGCCTCGCCTTTTAAGGCGGGGTAAAGTTTAAAAATTATTTTGAATACTTTAAAGTGTGGAATACAAATCAACTAGGCATGCAAAGTA
CCTCTGCAACTACCACTTCGTATGGATACCGAAATACCGTAGGAAAGTGTTAACAGGCGAAATAGCTGAATACACTAAAGAGGTACTAAGAACCATAGCA
GAAGAGTTGGGCTGTGAAGTATTAGCCCTAGAAGTAATGCCAGACCACATCCACCTATTCGTTAACTGCCCACCGAGATACGCACCGTCATATTTAGCAA
ACTACTTCAAAGGAAAATCAGCAAGACTAATACTCAAGAAGTTCCCAGAGCTGAAGAAAGCTACTAACGGGAAGCTCTGGACTAGAAGCTACTTCGTATC
GACTTCTGGTAACATATCCAGCGAGACGATAAAGAAGTACATTGAAGAACAGTGGGTGAAAGAGGGTGAAGAGGACTAACGTAGTTAAACTAATAGTAGA
CAAGCAAACCCACGAAAGACTGAAGGAGTTGGCTATTACCACAGCGAAGTGTTGGAACGAAGTGAACTGGTTAAGGATGCAACAGTACAAGGAAGGGGAG
AGAGTAGACTTTGCTAAGACAGAAAAGGAGGTGTACGAGAAGTACAAACACGTGTTAAAGGTTAACGTTCAACAAGTTGCTAGAAAGAACGCTGAGGACT
GGAGAAGCTTCTTCTCCCTAATCGAAGAGAAGAAGGAGGGAAAATTACCAAAGTGGTTTAAACCAAGACCTCCAGGGTATTGGAAAGATAAAAGTGGAAA
TTATAAACTAATCCTAATCATTAGGAACGATCGTTATGAGGTGGATGAGAACAAGAGGATCATCTATTTGAAGGACTTCAAACTCTCTCTGAGGTTTAAG
GGGAAACTCAAGTGGCACGGGAAACAAGGTAGATTAGAAATAATTTACAACGAAGCTAAGAGGAGTTGGTATGCTCATATTCCAGTGGAGGTTGAAAGTG
AAACGAAAGTTGAGGGCAATCTGAGGGCTTCTGTTGATTTAGGAATCATCAATTTAGCAACAGTTTACGTAGAAGATGGTAATTGGTACCTTTTCAAGGG
TGGTAGTGTTCTTTCACAGTATGAGTATTATAGCAAGAAGATACGAATCGTTCAGAAGACCTTAGCGAGGCATAAGCAGAATAGGAGTAAGAAGCTGAAA
CTCCTCTACGAGAATAGGAGTAGGTTCCTCAAACACGCTTTAAACAGTATGGTTAGGAAAGTAGTGGAGCTGTTGAAGGACAAACGGGTAAGCGAGGTTG
TTATAGGTTATCCTAAAGAGATTAATAGGAACCACGGTAATAAACTCACTGTAAACTTCTGGAACTACAGGTATGTTATTAAGCGTTTTGAGGAGATTGG
GGAAGAACTAGGAATTAGGGTTGTTAAAGTGGATGAATCTTATACTTCTAAGACGTGCTCCCTATGCGGGGAAGCCCACGAAAGTGGGCGTGTTAAACGC
GGCCTATTTAAGTGTCCCCGCATAGGGAAAGTGATAAACGCAGACCTGAATGGAGCGATAAATATCCTACATATCCCCGAGTCCCTAGGATCTGGGAGTG
GAGGGCAACTCCCAGTGAGGGATAGGGGTAATGGGCTGAAGACCCAGCCCGTGGTCTACCGCTGGACGAACGGAGCGGGGTGGGTGCTTTACGCACCCAC
TAACTATGAAGTTGTGAGGATGAAGGTGGTAAACCACAAACCTATGAACCGCCCTAAGGGAACCCTCGCCCTTTAGGGCGAGGAGGAGGTCAG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
411 bp136 aa75485+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MEYKSTRHAKYLCNYHFVWIPKYRRKVLTGEIAEYTKEVLRTIAEELGCEVLALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFPELKKATN
GKLWTRSYFVSTSGNISSETIKKYIEEQWVKEGEED

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1311 bp436 aa4721782+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKRTNVVKLIVDKQTHERLKELAITTAKCWNEVNWLRMQQYKEGERVDFAKTEKEVYEKYKHVLKVNVQQVARKNAEDWRSFFSLIEEKKEGKLPKWFKP
RPPGYWKDKSGNYKLILIIRNDRYEVDENKRIIYLKDFKLSLRFKGKLKWHGKQGRLEIIYNEAKRSWYAHIPVEVESETKVEGNLRASVDLGIINLATV
YVEDGNWYLFKGGSVLSQYEYYSKKIRIVQKTLARHKQNRSKKLKLLYENRSRFLKHALNSMVRKVVELLKDKRVSEVVIGYPKEINRNHGNKLTVNFWN
YRYVIKRFEEIGEELGIRVVKVDESYTSKTCSLCGEAHESGRVKRGLFKCPRIGKVINADLNGAINILHIPESLGSGSGGQLPVRDRGNGLKTQPVVYRW
TNGAGWVLYAPTNYEVVRMKVVNHKPMNRPKGTLAL

 

Blast result :
Comments
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140