ISPpu17
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas putida | Pseudomonas putida |
DNA section
IS Length : 1066 bp
Ends
IR Length : 22
IRL : CCTGAATTCATAGAATAAGCGCAACGCTTGAAACGAGAGGCAGAGAGCCA
IRR : CCTGAATTCAACACATAAGTGCAACGCTCACCCCTGTATGCACTTCGTAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATTATTATC | ATG | ACATTAACCT | 3 |
DNA sequence
CCTGAATTCATAGAATAAGCGCAACGCTTGAAACGAGAGGCAGAGAGCCAGCCACCGGTAGAATCCAGGCTCTCACACCGAAGGATTCAAGCGCAGATGA
CTACGCATTACCGGCAGCTGACTCAGGGACAACGTTACCAGATTGAGGCTGGCTTGAGCGCCGCAGAGAGCCAGGCGAGCATTGCAAAGCGGGTCGGCGT
GCATCCCTCGACGATCAGTCGCGAGGTTCGCCGCAACAGCACCCAGAATATCTACAAGGCTGTTTCTGCGGCCCATGAAAGTGATGCTCGTCGAGCGGGT
GCGCGCAAGTTTTGCAAGCCGGCGACATGGCTCAGCCATCATCTCCCGGTGTGGCTCAAGCATGGCATGAGTCCGGAGCAGATCGCCCAGCGGTTGAAGC
AGGAGCAGCCAAGCCGGGCGGTCAGCCATGAGTGGATTTATCGGTTCATTGCCGCCGAACAGCGCGCCGGTGGTGAGCTTTATACCTATCTGCGACATCG
CCGAAAGCGCTACCGGAAACGCTATGGAAGCCACGATCGGCGCGGGCAGCTGCGTAATCGCGTGTCAATCAGTGAACGCCCAGCCGAGGTCGAAAGCCGC
GAGCGCCTGGGGGACTGGGAGGGCGATACGGTACATGGACTGGGCGGTAACCTGGTGACCCTGGTTGATCGCAAAAGCGGCTATCTGAGCGCCTATCCGG
TCAAGCGCAGAACGCGCCGGCAGGTAACGCGGGCGATCAATCTGATGCTTCAGGGCCATGCCGCTCACACGCTGACGCTGGATAACGGAAGGGAGTTTGC
CGGGCATGAACGCATCGCGCTACGGAGCCAGTGCCAGGTCTTTTTTGCAGACCCCTATTCATCCTGGCAACGTGGCACCAATGAAAACACCAACGGTCTG
CTCCGCCAGTATTTCCCCAAGGGCAGCGACTTCAGCAAGCTGACCGTCGAAGCCGTCAATCGGACAGTAGCGAGGATCAATCTACGCCCGCGCAAGCGCT
TGGGCTGGAAGACGCCGTACGAAGTGCATACAGGGGTGAGCGTTGCACTTATGTGTTGAATTCAGG
CTACGCATTACCGGCAGCTGACTCAGGGACAACGTTACCAGATTGAGGCTGGCTTGAGCGCCGCAGAGAGCCAGGCGAGCATTGCAAAGCGGGTCGGCGT
GCATCCCTCGACGATCAGTCGCGAGGTTCGCCGCAACAGCACCCAGAATATCTACAAGGCTGTTTCTGCGGCCCATGAAAGTGATGCTCGTCGAGCGGGT
GCGCGCAAGTTTTGCAAGCCGGCGACATGGCTCAGCCATCATCTCCCGGTGTGGCTCAAGCATGGCATGAGTCCGGAGCAGATCGCCCAGCGGTTGAAGC
AGGAGCAGCCAAGCCGGGCGGTCAGCCATGAGTGGATTTATCGGTTCATTGCCGCCGAACAGCGCGCCGGTGGTGAGCTTTATACCTATCTGCGACATCG
CCGAAAGCGCTACCGGAAACGCTATGGAAGCCACGATCGGCGCGGGCAGCTGCGTAATCGCGTGTCAATCAGTGAACGCCCAGCCGAGGTCGAAAGCCGC
GAGCGCCTGGGGGACTGGGAGGGCGATACGGTACATGGACTGGGCGGTAACCTGGTGACCCTGGTTGATCGCAAAAGCGGCTATCTGAGCGCCTATCCGG
TCAAGCGCAGAACGCGCCGGCAGGTAACGCGGGCGATCAATCTGATGCTTCAGGGCCATGCCGCTCACACGCTGACGCTGGATAACGGAAGGGAGTTTGC
CGGGCATGAACGCATCGCGCTACGGAGCCAGTGCCAGGTCTTTTTTGCAGACCCCTATTCATCCTGGCAACGTGGCACCAATGAAAACACCAACGGTCTG
CTCCGCCAGTATTTCCCCAAGGGCAGCGACTTCAGCAAGCTGACCGTCGAAGCCGTCAATCGGACAGTAGCGAGGATCAATCTACGCCCGCGCAAGCGCT
TGGGCTGGAAGACGCCGTACGAAGTGCATACAGGGGTGAGCGTTGCACTTATGTGTTGAATTCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 97 | 1059 | + | No |
Chemistry : DDE
ORF sequence :
MTTHYRQLTQGQRYQIEAGLSAAESQASIAKRVGVHPSTISREVRRNSTQNIYKAVSAAHESDARRAGARKFCKPATWLSHHLPVWLKHGMSPEQIAQRL
KQEQPSRAVSHEWIYRFIAAEQRAGGELYTYLRHRRKRYRKRYGSHDRRGQLRNRVSISERPAEVESRERLGDWEGDTVHGLGGNLVTLVDRKSGYLSAY
PVKRRTRRQVTRAINLMLQGHAAHTLTLDNGREFAGHERIALRSQCQVFFADPYSSWQRGTNENTNGLLRQYFPKGSDFSKLTVEAVNRTVARINLRPRK
RLGWKTPYEVHTGVSVALMC
KQEQPSRAVSHEWIYRFIAAEQRAGGELYTYLRHRRKRYRKRYGSHDRRGQLRNRVSISERPAEVESRERLGDWEGDTVHGLGGNLVTLVDRKSGYLSAY
PVKRRTRRQVTRAINLMLQGHAAHTLTLDNGREFAGHERIALRSQCQVFFADPYSSWQRGTNENTNGLLRQYFPKGSDFSKLTVEAVNRTVARINLRPRK
RLGWKTPYEVHTGVSVALMC
Blast result :
Comments
ISPpu17 is 61% aa similar to ISPlu1.
References
1] Laurent Poirel (2005) Direct submission