ISMac12

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003552 ND Methanosarcina acetivorans
Methanosarcina acetivorans C2A
DNA section
IS Length : 1674 bp

Ends


IR Length : 22/26

IRL : CCTGACTTCCCACTAATTTAGGCACAACTCCTCTTTTTGCTTTAATTTCA
IRR : CCTGACTTCCCATCGAATTAGGCACATATTCCAAGCGCATCTAATATTTC

Insertion site


Left flankDirect repeatRight flankDR Length
ACAATTTTTTCGAAACTTTCATAACCACCTTATAAATAAC6

DNA sequence

CCTGACTTCCCACTAATTTAGGCACAACTCCTCTTTTTGCTTTAATTTCAGTGCTCTATCTATCGAAAAGTATATATCTTTATGTGCCTAATTATTATGC
ATAATGAAGCCATTTACAAGAGTCAAAGTAATAAAAGGAAACGAATACCTCTATGAGATCACTCCTTATTACGATCCTGTAGAAAAGAAAATCCGACAGA
AAAGCAAGTATCTTGGGAAACTTGTGAACGACCAACCAATAAAAGTTCGCTCTCAAAAGAAACCACTGATATCTATCCCTGAAAAGGTACTCTCCTATGG
AGAGTACCTTCCCCTCTTAAAAATCGTAGAAGAGTTAAAACTTGATCTGCTGCTTAGCAAAAGCTTCTCAGAAAAACAAGCGTGGTCGATTTTAACTCTT
GCGATGAATCACATAATAAAACCGCTAGCTTATGATCACATTGAAGACTGGTATGAAGGTACTGTTCTCTCTAAGGATCATCCTGAACTACCTCTTTCCT
CTCAATCCATTTCAAACCTTCTGGACTCTATTGGAAATAGTGCTGTACACATTGATTTTTCAAAGTCCTTGATAAAAGAGGTATGCACTTCCAATACTCT
CATTTATGACATCACCTCCATTTCGACCTATTCACAGATGATCAGCCTACTGGAGTACGGTTATAACAGAGATAATCTCGATTTGCCACAAATAAACTTC
TCGATGATCGTGGATAAGGAAAAAGGGATTCCTGTGATGTACGATCTTTATCCAAGAAGCATATCGGATGTAACTACATTAAAAAACACGATCAAGAAGC
TTCAGGAGGAAGGAGTCCATGATTATACTTTAATCATGGACAAAGGCTTCATTTCAACAGCTAACATAGAATCACTTGTGTCCAACGATCTTTCTTTCAT
AGTCCCACCTTCACAAACGATTAAAAGTGTGAAGGAAAAAACGTCCGAGATACACAAAACGATATATGACCCGCAAAATCTCGATGTCTACGAAGGTGAA
CCTATATTCACGATGCAAGTCGACATTAACGTTGGAGAGTTGAACGTAAAAGGTTATGCCTATTACGATCAAAAGCGAGAACATCAGGAAAGAAATAGTT
TTTTCAAAGGTCTGCATGCAACGCTTGAGATGCTTGAAAAGGTAGATTTAAGACGTTGGATGGATCCTAAAATGGTGTTTATTAGTCTGGCAAAGAGATA
TGCTTCTTATTTGACATGGAAAGTCAAGGACAATAAGTTTGAAATTAAAGTAAAGAAGAATGCAGTGTCACAACGAGTAAACAAGATGGGAAAATTCATC
CTGCTGTATAGGGGAAATCTGGAGTGGGATGAGTGCCTTTCACTTTACAGAAGCAAAGATATAGTTGAGAAAGGATTTTATTTCCTTAAAAATTACATAG
AAGTTCCACCGGCAAATGTCAAGAAAAACAGCACTTTAAAAGGGCATCTGTTCATCTGCTTTGTTTCTTTGATCATTAGAATGAAGCTGATGAAGGAAAT
GAAAGAGGCAAAACTCAACAAGAAGTTCTCTGTTGAAAGCTTGATCGTGCAACTTGAAAAGAACAAAATTCTCCTTCTGTCAGAAGGAGAACAAATTGTC
ATGGAAAGGACAAAAAAGCAAAAAGAAATATTAGATGCGCTTGGAATATGTGCCTAATTCGATGGGAAGTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1554 bp517 aa1041657+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKPFTRVKVIKGNEYLYEITPYYDPVEKKIRQKSKYLGKLVNDQPIKVRSQKKPLISIPEKVLSYGEYLPLLKIVEELKLDLLLSKSFSEKQAWSILTLA
MNHIIKPLAYDHIEDWYEGTVLSKDHPELPLSSQSISNLLDSIGNSAVHIDFSKSLIKEVCTSNTLIYDITSISTYSQMISLLEYGYNRDNLDLPQINFS
MIVDKEKGIPVMYDLYPRSISDVTTLKNTIKKLQEEGVHDYTLIMDKGFISTANIESLVSNDLSFIVPPSQTIKSVKEKTSEIHKTIYDPQNLDVYEGEP
IFTMQVDINVGELNVKGYAYYDQKREHQERNSFFKGLHATLEMLEKVDLRRWMDPKMVFISLAKRYASYLTWKVKDNKFEIKVKKNAVSQRVNKMGKFIL
LYRGNLEWDECLSLYRSKDIVEKGFYFLKNYIEVPPANVKKNSTLKGHLFICFVSLIIRMKLMKEMKEAKLNKKFSVESLIVQLEKNKILLLSEGEQIVM
ERTKKQKEILDALGICA

 

Blast result :
Comments
ISMac12 is 40% aa similar to ISMmy1.
There are 3 complete copies in Methanosarcina acetivorans C2A genome.
References
1] Galagan,J.E., Nusbaum,C., Roy,A., Endrizzi,M.G., Macdonald,P., FitzHugh,W., Calvo,S., Engels,R., Smirnov,S., Atnoor,D., Brown,A., Allen,N., Naylor,J., Stange-Thomann,N., DeArellano,K., Johnson,R., Linton,L., McEwan,P., McKernan,K., Talamas,J., Tirrell,A., Ye,W., Zimmer,A., Barber,R.D., Cann,I., Graham,D.E., Grahame,D.A., Guss,A.M., Hedderich,R., Ingram-Smith,C., Kuettner,H.C., Krzycki,J.A., Leigh,J.A., Li,W., Liu,J., Mukhopadhyay,B., Reeve,J.N., Smith,K., Springer,T.A., Umayam,L.A., White,O., White,R.H., Conway de Macario,E., Ferry,J.G., Jarrell,K.F., Jing,H., Macario,A.J., Paulsen,I., Pritchett,M., Sowers,K.R., Swanson,R.V., Zinder,S.H., Lander,E., Metcalf,W.W. and Birren,B. (2002) Genome Res. 12 (4), 532-542