ISNsp2
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003272 | ND | Nostoc sp. | Nostoc sp. PCC 7120 |
DNA section
IS Length : 1718 bp
Ends
Left end : GAGTCGTGATGCGTAAAGCCCCCAATTATGAGGGACAAAACCAATAAGTTTTGTCCCTCATACGTCTTTTAAGTGGGGGATATAAGCTTTGGAGGATGAA II struct. : Yes
Right end : GGGAGTTCGACTCTAGGCGTAGGAGATGTTAGACAGTCCCAGACTGCAATCTCTGTCTGATGCCTGAATCCCCCGTTTTCAAAACGGGGGAGTGGCTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAAATCCTGTTTCTAAGTC | TTAC | GGCTTACCTCTGTCCACGA | tcaa |
DNA sequence
GAGTCGTGATGCGTAAAGCCCCCAATTATGAGGGACAAAACCAATAAGTTTTGTCCCTCATACGTCTTTTAAGTGGGGGATATAAGCTTTGGAGGATGAA
TTTATTCATCCGTGATGCGGGTCATTTATGTACTCTAAGACTTTCTGGGTGCTAACTTTCCCTGTAGTGTCAAACATATACGAATGTGTCCACAAACTAG
GTAATCTCATTAACTCTGGAAACTCTTGTCGCAAATATCTTGATGACCTACCCTTAAATGCTTTAACTATTTGAGATATTGAATGATGCGGGTCATATTC
AACCAATAAATGAATATGGTCAGGGGCAATTTCTAGTGCTTTGATAATCCATCTTTTATCATTAGCAACTGACTGAAATATCTCAATACATCGTAATTTT
AATTTTTCATTATTAGCAAAAACCCTCCTACGTCTACATGGTATCCAAACTAAATGAACAGTAGCCAATCCGATTGCGTGGTTGTAGTGATTATATACAG
ATTTCATGTAGATGAGTATTGATTATCTACACTACTAATGATATCATAACCACATGAAAACCTTGAAGTTCAAACTGTACCAGCACAAAAGAAATAGATT
TCTCAAACGCATGATTAATGCAGGTGGGGCAATCTACAACCATTGTATTGCTCTACATAAACGCTACTATCGTATGTGGGGCAAACACTTAAACTGTGCA
AAACTTCAAGCTCATATTGCCAAACTGAGAAAGCGTAACCCATTTTGGCAAACAGTAGGTTCTCAGGCGGTACAAGATATTTGTCAACGCATTGAGAAAG
CCTACCAATTATTTTTTAAACACAACAAGAAGGGGGTTAGACCACCAGGATTTAAGAAGGTAAAAAAATACAAATCATTTACTCTAAAACAAGCAGGTTA
TAAGTTTTTGGATGGAAATAGAGTAAAAATTGGGAGTAAAATTTATCAGTTTTGGAAGTCTAGAGAAATTGAGGGGACAGTCAAAACATTAACTATTAAA
CGCACACCATTAGGTGAGTTGTTTATGGTTGTGGTGGTTGACGAAGGTAACAAGCCAGAAACCAAATTCATGACTGGTAAGATAGCGGGATTTGATTTCG
GTTTAAAAACCTTTCTCACTTGCTCAGACGGTACAACAATTGAGTCTCCCCAGTTTTTTAAGCAATCCCTAAATGCAATTAAAAAAGCCAGCCGACAGCA
TTCTAAGAAATTAAAAGGTTCAGCCAATCGTGAGCAAGCTAGAAAGAACTTAGTACGCAGGTATGAAGATATCTTTAACCGTCGTCGTGATTGGTTCTGG
AAGTTAGCCCATGAGTTAACGGATAAATTTGATGTTCTCTGTTTTGAAACCTTAAACCTTAAAGGAATGCAACGACTTTGGGGAAGGAAAATATCAGACT
TGGCTTTTGGTGAATTACTGCAAATTCTAGAATGGGTTGCCAAAAACAAGAATAAACTGGTTGTTTTCATTGACCCGTGGTATCCCAGTAGCAAAACCTG
CTCTAGCTGTGGACATATTTTAGAAAACCTAGATTTGTCAATTAGACGCTGGCGTTGTCCTTCATGTCAATCTGAAAATGATCGGGATGGAAACGCTAGT
TTGAATATTAAAAGAGTCGGGAGTTCGACTCTAGGCGTAGGAGATGTTAGACAGTCCCAGACTGCAATCTCTGTCTGATGCCTGAATCCCCCGTTTTCAA
AACGGGGGAGTGGCTCAA
TTTATTCATCCGTGATGCGGGTCATTTATGTACTCTAAGACTTTCTGGGTGCTAACTTTCCCTGTAGTGTCAAACATATACGAATGTGTCCACAAACTAG
GTAATCTCATTAACTCTGGAAACTCTTGTCGCAAATATCTTGATGACCTACCCTTAAATGCTTTAACTATTTGAGATATTGAATGATGCGGGTCATATTC
AACCAATAAATGAATATGGTCAGGGGCAATTTCTAGTGCTTTGATAATCCATCTTTTATCATTAGCAACTGACTGAAATATCTCAATACATCGTAATTTT
AATTTTTCATTATTAGCAAAAACCCTCCTACGTCTACATGGTATCCAAACTAAATGAACAGTAGCCAATCCGATTGCGTGGTTGTAGTGATTATATACAG
ATTTCATGTAGATGAGTATTGATTATCTACACTACTAATGATATCATAACCACATGAAAACCTTGAAGTTCAAACTGTACCAGCACAAAAGAAATAGATT
TCTCAAACGCATGATTAATGCAGGTGGGGCAATCTACAACCATTGTATTGCTCTACATAAACGCTACTATCGTATGTGGGGCAAACACTTAAACTGTGCA
AAACTTCAAGCTCATATTGCCAAACTGAGAAAGCGTAACCCATTTTGGCAAACAGTAGGTTCTCAGGCGGTACAAGATATTTGTCAACGCATTGAGAAAG
CCTACCAATTATTTTTTAAACACAACAAGAAGGGGGTTAGACCACCAGGATTTAAGAAGGTAAAAAAATACAAATCATTTACTCTAAAACAAGCAGGTTA
TAAGTTTTTGGATGGAAATAGAGTAAAAATTGGGAGTAAAATTTATCAGTTTTGGAAGTCTAGAGAAATTGAGGGGACAGTCAAAACATTAACTATTAAA
CGCACACCATTAGGTGAGTTGTTTATGGTTGTGGTGGTTGACGAAGGTAACAAGCCAGAAACCAAATTCATGACTGGTAAGATAGCGGGATTTGATTTCG
GTTTAAAAACCTTTCTCACTTGCTCAGACGGTACAACAATTGAGTCTCCCCAGTTTTTTAAGCAATCCCTAAATGCAATTAAAAAAGCCAGCCGACAGCA
TTCTAAGAAATTAAAAGGTTCAGCCAATCGTGAGCAAGCTAGAAAGAACTTAGTACGCAGGTATGAAGATATCTTTAACCGTCGTCGTGATTGGTTCTGG
AAGTTAGCCCATGAGTTAACGGATAAATTTGATGTTCTCTGTTTTGAAACCTTAAACCTTAAAGGAATGCAACGACTTTGGGGAAGGAAAATATCAGACT
TGGCTTTTGGTGAATTACTGCAAATTCTAGAATGGGTTGCCAAAAACAAGAATAAACTGGTTGTTTTCATTGACCCGTGGTATCCCAGTAGCAAAACCTG
CTCTAGCTGTGGACATATTTTAGAAAACCTAGATTTGTCAATTAGACGCTGGCGTTGTCCTTCATGTCAATCTGAAAATGATCGGGATGGAAACGCTAGT
TTGAATATTAAAAGAGTCGGGAGTTCGACTCTAGGCGTAGGAGATGTTAGACAGTCCCAGACTGCAATCTCTGTCTGATGCCTGAATCCCCCGTTTTCAA
AACGGGGGAGTGGCTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
402 bp | 133 aa | 507 | 106 | - | No |
Chemistry : Y1
ORF sequence :
MKSVYNHYNHAIGLATVHLVWIPCRRRRVFANNEKLKLRCIEIFQSVANDKRWIIKALEIAPDHIHLLVEYDPHHSISQIVKAFKGRSSRYLRQEFPELM
RLPSLWTHSYMFDTTGKVSTQKVLEYINDPHHG
RLPSLWTHSYMFDTTGKVSTQKVLEYINDPHHG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1125 bp | 374 aa | 554 | 1678 | + | No |
AG : TnpB
ORF sequence :
MKTLKFKLYQHKRNRFLKRMINAGGAIYNHCIALHKRYYRMWGKHLNCAKLQAHIAKLRKRNPFWQTVGSQAVQDICQRIEKAYQLFFKHNKKGVRPPGF
KKVKKYKSFTLKQAGYKFLDGNRVKIGSKIYQFWKSREIEGTVKTLTIKRTPLGELFMVVVVDEGNKPETKFMTGKIAGFDFGLKTFLTCSDGTTIESPQ
FFKQSLNAIKKASRQHSKKLKGSANREQARKNLVRRYEDIFNRRRDWFWKLAHELTDKFDVLCFETLNLKGMQRLWGRKISDLAFGELLQILEWVAKNKN
KLVVFIDPWYPSSKTCSSCGHILENLDLSIRRWRCPSCQSENDRDGNASLNIKRVGSSTLGVGDVRQSQTAISV
KKVKKYKSFTLKQAGYKFLDGNRVKIGSKIYQFWKSREIEGTVKTLTIKRTPLGELFMVVVVDEGNKPETKFMTGKIAGFDFGLKTFLTCSDGTTIESPQ
FFKQSLNAIKKASRQHSKKLKGSANREQARKNLVRRYEDIFNRRRDWFWKLAHELTDKFDVLCFETLNLKGMQRLWGRKISDLAFGELLQILEWVAKNKN
KLVVFIDPWYPSSKTCSSCGHILENLDLSIRRWRCPSCQSENDRDGNASLNIKRVGSSTLGVGDVRQSQTAISV
Blast result :
Comments
ORF A coordinates are complement (106-507). ISNsp2 is 55% aa (ORF A) and 61% aa (ORF B) similar to IS608.
References
1] Kaneko,T., Nakamura,Y., Wolk,C.P., Kuritz,T., Sasamoto,S., Watanabe,A., Iriguchi,M., Ishikawa,A., Kawashima,K., Kimura,T., Kishida,Y., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takazawa,M., Yamada,M., Yasuda,M. and Tabata,S. (2001) DNA Res. 8 (5), 205-213