ISMma4

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003901 ND Methanosarcina mazei
Methanosarcina mazei Go1
DNA section
IS Length : 1719 bp

Ends


IR Length : 17/20

IRL : CCTGCTTTCGGCAGGTAAACCTATAAATTAATATCATTAATTTTATATCT
IRR : CCTACATTCGGCAGGTTAACGTAATTAGAGATATATATTTTCATATTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTCCGATTTTTTTATAAAAGCAACCTCCTCATAT6

DNA sequence

CCTGCTTTCGGCAGGTAAACCTATAAATTAATATCATTAATTTTATATCTCTCTCTTGGTAATCCCATGGCAGAGAAAAACAGCAGTAGAAGAGTCGAAT
CCTCCTTAAAACGTACAAGGTTCTTAGGTCACCTCGGTCTTATGGCTGGAGTTTTCCGAGAACTTGAAGTTGACAAACTGATCGATGAGAAACTTCCTAA
AGAACGGAATCATAATGTTCCTCACTCAGTCTGCATCCTTGCCATGGTACTCAATGGCCTTGGTTTTATAGGGCAACGTCTGTACCTGTTTCCTGATTTT
TTCAAAAACGTTTCTACTGAAAGGCTCTTTGGAGACGGTATAATAAAAGAAGACCTGAATCAATATGCTATCGGAGAGACTCTTGACAGAATCGTAAAAT
ATGGCCCTACAAAACTGTTTACGGAAATTGCTCTTCACATTATGGCTCGTCTACCTATTCCTGTCCACTGTTTACACGCTGACACTACAAGTGTCAGCGT
TTTTGGTGATTATGACGACGAAGAAACTGAGTCTATTGATATTACTTTTGGAATTCCTAAAAACGGACGATGGGATCTCAAACAATTTGTGTTGAGCTTG
ATTGTTAATCAACATGGGATACCTCTTTTCATGAATACACATTCAGGAAATGCTTCAGACAAAAACACAATTCTGGAAGCAATAACGTCTCTCAAATCAG
TTTTAAGACCTGAAAGCAAAGTTTACTATGTCGCTGATAGTTCCTTTTATACAGACAATAATATCCAGAACATAGGGACGTCTTTCTGGATAAGTCGTGT
TCCTGCAACAATTACCGAGGCAAAGGAACTGCTAGCTGCAAATCTGAACCTGCAAAAGCTAAAAAGTGATGAGAGGTACTCATTCTATCAAACCTTTGTG
GAATATGGCGGAATCAAACAAAAGTGGGTTTTGTTGCTTTCTCACAAGATGAAAGAGAAGAAAGAGGGAACTTTCAGGACGAAGCTTGACAAAGAGGTAG
AAAAAGCAGAGAAGTCTTTTAAAAAGCTGAAAGTAGAGGACTTCTTCTGCGAAGAGGATGCATTAAAAGCCGCAGAGAAATGGATTCAAGATTTTCCTTC
TGTTTCATTTGAAAAGGTAGATGTGAAATCCATTAAAAAACGTGAATCGGGTAAAAAAGGCAGACCTTCAAAAGATGAAGAATTAAAGACTTATTTCAGG
ATTGATGGCATCATAAAGGTTAATGATGCTTTTGTTTTGAAAGAAATGGAGAAAATGGGACTTTTCATTCTTGCAAGTAATGATATCAGTCTTTCTCCTG
AAGAGATGCTGAAGTATTACAAAGGACAGGACAATGTAGAAAAAGGATTCAGATTCTTGAAAAGTGATACATTTAGCATATCGAAAGTCTACCTCAAGAA
GAAAGGAAGAATTGAAGCATTAACCATGATAATGGTTCTATGCTTAATGATTTATTCTATTGCAGAATGGAAACTGAGAATTAAATTAGAAACAGAAAAT
GAAACGGTGCCAGATCAAAAAGGGAAACCAACAAAAAGACCTACAATGAGATGGATATTTTTCAAGTTCCAAGGAATTACAGAACTTATTTCTCAGAAAA
AAGGAAAAATGAAGTCAGAAATATTGAATATGGAGGAGATTCACTGGAAGATATTGAGTCTAATGGGAGAGAAATATGAAAATATATATCTCTAATTACG
TTAACCTGCCGAATGTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1629 bp542 aa671695+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAEKNSSRRVESSLKRTRFLGHLGLMAGVFRELEVDKLIDEKLPKERNHNVPHSVCILAMVLNGLGFIGQRLYLFPDFFKNVSTERLFGDGIIKEDLNQY
AIGETLDRIVKYGPTKLFTEIALHIMARLPIPVHCLHADTTSVSVFGDYDDEETESIDITFGIPKNGRWDLKQFVLSLIVNQHGIPLFMNTHSGNASDKN
TILEAITSLKSVLRPESKVYYVADSSFYTDNNIQNIGTSFWISRVPATITEAKELLAANLNLQKLKSDERYSFYQTFVEYGGIKQKWVLLLSHKMKEKKE
GTFRTKLDKEVEKAEKSFKKLKVEDFFCEEDALKAAEKWIQDFPSVSFEKVDVKSIKKRESGKKGRPSKDEELKTYFRIDGIIKVNDAFVLKEMEKMGLF
ILASNDISLSPEEMLKYYKGQDNVEKGFRFLKSDTFSISKVYLKKKGRIEALTMIMVLCLMIYSIAEWKLRIKLETENETVPDQKGKPTKRPTMRWIFFK
FQGITELISQKKGKMKSEILNMEEIHWKILSLMGEKYENIYL

 

Blast result :
Comments
ISMma4 is 91% aa similar to ISMma3. There are three full copies and four partial copies in Mathanosarcina mazei Go1 genome.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461