ISPpu18

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas putida
Pseudomonas putida
DNA section
IS Length : 1192 bp

Ends


IR Length : 12

IRL : GGAAGGTCTGAAAAAGACTTCCTGAATCTGGTGAAATACGCCGATCCCGC
IRR : GGAAGGTCTGAAGTAGCCCTGTATTTCCGGTCGACTTCAGCCCTCGCTGC

Insertion site


Left flankDirect repeatRight flankDR Length
TTAAAAGGATCTAGGTGAAGATCC4

DNA sequence

GGAAGGTCTGAAAAAGACTTCCTGAATCTGGTGAAATACGCCGATCCCGCCAGCCGAGTTTTTCCATGAAGCAGATGACCTTCGCCGACGCCGAGTACGC
CGGCAAGCGCAAGCAGACCCGTAAGGAATTGTTCCTGATCGAGATGGATCAGGTGGTGCCGTGGAAGGGATTGATTGCCCTGATCGAGCCACACTACCCA
AAGGGTGAAGGTGGTCGTCCAGCCTATCCGCTGATGGCCATGTTACGTATCCATCTGATGCAGAACTGGTTCGGCTACAGCGACCCGGCCATGGAAGAAG
CGCTCTACGAGACGACCATCCTGCGTCAGTTCGCCGGGCTGAGCCTCGAGCGTATTCCCGACGAAACCACCATCCTCAAGTTCCGTCGCTTGCTGGAGAA
ACATGAGCTGGCAGCCGGCATCCTCGGCGTAATCAATGGCTACCTGGGGGATCGCGGCCTGTCGCTGCGCCAGGGCACTATCGTCGATGCCACACTGATC
CACGCGCCCAGCTCGACCAAGAACCAGGACGGCAAGCGCGACCCGGAAATGCACCAGAGCAAGAAAGGGAACCAGTATTACTTTGGCATGAAGGCGCACA
TCGGCGTGGATGATGAGTCGGGGCTGGTACACAGCGTGGTAGGCACGGCAGCCAACGTGGCGGATATCACCCAGGTCGACAAACTGCTGCACGGTGACGA
GAACGTCGTCTGCGCCGATGCCGGCTACACCGGCGTCGAAAAGCGCCCCGAACATGCTGGCCGCGAAGTGATCTGGCAGGTCGCAGCACGCCGCAGCACC
TACAAGAAGCTCGATAAACGCAGCGCCCTGTACAAAGCCAAGCGCAAGATCGAGAAGGCCAAGGCACAAGTGCGAGCGAAGGTCGAGCACCCGTTTCGAG
TGATCAAGCGCCAGTTCGGTTACGTGAAGGTGCGCTTCCGTGGCCTGGCCAAGAACACCGCTCAGCTGGTGACGCTGTTCGCGCTGTCGAACCTATGGAT
GGCGCGCCGACATTTGCTGACTACCGCAGGAAAGGTGCACCTGTAATGCGGAAAATGGCTGCTGCGAGGTGCTCGCGGCGGCCAAAAACGGAGAACTGAG
CGGGTTACCTGGTCGAATTTGATCGACGGCCCGCTTTCAAAAGCAGCGAGGGCTGAAGTCGACCGGAAATACAGGGCTACTTCAGACCTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa661046+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQMTFADAEYAGKRKQTRKELFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRIHLMQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDE
TTILKFRRLLEKHELAAGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNQDGKRDPEMHQSKKGNQYYFGMKAHIGVDDESGLVHSVVGTAANVAD
ITQVDKLLHGDENVVCADAGYTGVEKRPEHAGREVIWQVAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYVKVRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTTAGKVHL

 

Blast result :
Comments
ISPpu18 is 97% aa similar to IS1384.
References
1] Laurent Poirel (2005) Direct submission