ISSto8
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003106 | ND | Sulfolobus tokodaii | Sulfolobus tokodaii 7 |
DNA section
IS Length : 1361 bp
Ends
IR Length : 21
IRL : CAGTATGGGAATCTCTTTTTTAGCGTAAAAAACGAGATGAATAAAATTCA
IRR : CAGTATGGGAATCTCTTTTTTCTGAGATAAATGATAACATTAGCCAAAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CAGTATGGGAATCTCTTTTTTAGCGTAAAAAACGAGATGAATAAAATTCAGAAAAGAGTCAGAAGAACGCTAATTTTTGTAGAAAATTTTGTATATTAGA
GGGCGGACCTTAACATATGAAGGGGAATGAAGACAAAGGGACTAAATCCTACAATAGGGACTTCGTCCGGTCCGCCCTCAAACTAATCTACACCTTTCTA
ACTAATATACTTTTCCCCGAAGAACTCCTCAAAACCTTACTTAAAGCTAGAGGAACCTACTTGAGTAGGCTTGGGAACGAGGGGAGGAGAGCATTAAAGC
TCTTGAACAATATTGATGTTGATGATGTTAGAAAGGCATTAAGGGAGATGGGTAAGAAAGTCTTGAGGGAGACTAGGAATAGGAGAGTTGCTATTGACCT
CCATTCCCAACCACAGTACCACAAGGATAAGAGTTTATTGAGTAGGATTAAGCCTAATAAGGGTACTTCTTGGGGTCTCGCTCAAATTGCAATTTTCCTC
TTGAATAGGAAGAGTATTTTCCTTGATGTTTTACCTATAACTGTGAAAAATATTGCTGAGGATTTTAAGATGGTTATGCAAGTTGTTTTGGAGGAGTTGG
ACAAGTTTGATCTTAGGCTTGTTAGGGTTTATGCTGATAGGGAGTTTGCGGTGAATGAGGTTATTAAGTTTCTCTTGGGTCTTGGCGTGGATTTTGTTAT
TACCGCTAGGTATCAGATGTACAAGAAGTATGAGGATAAGTTGAGGGATGTTGATATTACTTATTGTGGTGTTAGGTATACTGGTTTTCTTTGTGTTAGG
CATGTTAGTGGTGCTTATCTTGTTATTTTGAGGAAGGGGGATGGGATTATAGCTTTTCTTGTTAGTGGTGAGGTTGATGTTAGGACTGCTGTTGTTTTGG
CTGAGGATTATAGGGAGAGGTGGGGTGTTGAGAATGCTTTTCGTTCGCTAGAGGAGTTTAGGGTTAGGACTAGGACTTGTGATGTTAGGAAGGAGTTGGT
TCTTATTCTCCTCTGTTATTTTCTTTTGAATGTTTGGTTTTTGGTTCGTTCTTGGAGGAGGGTGAGGTTGTGGGAGTTCTGTCAGTCTCTCGTTGATTTT
CTAGTCCTCAAGGAGATGAGGGAAGTTATTACACAAGGTTTACCTCAAGTTGGGGAGTTATTTTTCGTGAACTTCAGCTGACTCTATGCAACCCTTTTTA
ACCACGTGAAATTAATTCAATATTTCCTCTTTTTTTAATAAAAATTGATTTAATTATACTCTATATTATAAAATATATGTGGTCTTATTTGAATGGTACT
GGTTTTGCTCAATTTTGGCTAATGTTATCATTTATCTCAGAAAAAAGAGATTCCCATACTG
GGGCGGACCTTAACATATGAAGGGGAATGAAGACAAAGGGACTAAATCCTACAATAGGGACTTCGTCCGGTCCGCCCTCAAACTAATCTACACCTTTCTA
ACTAATATACTTTTCCCCGAAGAACTCCTCAAAACCTTACTTAAAGCTAGAGGAACCTACTTGAGTAGGCTTGGGAACGAGGGGAGGAGAGCATTAAAGC
TCTTGAACAATATTGATGTTGATGATGTTAGAAAGGCATTAAGGGAGATGGGTAAGAAAGTCTTGAGGGAGACTAGGAATAGGAGAGTTGCTATTGACCT
CCATTCCCAACCACAGTACCACAAGGATAAGAGTTTATTGAGTAGGATTAAGCCTAATAAGGGTACTTCTTGGGGTCTCGCTCAAATTGCAATTTTCCTC
TTGAATAGGAAGAGTATTTTCCTTGATGTTTTACCTATAACTGTGAAAAATATTGCTGAGGATTTTAAGATGGTTATGCAAGTTGTTTTGGAGGAGTTGG
ACAAGTTTGATCTTAGGCTTGTTAGGGTTTATGCTGATAGGGAGTTTGCGGTGAATGAGGTTATTAAGTTTCTCTTGGGTCTTGGCGTGGATTTTGTTAT
TACCGCTAGGTATCAGATGTACAAGAAGTATGAGGATAAGTTGAGGGATGTTGATATTACTTATTGTGGTGTTAGGTATACTGGTTTTCTTTGTGTTAGG
CATGTTAGTGGTGCTTATCTTGTTATTTTGAGGAAGGGGGATGGGATTATAGCTTTTCTTGTTAGTGGTGAGGTTGATGTTAGGACTGCTGTTGTTTTGG
CTGAGGATTATAGGGAGAGGTGGGGTGTTGAGAATGCTTTTCGTTCGCTAGAGGAGTTTAGGGTTAGGACTAGGACTTGTGATGTTAGGAAGGAGTTGGT
TCTTATTCTCCTCTGTTATTTTCTTTTGAATGTTTGGTTTTTGGTTCGTTCTTGGAGGAGGGTGAGGTTGTGGGAGTTCTGTCAGTCTCTCGTTGATTTT
CTAGTCCTCAAGGAGATGAGGGAAGTTATTACACAAGGTTTACCTCAAGTTGGGGAGTTATTTTTCGTGAACTTCAGCTGACTCTATGCAACCCTTTTTA
ACCACGTGAAATTAATTCAATATTTCCTCTTTTTTTAATAAAAATTGATTTAATTATACTCTATATTATAAAATATATGTGGTCTTATTTGAATGGTACT
GGTTTTGCTCAATTTTGGCTAATGTTATCATTTATCTCAGAAAAAAGAGATTCCCATACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1065 bp | 354 aa | 117 | 1181 | + | No |
Description :
ORF sequence :
MKGNEDKGTKSYNRDFVRSALKLIYTFLTNILFPEELLKTLLKARGTYLSRLGNEGRRALKLLNNIDVDDVRKALREMGKKVLRETRNRRVAIDLHSQPQ
YHKDKSLLSRIKPNKGTSWGLAQIAIFLLNRKSIFLDVLPITVKNIAEDFKMVMQVVLEELDKFDLRLVRVYADREFAVNEVIKFLLGLGVDFVITARYQ
MYKKYEDKLRDVDITYCGVRYTGFLCVRHVSGAYLVILRKGDGIIAFLVSGEVDVRTAVVLAEDYRERWGVENAFRSLEEFRVRTRTCDVRKELVLILLC
YFLLNVWFLVRSWRRVRLWEFCQSLVDFLVLKEMREVITQGLPQVGELFFVNFS
YHKDKSLLSRIKPNKGTSWGLAQIAIFLLNRKSIFLDVLPITVKNIAEDFKMVMQVVLEELDKFDLRLVRVYADREFAVNEVIKFLLGLGVDFVITARYQ
MYKKYEDKLRDVDITYCGVRYTGFLCVRHVSGAYLVILRKGDGIIAFLVSGEVDVRTAVVLAEDYRERWGVENAFRSLEEFRVRTRTCDVRKELVLILLC
YFLLNVWFLVRSWRRVRLWEFCQSLVDFLVLKEMREVITQGLPQVGELFFVNFS
Blast result :
Comments
ISSto8 is 84% aa similar to ISC1439.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140