ISC1078
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002754 | ND | Sulfolobus solfataricus | Sulfolobus solfataricus P2 |
DNA section
IS Length : 1086 bp
Ends
IR Length : 30/31
IRL : GTTATACTTCGTCAGACTTTAAAGAGCAAGATTTATATTTCATGAGTAAT
IRR : GTTATACTTCGTCAGACTTTAAAGGGCAAGAAAACTTCACTCAGTATTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGATAAATTTTTATGT | TA | ACAAACAAGCAATG | 2 |
DNA sequence
GTTATACTTCGTCAGACTTTAAAGAGCAAGATTTATATTTCATGAGTAATACTAAATTGTTATGCCGAAATCCAGAATGCACGGTATAAGGCTCAACAAG
AAACAAGAGGAAGAGAGGAGGATTAACGCTGTAAAAGATGTGAGGAACGGGATGAGTATAAAGGACGTTGCCAAGAAGTATGACGTCTCCATCTTTACCG
TGTACAAGTGGTTGAGGAAAGGTGACCTGAGCGCTAAGCCGAGGAAGGGACCCACGAAACTGAAGGACGAGGAAAAGCTCGTCCGAATCTTAGAAAAGAG
CCCAAGAGATTTCGGCTTGAACTACGATTTCTGGACCTTGAAGCTCATAGCGTATATACTTGACAAGGAATTTGGGATAAAGTACAACCCGAGGAGTTTA
AGCCCAGTCCTCAAGAAGTTAGGCTTCAAGTACAAGAAAGGAAAGAGAACTTACGTTAGAGACGATAACGCTGTAGAAAGGTGGGTGAAGGAACAAGGGG
AGAAGCTTTTTAAAAAAATAAGAGAAGGGTACAAGGTACACATCTTCGATGAGTCGTACGTGTCCTACATAAACAAGGGTAAAGGCTGGATGAAGGTCGG
AGGAGGGATAAAGGTCAACCCTAAGAGGAAGAGGTTTGCAGTAGTAGGCGGGATAACGATTAGTAAAGAGGGAATAACTTTCTCCTATTCGACATACAAG
AAGCCCTCGCTGAACTCAAAAGATATTATACTCTACTTGAGGAAGGTAATAAAGGACGAGAAGACCGTGATAGTGATGGATAATGCTAGAATACACGGTA
ATGAAGTGAGGGAATTCCTTGAGGAAAATGGGGTGGAGTTTGTTTATCTGCCGCCTTACTCTCCGGATAAGAGTCCGGCGGAGGGGCCGTGGGCAGTCCT
CAAGAAAAGGCTCTACTCGAAGATTTACACGGACTTCGAGACCTTAATGTGGGATGCAACGAGGTTCCTACGCTCCATATCCAAGAGAGTAAATGACCTT
ACGTATAGTGTGAAGAGGTGCGGTGAACCTTGGACGTCAATACTGAGTGAAGTTTTCTTGCCCTTTAAAGTCTGACGAAGTATAAC
AAACAAGAGGAAGAGAGGAGGATTAACGCTGTAAAAGATGTGAGGAACGGGATGAGTATAAAGGACGTTGCCAAGAAGTATGACGTCTCCATCTTTACCG
TGTACAAGTGGTTGAGGAAAGGTGACCTGAGCGCTAAGCCGAGGAAGGGACCCACGAAACTGAAGGACGAGGAAAAGCTCGTCCGAATCTTAGAAAAGAG
CCCAAGAGATTTCGGCTTGAACTACGATTTCTGGACCTTGAAGCTCATAGCGTATATACTTGACAAGGAATTTGGGATAAAGTACAACCCGAGGAGTTTA
AGCCCAGTCCTCAAGAAGTTAGGCTTCAAGTACAAGAAAGGAAAGAGAACTTACGTTAGAGACGATAACGCTGTAGAAAGGTGGGTGAAGGAACAAGGGG
AGAAGCTTTTTAAAAAAATAAGAGAAGGGTACAAGGTACACATCTTCGATGAGTCGTACGTGTCCTACATAAACAAGGGTAAAGGCTGGATGAAGGTCGG
AGGAGGGATAAAGGTCAACCCTAAGAGGAAGAGGTTTGCAGTAGTAGGCGGGATAACGATTAGTAAAGAGGGAATAACTTTCTCCTATTCGACATACAAG
AAGCCCTCGCTGAACTCAAAAGATATTATACTCTACTTGAGGAAGGTAATAAAGGACGAGAAGACCGTGATAGTGATGGATAATGCTAGAATACACGGTA
ATGAAGTGAGGGAATTCCTTGAGGAAAATGGGGTGGAGTTTGTTTATCTGCCGCCTTACTCTCCGGATAAGAGTCCGGCGGAGGGGCCGTGGGCAGTCCT
CAAGAAAAGGCTCTACTCGAAGATTTACACGGACTTCGAGACCTTAATGTGGGATGCAACGAGGTTCCTACGCTCCATATCCAAGAGAGTAAATGACCTT
ACGTATAGTGTGAAGAGGTGCGGTGAACCTTGGACGTCAATACTGAGTGAAGTTTTCTTGCCCTTTAAAGTCTGACGAAGTATAAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
914 bp | 337 aa | 62 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MPKSRMHGIRLNKKQEEERRINAVKDVRNGMSIKDVAKKYDVSIFTVYKWLRKGDLSAKPRKGPTKLKDEEKLVRILEKSPRDFGLNYDFWTLKLIAYIL
DKEFGIKYNPRSLSPVLKKLGFKYKKGKRTYVRDDNAVERWVKEQGEKLFKKIREGYKVHIFDESYVSYINKGKGWMKVGGGIKVNPKRKRFAVVGGITI
SKEGITFSYSTYKKPSLNSKDIILYLRKVIKDEKTVIVMDNARIHGNEVREFLEENGVEFVYLPPYSPDKSPAEGPWAVLKKRLYSKIYTDFETLMWDAT
RFLRSISKRVNDLTYSVKRCGEPWTSILSEVFLPFKV
DKEFGIKYNPRSLSPVLKKLGFKYKKGKRTYVRDDNAVERWVKEQGEKLFKKIREGYKVHIFDESYVSYINKGKGWMKVGGGIKVNPKRKRFAVVGGITI
SKEGITFSYSTYKKPSLNSKDIILYLRKVIKDEKTVIVMDNARIHGNEVREFLEENGVEFVYLPPYSPDKSPAEGPWAVLKKRLYSKIYTDFETLMWDAT
RFLRSISKRVNDLTYSVKRCGEPWTSILSEVFLPFKV
Blast result :
Comments
Eight complete copies and 6 partial copies are present in the genome. For 5 of them, the transposase is split in two ORFs. ISC1078 is 48% aa similar to IS885.
References
1] She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ et al. (2001) Proc Natl Acad Sci U S A. 98(14):7835-40