ISPst5
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY894752 | Y | Pseudomonas stutzeri | Pseudomonas stutzeri Q Bordetella petrii DSM 12804 Pseudomonas aeruginosa ST233 |
DNA section
IS Length : 1191 bp
Ends
IR Length : 12
IRL : GGATGGTCTGAAAAAGACTTCCCGAATCTGGTGAAATACGCCGATCCCGT
IRR : GGATGGTCTGAAGTAGTCAGGTATTTCTGGCTGACTCCAGCCCTTGCCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAAAAGGAT | CTAG | GTGAAGATCC | 4 |
TTCTCGTAGTCCTGGCTG | TCCTTAGG | CAACAGGCCGAACAGGA | 8 |
DNA sequence
GGATGGTCTGAAAAAGACTTCCCGAATCTGGTGAAATACGCCGATCCCGTTGCCCGAGTTTCCCGATGAAGCAAATGACCTTCGCCGACGCCGAGTACGC
CGGCAAGCGCAAGCAGACCCGCAAAGAGTTGTTCCTGATCGAGATGGATCAGGTGGTGCCGTGGAAGGGTTTGATTGCCCTGATCGAGCCGCACTACCCC
AAGGGTGAAGGTGGTCGTCCGGCGTATCAGTTGATGGCGATGCTGCGCGTACATTTGATGCAGAACTGGTTCGGCTACAGCGATCCGGCGATGGAGGAGG
CGCTGTACGAGACCACAATCTTGCGCCAGTTTGCCGGGCTGAACCTAGAGCGTATTCCCGACGAAACCACCATCCTCAATTTCCGTCGCCTGCTGGAGAA
GCACGAGTTGGCGGCCGGGATTCTGGCGGTGATCAATGGTTACCTGGGCGATCGGGGCCTGTCGCTGCGCCAGGGCACCATCGTCGATGCCACGCTGATC
CATGCGCCGAGTTCGACCAAGAACAAGGACGGTAAGCGTGACCCGGAAATGCACCAGACCAAGAAGGGCAACCAGTATTACTTCGGCATGAAGGCTCACA
TCGGCGCGGATGCCGAGTCAGGTCTGGTGCACAGCGTGGTGGGGACGGCAGCCAACGTTGCTGACGTTACCCAGGTCGACAAACTGCTGCATGGAAAGGA
AAACATGGTCGGCGCCGACGCGGGTTACACCGGCGTAGAGAAACGCCCGGAACATGAAGGCCGGGAGGTGATCTGGCAGATTGCGGCCCGCCGCAGTATG
TACAAGAAGCTGAGTAAGCGCAGTGCGCTGTACAAAGCCAAGCGCAAGATCGAGAAATCCAAGGCCCAGGTGCGCGCCAAAGTCGAGCACCCGTTCCGGG
TGATCAAGCGCCAATTCGGCTACGTGAAGACACGCTTCCGTGGCCTGGCGAAGAACACCGCGCAGTTGGTGACACTGTTCGCGCTGTCGAACCTGTGGAT
GGCGCGCCGACATTTGCTGACGAATGCAGGAGAGGTGCGTCTGTAATGCGGGAAATGGCCGGCGCGAGGTGCTCGCGCCGGCTATAAATCCGGAAAGAGG
GGATGATTTGATCGTTTTTTAGCCGAATCACCGTTTTGAAATCGGCAAGGGCTGGAGTCAGCCAGAAATACCTGACTACTTCAGACCATCC
CGGCAAGCGCAAGCAGACCCGCAAAGAGTTGTTCCTGATCGAGATGGATCAGGTGGTGCCGTGGAAGGGTTTGATTGCCCTGATCGAGCCGCACTACCCC
AAGGGTGAAGGTGGTCGTCCGGCGTATCAGTTGATGGCGATGCTGCGCGTACATTTGATGCAGAACTGGTTCGGCTACAGCGATCCGGCGATGGAGGAGG
CGCTGTACGAGACCACAATCTTGCGCCAGTTTGCCGGGCTGAACCTAGAGCGTATTCCCGACGAAACCACCATCCTCAATTTCCGTCGCCTGCTGGAGAA
GCACGAGTTGGCGGCCGGGATTCTGGCGGTGATCAATGGTTACCTGGGCGATCGGGGCCTGTCGCTGCGCCAGGGCACCATCGTCGATGCCACGCTGATC
CATGCGCCGAGTTCGACCAAGAACAAGGACGGTAAGCGTGACCCGGAAATGCACCAGACCAAGAAGGGCAACCAGTATTACTTCGGCATGAAGGCTCACA
TCGGCGCGGATGCCGAGTCAGGTCTGGTGCACAGCGTGGTGGGGACGGCAGCCAACGTTGCTGACGTTACCCAGGTCGACAAACTGCTGCATGGAAAGGA
AAACATGGTCGGCGCCGACGCGGGTTACACCGGCGTAGAGAAACGCCCGGAACATGAAGGCCGGGAGGTGATCTGGCAGATTGCGGCCCGCCGCAGTATG
TACAAGAAGCTGAGTAAGCGCAGTGCGCTGTACAAAGCCAAGCGCAAGATCGAGAAATCCAAGGCCCAGGTGCGCGCCAAAGTCGAGCACCCGTTCCGGG
TGATCAAGCGCCAATTCGGCTACGTGAAGACACGCTTCCGTGGCCTGGCGAAGAACACCGCGCAGTTGGTGACACTGTTCGCGCTGTCGAACCTGTGGAT
GGCGCGCCGACATTTGCTGACGAATGCAGGAGAGGTGCGTCTGTAATGCGGGAAATGGCCGGCGCGAGGTGCTCGCGCCGGCTATAAATCCGGAAAGAGG
GGATGATTTGATCGTTTTTTAGCCGAATCACCGTTTTGAAATCGGCAAGGGCTGGAGTCAGCCAGAAATACCTGACTACTTCAGACCATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
979 bp | 326 aa | 68 | 1046 | + | No |
Chemistry : DDE
ORF sequence :
MKQMTFADAEYAGKRKQTRKELFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYQLMAMLRVHLMQNWFGYSDPAMEEALYETTILRQFAGLNLERIPDE
TTILNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGADAESGLVHSVVGTAANVAD
VTQVDKLLHGKENMVGADAGYTGVEKRPEHEGREVIWQIAARRSMYKKLSKRSALYKAKRKIEKSKAQVRAKVEHPFRVIKRQFGYVKTRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTNAGEVRL
TTILNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKAHIGADAESGLVHSVVGTAANVAD
VTQVDKLLHGKENMVGADAGYTGVEKRPEHEGREVIWQIAARRSMYKKLSKRSALYKAKRKIEKSKAQVRAKVEHPFRVIKRQFGYVKTRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTNAGEVRL
Blast result :
Comments
ISPst5 was detected after transposition into a pUC-based plasmid which replicates (albeit poorly) in Pseudmonas stutzeri strain Q. ISPst5 was found inserted at exactly the same location (upstream of pUC origin of replication) in two independent experiments. We suspect that ISPst5 activates the origin of replication of the plasmid.
ISPst5 is 96% aa similar to IS1384.
ISPst5 is also found in Bordetella petrii DSM 12804 genome ( transposase is 99% aa similar) with accession number NC_010170.
ISPst5 is 96% aa similar to IS1384.
ISPst5 is also found in Bordetella petrii DSM 12804 genome ( transposase is 99% aa similar) with accession number NC_010170.
References
1] Nick Coleman (2005) Direct submission