ISMma3

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003901 ND Methanosarcina mazei
Methanosarcina mazei Go1
DNA section
IS Length : 1719 bp

Ends


IR Length : 14/16

IRL : CCTACTCTCGGCAGGTAAACATATAGATTAATATTATTAATTTTATATCT
IRR : CCTACATTCGGCAGGTTGACGTAATTAGAGATAGATATTTTCATATTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
AGGGTCAAAATGCATCCCAACGTCTTTGAGGCTT7

DNA sequence

CCTACTCTCGGCAGGTAAACATATAGATTAATATTATTAATTTTATATCTCTTTCCTGGTCTTCCCATGTCAGAGAAAAACAGTAGTAGAAGAGTTGAAT
CTTCCTTAAAACGTACAAGGTTCTTAGGTCACCTTGGTCTCATGGCTGGAGTTTTCAGAGAACTTGAAGTTGACAAACTGATCGATGAGAAACTTCCCAA
GGAAAGGGATCACAATGTTCCTCACTCAGTTTGCATCCTTGCCATGGTACTCAATGGTCTTGGTTTCATAGGGCAACGTCTGTACCTTTTTCCTGATTTT
TTCAAAAACATTTCTACTGAAAGGCTTTTCGGAGACAATGTAACAAGAGAAGACCTGAATCAATATGCTATCGGAGAGACTCTTGATAGAATCGTAAAAT
ATGGCCCTACAAAACTGTTTACGGAAATTGCTCTTCACATTATGGCTCGTCTACCTATTCCTGTTCACTGTTTACACGCTGACACTACAAGTGTCAGCGT
TTATGGGGATTATGAAGACGAAGAAACTGAGTCTATTGATATTACTTTTGGAATTCCCAAAAACGGAAGATGGGACCTCAAACAATTTGTACTGAGCTTG
ATTGTTAATCAGCATGGCATACCTCTTTTCATGAACACCCATTCAGGAAATGCTTCCGACAAAAACACAATTCTGGAAGCTATCAACTCTCTTAAATCAG
TTCTAAGGCCTGAAAGCAAAGTGTACTATGTCGCTGATAGTTCCTTTTACACAGACAATAATATCAAGAACATAGGAACGTCATTCTGGATCAGTCGCGT
TCCTGCAACAATTACCGAGGCAAAGGAACTGTTAGCTGCAAATCTGAACCTGAAAACGCTAAAAAGCGACGAAAGATACTCATTTTATCAAACCTTTGTG
GAATATGGTGGAGTTAAACAAAAGTGGGTTTTGCTGCTTTCTCACAAGATGAAAGAGAAAAAAGAGCAAACTCTCAGAACAAAGCTTGACAAAGAGTTTG
AAAAAGCAGAGAAGTCTTTTAAAAAGCTGAAAGGAGAGGACTTCTTCTGTGAAGATGATGCATTAAAAGCCGCAGAGAAATGGATTCAAGATTTCCCCTC
AATTGTGTTTGAAAATGTTGATTTGAAAGCCATTAAAAAACGTGAATCGGGTAAAAGAGGCAGACCTTCAAAAGATGAGAAATTAAAGACTTATTACAGG
ATTGATGGCAGTTTAAAGACTAATGAAGCTTTTGTTTTGAAAGAAATGGAGAAAATGGGACTTTTCATTCTTGCAAGTAATGATATCAGTATTTCTCCTG
AAGATATGCTGAAGTATTACAAAGGACAGGACAATGTAGAAAAAGGATTCAGGTTCTTGAAAAGTGATACGTTTAGCATATCGAAAGTTTACCTCAAGAA
AAAATCCCGAATTGAAGCACTGACTATGATAATGGTTCTCTGCTTAATGATTTATTCAATTGCAGAATGGAAATTAAGAACAAAGTTAGAAGAAGAAAAT
GAAACGGTTCCAGATCAAAAAGGGAAGCCAACAAAAAGACCTACAATGAGATGGATATTTTTCAATTTCCAGGGAATTACAGAACTTAGGATTCAGAAAC
AAGGAGAAATAGAGTCCGAAATATTGAATATGGAGGATATTCACTGGAAGATACTGAGGCTCATGGGAGAAAAATATGAAAATATCTATCTCTAATTACG
TCAACCTGCCGAATGTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1629 bp542 aa671695+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSEKNSSRRVESSLKRTRFLGHLGLMAGVFRELEVDKLIDEKLPKERDHNVPHSVCILAMVLNGLGFIGQRLYLFPDFFKNISTERLFGDNVTREDLNQY
AIGETLDRIVKYGPTKLFTEIALHIMARLPIPVHCLHADTTSVSVYGDYEDEETESIDITFGIPKNGRWDLKQFVLSLIVNQHGIPLFMNTHSGNASDKN
TILEAINSLKSVLRPESKVYYVADSSFYTDNNIKNIGTSFWISRVPATITEAKELLAANLNLKTLKSDERYSFYQTFVEYGGVKQKWVLLLSHKMKEKKE
QTLRTKLDKEFEKAEKSFKKLKGEDFFCEDDALKAAEKWIQDFPSIVFENVDLKAIKKRESGKRGRPSKDEKLKTYYRIDGSLKTNEAFVLKEMEKMGLF
ILASNDISISPEDMLKYYKGQDNVEKGFRFLKSDTFSISKVYLKKKSRIEALTMIMVLCLMIYSIAEWKLRTKLEEENETVPDQKGKPTKRPTMRWIFFN
FQGITELRIQKQGEIESEILNMEDIHWKILRLMGEKYENIYL

 

Blast result :
Comments
ISMma3 is 91% aa similar to ISMac5. There are two full copies in Mathanosarcina mazei Go1 genome.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461