ISPpu18
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas putida | Pseudomonas putida |
DNA section
IS Length : 1192 bp
Ends
IR Length : 12
IRL : GGAAGGTCTGAAAAAGACTTCCTGAATCTGGTGAAATACGCCGATCCCGC
IRR : GGAAGGTCTGAAGTAGCCCTGTATTTCCGGTCGACTTCAGCCCTCGCTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAAAAGGAT | CTAG | GTGAAGATCC | 4 |
DNA sequence
GGAAGGTCTGAAAAAGACTTCCTGAATCTGGTGAAATACGCCGATCCCGCCAGCCGAGTTTTTCCATGAAGCAGATGACCTTCGCCGACGCCGAGTACGC
CGGCAAGCGCAAGCAGACCCGTAAGGAATTGTTCCTGATCGAGATGGATCAGGTGGTGCCGTGGAAGGGATTGATTGCCCTGATCGAGCCACACTACCCA
AAGGGTGAAGGTGGTCGTCCAGCCTATCCGCTGATGGCCATGTTACGTATCCATCTGATGCAGAACTGGTTCGGCTACAGCGACCCGGCCATGGAAGAAG
CGCTCTACGAGACGACCATCCTGCGTCAGTTCGCCGGGCTGAGCCTCGAGCGTATTCCCGACGAAACCACCATCCTCAAGTTCCGTCGCTTGCTGGAGAA
ACATGAGCTGGCAGCCGGCATCCTCGGCGTAATCAATGGCTACCTGGGGGATCGCGGCCTGTCGCTGCGCCAGGGCACTATCGTCGATGCCACACTGATC
CACGCGCCCAGCTCGACCAAGAACCAGGACGGCAAGCGCGACCCGGAAATGCACCAGAGCAAGAAAGGGAACCAGTATTACTTTGGCATGAAGGCGCACA
TCGGCGTGGATGATGAGTCGGGGCTGGTACACAGCGTGGTAGGCACGGCAGCCAACGTGGCGGATATCACCCAGGTCGACAAACTGCTGCACGGTGACGA
GAACGTCGTCTGCGCCGATGCCGGCTACACCGGCGTCGAAAAGCGCCCCGAACATGCTGGCCGCGAAGTGATCTGGCAGGTCGCAGCACGCCGCAGCACC
TACAAGAAGCTCGATAAACGCAGCGCCCTGTACAAAGCCAAGCGCAAGATCGAGAAGGCCAAGGCACAAGTGCGAGCGAAGGTCGAGCACCCGTTTCGAG
TGATCAAGCGCCAGTTCGGTTACGTGAAGGTGCGCTTCCGTGGCCTGGCCAAGAACACCGCTCAGCTGGTGACGCTGTTCGCGCTGTCGAACCTATGGAT
GGCGCGCCGACATTTGCTGACTACCGCAGGAAAGGTGCACCTGTAATGCGGAAAATGGCTGCTGCGAGGTGCTCGCGGCGGCCAAAAACGGAGAACTGAG
CGGGTTACCTGGTCGAATTTGATCGACGGCCCGCTTTCAAAAGCAGCGAGGGCTGAAGTCGACCGGAAATACAGGGCTACTTCAGACCTTCC
CGGCAAGCGCAAGCAGACCCGTAAGGAATTGTTCCTGATCGAGATGGATCAGGTGGTGCCGTGGAAGGGATTGATTGCCCTGATCGAGCCACACTACCCA
AAGGGTGAAGGTGGTCGTCCAGCCTATCCGCTGATGGCCATGTTACGTATCCATCTGATGCAGAACTGGTTCGGCTACAGCGACCCGGCCATGGAAGAAG
CGCTCTACGAGACGACCATCCTGCGTCAGTTCGCCGGGCTGAGCCTCGAGCGTATTCCCGACGAAACCACCATCCTCAAGTTCCGTCGCTTGCTGGAGAA
ACATGAGCTGGCAGCCGGCATCCTCGGCGTAATCAATGGCTACCTGGGGGATCGCGGCCTGTCGCTGCGCCAGGGCACTATCGTCGATGCCACACTGATC
CACGCGCCCAGCTCGACCAAGAACCAGGACGGCAAGCGCGACCCGGAAATGCACCAGAGCAAGAAAGGGAACCAGTATTACTTTGGCATGAAGGCGCACA
TCGGCGTGGATGATGAGTCGGGGCTGGTACACAGCGTGGTAGGCACGGCAGCCAACGTGGCGGATATCACCCAGGTCGACAAACTGCTGCACGGTGACGA
GAACGTCGTCTGCGCCGATGCCGGCTACACCGGCGTCGAAAAGCGCCCCGAACATGCTGGCCGCGAAGTGATCTGGCAGGTCGCAGCACGCCGCAGCACC
TACAAGAAGCTCGATAAACGCAGCGCCCTGTACAAAGCCAAGCGCAAGATCGAGAAGGCCAAGGCACAAGTGCGAGCGAAGGTCGAGCACCCGTTTCGAG
TGATCAAGCGCCAGTTCGGTTACGTGAAGGTGCGCTTCCGTGGCCTGGCCAAGAACACCGCTCAGCTGGTGACGCTGTTCGCGCTGTCGAACCTATGGAT
GGCGCGCCGACATTTGCTGACTACCGCAGGAAAGGTGCACCTGTAATGCGGAAAATGGCTGCTGCGAGGTGCTCGCGGCGGCCAAAAACGGAGAACTGAG
CGGGTTACCTGGTCGAATTTGATCGACGGCCCGCTTTCAAAAGCAGCGAGGGCTGAAGTCGACCGGAAATACAGGGCTACTTCAGACCTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 66 | 1046 | + | No |
Chemistry : DDE
ORF sequence :
MKQMTFADAEYAGKRKQTRKELFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRIHLMQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDE
TTILKFRRLLEKHELAAGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNQDGKRDPEMHQSKKGNQYYFGMKAHIGVDDESGLVHSVVGTAANVAD
ITQVDKLLHGDENVVCADAGYTGVEKRPEHAGREVIWQVAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYVKVRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTTAGKVHL
TTILKFRRLLEKHELAAGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNQDGKRDPEMHQSKKGNQYYFGMKAHIGVDDESGLVHSVVGTAANVAD
ITQVDKLLHGDENVVCADAGYTGVEKRPEHAGREVIWQVAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYVKVRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTTAGKVHL
Blast result :
Comments
ISPpu18 is 97% aa similar to IS1384.
References
1] Laurent Poirel (2005) Direct submission