ISPpu17

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas putida
Pseudomonas putida
DNA section
IS Length : 1066 bp

Ends


IR Length : 22

IRL : CCTGAATTCATAGAATAAGCGCAACGCTTGAAACGAGAGGCAGAGAGCCA
IRR : CCTGAATTCAACACATAAGTGCAACGCTCACCCCTGTATGCACTTCGTAC

Insertion site


Left flankDirect repeatRight flankDR Length
CATTATTATCATGACATTAACCT3

DNA sequence

CCTGAATTCATAGAATAAGCGCAACGCTTGAAACGAGAGGCAGAGAGCCAGCCACCGGTAGAATCCAGGCTCTCACACCGAAGGATTCAAGCGCAGATGA
CTACGCATTACCGGCAGCTGACTCAGGGACAACGTTACCAGATTGAGGCTGGCTTGAGCGCCGCAGAGAGCCAGGCGAGCATTGCAAAGCGGGTCGGCGT
GCATCCCTCGACGATCAGTCGCGAGGTTCGCCGCAACAGCACCCAGAATATCTACAAGGCTGTTTCTGCGGCCCATGAAAGTGATGCTCGTCGAGCGGGT
GCGCGCAAGTTTTGCAAGCCGGCGACATGGCTCAGCCATCATCTCCCGGTGTGGCTCAAGCATGGCATGAGTCCGGAGCAGATCGCCCAGCGGTTGAAGC
AGGAGCAGCCAAGCCGGGCGGTCAGCCATGAGTGGATTTATCGGTTCATTGCCGCCGAACAGCGCGCCGGTGGTGAGCTTTATACCTATCTGCGACATCG
CCGAAAGCGCTACCGGAAACGCTATGGAAGCCACGATCGGCGCGGGCAGCTGCGTAATCGCGTGTCAATCAGTGAACGCCCAGCCGAGGTCGAAAGCCGC
GAGCGCCTGGGGGACTGGGAGGGCGATACGGTACATGGACTGGGCGGTAACCTGGTGACCCTGGTTGATCGCAAAAGCGGCTATCTGAGCGCCTATCCGG
TCAAGCGCAGAACGCGCCGGCAGGTAACGCGGGCGATCAATCTGATGCTTCAGGGCCATGCCGCTCACACGCTGACGCTGGATAACGGAAGGGAGTTTGC
CGGGCATGAACGCATCGCGCTACGGAGCCAGTGCCAGGTCTTTTTTGCAGACCCCTATTCATCCTGGCAACGTGGCACCAATGAAAACACCAACGGTCTG
CTCCGCCAGTATTTCCCCAAGGGCAGCGACTTCAGCAAGCTGACCGTCGAAGCCGTCAATCGGACAGTAGCGAGGATCAATCTACGCCCGCGCAAGCGCT
TGGGCTGGAAGACGCCGTACGAAGTGCATACAGGGGTGAGCGTTGCACTTATGTGTTGAATTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa971059+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTTHYRQLTQGQRYQIEAGLSAAESQASIAKRVGVHPSTISREVRRNSTQNIYKAVSAAHESDARRAGARKFCKPATWLSHHLPVWLKHGMSPEQIAQRL
KQEQPSRAVSHEWIYRFIAAEQRAGGELYTYLRHRRKRYRKRYGSHDRRGQLRNRVSISERPAEVESRERLGDWEGDTVHGLGGNLVTLVDRKSGYLSAY
PVKRRTRRQVTRAINLMLQGHAAHTLTLDNGREFAGHERIALRSQCQVFFADPYSSWQRGTNENTNGLLRQYFPKGSDFSKLTVEAVNRTVARINLRPRK
RLGWKTPYEVHTGVSVALMC

 

Blast result :
Comments
ISPpu17 is 61% aa similar to ISPlu1.
References
1] Laurent Poirel (2005) Direct submission