Transposon
Name: TnpHS87a       (Synonyms: Tn7223)
Family: Tn402
Evidence of Transposition: Yes
 Host     

Host Organism:Pseudomonas aeruginosa strain HS87 Molecular Source:plasmid pHS87a
Place of Origin:Shanghai, China Date of Isolation:2016
Other Geographic Information:sputum of an inpatient

 Map     



 Terminal Inverted Repeats (IR)     


 Sequence     
DNA SequenceLength  6724 
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAGTT GATTGGGCGT AATGGCTGTT GTGCAGCCAG CTCCTGACAG TTCAATATCA GAAGTGATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGAG CATGGCGACG GACACCCCAC GGATTCCAGA ACAAGGCGTG GCCACTCTGC CTGATGAGGC 200
TTGGGAGCGT GCGCGCCGTC GTGCGGAGAT CATCAGTCCG TTGGCGCAGT CGGAGACGGT CGGGCACGAA GCGGCCGATA TGGCGGCTCA GGCGCTGGGC 300
TTGTCTCGGC GCCAGGTATA CGTTCTGATC CGGCGTGCCC GGCAAGGCAG CGGCCTCGTG ACGGATCTGG TGCCCGGCCA GTCCGGTGGA GGTAAAGGTA 400
AGGGGCGCTT GCCGGAACCG GTCGAGCGCG TCATCCACGA GCTACTGCAA AAGCGGTTCC TGACCAAGCA GAAGCGCAGC CTAGCGGCCT TTCACCGCGA 500
AGTCACTCAG GTGTGCAAGG CTCAAAAACT GCGAGTGCCG GCGCGCAATA CCGTGGCCTT ACGGATCGCT AGCCTTGACC CGCGCAAGGT CATCCGCCGG 600
CGGGAAGGCC AGGATGCCGC TCGTGACCTA CAAGGTGTGG GCGGCGAGCC TCCTGCCGTG ACCGCGCCGC TGGAGCAGGT GCAGATAGAC CATACGGTCA 700
TCGACCTGAT CGTGGTCGAT GACCGCGACC GGCAACCTAT TGGCCGCCCG TACCTGACCC TCGCCATCGA CGTGTTCACC CGCTGCGTGC TCGGCATGGT 800
CGTCACGCTG GAAGCGCCGT CTGCCGTTTC GGTTGGCCTG TGCCTCGTGC ATGTCGCCTG CGACAAGCGC CCTTGGCTGG AAGGACTGAA CGTGGAAATG 900
GATTGGCAGA TGAGCGGCAA GCCCTTGCTG CTCTACCTAG ACAACGCGGC CGAGTTCAAG AGCGAGGCCC TGCGCCGGGG TTGCGAGCAG CATGGCATCC 1000
GGCTGGACTA TCGCCCGCTG GGACAGCCGC ACTATGGCGG CATCGTGGAA CGGATCATCG GCACGGCGAT GCAGATGATT CACGACGAAC TGCCGGGAAC 1100
GACCTTCTCC AACCCTGACC AGCGCGGCGA CTACGATTCC GAAAACAAGG CCGCCCTGAC GCTGCGCGAG CTAGAGCGCT GGCTCACATT GGCGGTCGGC 1200
ACCTACCACG GTTCGGTGCA CAACGGCCTG CTCCAACCGC CGGCCGCGCG CTGGGCCGAG GCCGTGGCGC GTGTCGGCGT ACCGGCCGTC GTCACACGCG 1300
CTACTTCGTT CCTGGTCGAT TTTCTGCCGA TCCTCCGGCG CACGCTGACC CGCACCGGCT TTGTCATCGA CCACATCCAC TACTACGCCG ATGCGCTCAA 1400
GCCGTGGATT GCGCGGCGTG AACGCTGGCC GTCCTTTCTG ATCCGGCGCG ATCCGCGCGA CATCAGCCGT ATCTGGGTCC TGGAACCGGA GGGACAGCAT 1500
TACCTGGAAA TTCCCTACCG TACCTTGTCG CATCCGGCTG TCACCCTCTG GGAACAACGG CAGGCGCTGG CGAAACTGCG GCAGCAAGGG CGCGAACAGG 1600
TGGATGAGTC GGCGCTGTTC CGCATGATCG GCCAGATGCG TGAGATTGTG ACCAGCGCGC AGAAGGCCAC ACGCAAGGCG CGGCGTGACG CGGATCGCCG 1700
CCAGCACCTC AAGACATCAG CTCGGCCGGA CAAGCCCGTT CCGCCGGATA CGGATATTGC CGACCCGCAG GCAGACAACT TGCCACCCGC CAAACCGTTC 1800
GACCAGATTG AGGAGTGGTA GCCGTGGACG AATATCCCAT CATCGACCTG TCCCACCTGC TGCCGGCGGC CCAGGGCTTG GCCCGTCTTC CGGCGGACGA 1900
GCGCATCCAG CGCCTTCGCG CCGACCGCTG GATCGGCTAT CCGCGCGCAG TCGAGGCGCT GAACCGGCTG GAAGCCCTTT ATGCGTGGCC AAACAAGCAA 2000
CGCATGCCCA ACCTGCTGCT GGTTGGCCCG ACCAACAATG GCAAGTCGAT GATCGTCGAG AAGTTCCGCC GCACCCACCC GGCCAGCTCC GACGCCGACC 2100
AGGAGCACAT CCCGGTGTTG GTCGTGCAGA TGCCGTCCGA GCCGTCCGTG ATCCGCTTCT ACGTCGCGCT GCTCGCCGCG ATGGGCGCGC CGCTGCGCCC 2200
ACGCCCACGG TTGCCGGAAA TGGAGCAACT GGCTCTGGCA CTGCTGCGCA AGGTCGGCGT GCGCATGCTG GTGATCGACG AGCTGCACAA CGTGCTGGCC 2300
GGCAACAGCG TCAACCGCCG GGAATTCCTC AACCTGCTGC GCTTCCTCGG CAACGAACTG CGCATCCCGT TGGTTGGGGT AGGCACGCGC GACGCCTACC 2400
TAGCCATCCG CTCCGATGAC CAGTTGGAAA ATCGCTTCGA GCCGATGATG CTGCCGGTAT GGGAGGCCAA CGACGATTGC TGCTCACTGC TGGCCAGCTT 2500
CGCCGCTTCG CTCCCGCTGC GCCGGCCTTC CCCAATTGCC ACGCTGGACA TGGCTCGCTA CCTGCTCACA CGCAGCGAGG GCACCATAGG GGAACTGGCG 2600
CACTTGCTGA TGGCGGCGGC CATCGTCGCC GTGGAGAGCG GCGAGGAAGC GATCAACCAT CGCACACTCA GCATGGCCGT TTACACCGGA CCCAGCGAGC 2700
GGCGGCGGCA ATTCGAGCGG GAACTGATGT GAAGCCTGCG CCGCGCTGGC CGCTGCATCC CGCCCCGAAA GAAGGCGAGG CGCTGTCCTC ATGGCTCAAC 2800
CGCGTGGCCC TTTGCTATCA CATGGAGGAG CCCGACCTGC TGGAGCACGA TCTTGGTCAC GGCCAGGTCG ATGACCTGGA CACCGCGCCA CCACTCTCGC 2900
TGCTGGCGTT GCTTTCCCAG CGGAGCGGCA TCGAGCTGGA CCGGCTGCGC TGTATGAGTT TCGCCGGATG GGTGCCTTGG CTACTGGACA GCCTTGATGA 3000
CCAGATTCCA GACGCCTTGG AAACCTATGC GTTTCAGCTC TCGGTGTTGC TGCCAAGACT CCGCCGTAAG ACGCGATCCA TCACGAGCTG GCGTGCCTGG 3100
CTGCCCAGCC AGCCGATAAA CCGCGCCTGT CCGCTCTGCC TGAGCGATCC GGAGAACCAA GCCGTACTGC TCGCGTGGAA GCTGCCCCTG ATGCTGAGCT 3200
GCCCGCTGCA TGGCTGCTGG CTGGAATCCT ATTGGGGCGT GCCAGGGCGG TTTCTCGGCT GGGAGAACGC CGACGCCGAA CCGCGCACCG CCAGCGACGC 3300
GATTGCGGCG ATGGACCAGC GTACCTGGCA GGCACTGACA ACCGGTCACG TGGAGCTGCC GCGCCGACGC ATCCACGCCG GATTGTGGTT TCGACTTCTT 3400
CGCACGCTGC TCGATGAGCT GAACACCCCG CTTTCCGCGT GCGGAACCTG CGCGGGGTAT CCCCGCCAAG TCTGGGAAGG CTGCGGGCAT CCGCTGCGTG 3500
CTGGGCAAAG TCTGTGGCGA CCGTATGAAA CCCTGAATCC GATAGTACGG TTACAGATGC TGGAGGCGGC GGCAACGGCA ATCAGCTTGA TTGAGGTGAG 3600
GGACATCAGC CCGCCAGGCG AGCAGGCAAA GCTATTCTGG TCCGAGCCCC AAACCGGGTT CACCAGTGGC CTGCCGACGA AAGCGCCGAA GCCCGAGCCC 3700
ATCAATCACT GGCAGCGTGC AGTCCAGGCC ATCGACGAGG CCATCATTGA AGCGCGACAC AACCCCGAGA CGGCACGCTC GCTGTTCGCG TTGGCTTCCT 3800
ATGGTCGGCG CGATCCCGCT TCCTTGGAAC GGTTGCGCGC CACCTTCGTG AAGGAAGGCA TCCCGCCGGA ATTTCTGTCA CATTACCTGC CTGATGCACC 3900
CTTTGCATGT CTTAAACAAA ATGACGGGTT AAGTGACAAA TTTTGACGGA TAGAGCTTTC CGGCTCACAC TGTCACATAA TCGAACGTAT ACGTGACGGG 4000
TGAAAAGGTG CTGATCGGCT ACATGCGGGT ATCGAAGGCG GACGGATCCC AGTCCACCAA TTTGCAACGC GATGCGCTCA TCGCCGCTGG TGTGAGCCTT 4100
GCGCACCTTT ACGAGGATCT GGCCTCGGGC AGGCGCGATG ATCGCCCAGG GTTGGCTGCT TGCCTGAAGG CGCTTCGTGA AGGGGACACG CTGATCGTGT 4200
GGAAGCTCGA TCGGCTTGGC CGTGATCTGC GCCACCTGAT CAACACCGTG CACGACCTAA CTGCGCGTAG CGTGGGCCTG AAGGTCCTGA CCGGTCACGG 4300
TGCGGCGGTC GACACGACGA CTGCCGCCGG CAAGCTTGTG TTCGGTATTT TTGCCGCGCT GGCCGAGTTC GAGCGTGAGT TGATTTCCGA GCGAACAGTC 4400
GCTGGACTTA TCTCGGCGCG CGCTCGCGGC AGGAAAGGGG GGCGCCCCTT CAAGATGACC GCCGCCAAGC TACGCCTGGC GATGGCCAGC ATGGGGCAAC 4500
CGGAAACCAA GGTGGGCGAT CTCTGCGAAG AACTCGGGAT TACCCGGCAG ACGCTCTACC GGCACGTGTC GCCCAAGGGC GAACTGCGGC CAGACGGCGT 4600
AAAGCTGCTC TCCCTCGGTT CAGCCGCATA AATGGAGGCG ACCTGGAACG GGGCGCTGTT CAGTGCGGCA ACGATCCGAT TACCGGTGTC GACCCAGAGC 4700
AGCCGTAGAG CTTTTGGGAA AGCTGTCGTT CAACGTTTGA CATGAGGGGC GGCCAAGGGC GCCAGCCCTT GGACGTCCCC CTCGATGGAA GGGTTAGGCA 4800
TCACTGCGTG TTCGCTCGAA TGCCTGGCGT GTTTGAACCA TGTACACGGC TGGACCATCT GGGGTGGTTA CGGTACCTTG CCTCTCAAAC CCCGCTTTCT 4900
CGTAGCATCG GATCGCTCGC AAGTTGCTCG GCGACGGGTC CGTTTGGATC TTGGTGACCT CGGGATCATT GAACAGCAAC TCAACCAGTG CTCGAACCAG 5000
CTTGGTTCCC AAGCCTTTGC CCAGTTGTGA TGCATTCGCC AGTGACTGGT CTATTCCGCG TACTCCTGGA TCGGTTTCTT CTTCCCACCA TCCGTCCCCG 5100
CTTCCAAGAG CAACGTACGA CTGGGCATAC CCAATCGGCT CTCCATTCAG CATTGCAATG TATGGAGTGA CGGACTCTTG CGCTAAAACG CTTGGCAAGT 5200
ACTGTTCCTG TACGTCAGCA AGTGTCGGGC GTGCTTCTTC TCCGCCCCAC CACTCGACGA TATGAGATCG ATTTAGCCAC TCATAGAGCA TCGCAAGGTC 5300
ATGCTCAGTC ATGAGGCGCA GTGTGACGGA ATCGTTGCTG TTGGTCACGA TGCTGTACTT TGTGATGCCT AACTTTGTTT TAGGGCGACT GCCCTGCTGC 5400
GTAACATCGT TGCTGCTCCA TAACATCAAA CATCGACCCA CGGCGTAACG CGCTTGCTGC TTGGATGCCC GAGGCATAGA CTGTACAAAA AAACAGTCAT 5500
AACAAGCCAT GAAAACCGCC ACTGCGCCGT TACCACCGCT GCGTTCGGTC AAGGTTCTGG ACCAGTTGCG TGAGCGCATA CGCTACTTGC ATTACAGTTT 5600
ACGAACCGAA CAGGCTTATG TCAACTGGGT TCGTGCCTTC ATCCGTTTCC ACGGTGTGCG TCACCCGGCA ACCTTGGGCA GCAGCGAAGT CGAGGCATTT 5700
CTGTCCTGGC TGGCGAACGA GCGCAAGGTT TCGGTCTCCA CGCATCGTCA GGCATTGGCG GCCTTGCTGT TCTTCTACGG CAAGGTGCTG TGCACGGATC 5800
TGCCCTGGCT TCAGGAGATC GGAAGACCTC GGCCGTCGCG GCGCTTGCCG GTGGTGCTGA CCCCGGATGA AGTGGTTCGC ATCCTCGGTT TTCTGGAAGG 5900
CGAGCATCGT TTGTTCGCCC AGCTTCTGTA TGGAACGGGC ATGCGGATCA GTGAGGGTTT GCAACTGCGG GTCAAGGATC TGGATTTCGA TCACGGCACG 6000
ATCATCGTGC GGGAGGGCAA GGGCTCCAAG GATCGGGCCT TGATGTTACC CGAGAGCTTG GCACCCAGCC TGCGCGAGCA GCTGTCGCGT GCACGGGCAT 6100
GGTGGCTGAA GGACCAGGCC GAGGGCCGCA GCGGCGTTGC GCTTCCCGAC GCCCTTGAGC GGAAGTATCC GCGCGCCGGG CATTCCTGGC CGTGGTTCTG 6200
GGTTTTTGCG CAGCACACGC ATTCGACCGA TCCACGGAGC GGTGTCGTGC GTCGCCATCA CATGTATGAC CAGACCTTTC AGCGCGCCTT CAAACGTGCC 6300
GTAGAACAAG CAGGCATCAC GAAGCCCGCC ACACCGCACA CCCTCCGCCA CTCGTTCGCG ACGGCCTTGC TCCGCAGCGG TTACGACATT CGAACCGTGC 6400
AGGATCTGCT CGGCCATTCC GACGTCTCTA CGACGATGAT TTACACGCAT GTGCTGAAAG TTGGCGGTGC CGGAGTGCGC TCACCGCTTG ATGCGCTGCC 6500
GCCCCTCACT AGTGAGAGGT AGGGCAGCGC AAGTCAATCC TGGCGGATTC ACTACCCCTG CGCGAAGGCC ATCGGTGCCG CATCGAACGG CCGGTTGCGG 6600
AAAGTCCTCC CTGCGTCCGC TGATGGCCGG CAGCAGCCCG TCGTTGCCTG ATGGATCCAA CCCCTCCGCT GCTATAGTGC AGTCGGCTTC TGACGTTCAG 6700
TGCAGCCGTC TTCTGAAAAC GACA

 Recombination Sites     

Name Coordinates Gene Sequence
r6 3824-3837 14 TTGGAACGGT TGCG
r5 3870-3883 14 AATTTCTGTC ACAT
r4 3875-3888 14 CTGTCACATT ACCT
r3 3926-3939 14 GGGTTAAGTG ACAA
res 3967-4001 35 ACACTGTCAC ATAATCGAAC GTATACGTGA CGGGT
r2 3970-3983 14 CTGTCACATA ATCG
r1 3986-3999 14 CGTATACGTG ACGG
attC AAC(6')-Ib core 4734-4799 66 CGTTTGACAT GAGGGGCGGC CAAGGGCGCC AGCCCTTGGA CGTCCCCCTC GATGGAAGGG
TTAGGC
attI 5373-5428 56 CTTTGTTTTA GGGCGACTGC CCTGCTGCGT AACATCGTTG CTGCTCCATA ACATCA

 ORFs     
ORF Summary
Gene Name Associated TE Coordinates Class Sub Class Orientation
tniA TnpHS87a 142-1821 Transposase   +
tniB TnpHS87a 1824-2732 Accessory Gene   +
tniQ TnpHS87a 2729-3946 Accessory Gene Target Site Selection +
tniR TnpHS87a 4008-4631 Accessory Gene Resolvase +
AAC(6')-Ib10 (ARO:3002581) TnpHS87a 4794-5348 Passenger Gene Antibiotic Resistance -
intI1 TnpHS87a 5509-6522 Integron Integrase Class 1 +

ORF Details
Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniA TniA TnpHS87a 1680 142-1821 +
Class:   Transposase
Transpoase Chemistry:   DDE
Comment:   can be extended upstream by 12 amino acids| identical to tniA (Tn1721 and In2)| 25% amino acid sequence identity to TnsB from Tn7
Protein Sequence:  
MATDTPRIPE QGVATLPDEA WERARRRAEI ISPLAQSETV GHEAADMAAQ ALGLSRRQVY VLIRRARQGS GLVTDLVPGQ SGGGKGKGRL PEPVERVIHE
LLQKRFLTKQ KRSLAAFHRE VTQVCKAQKL RVPARNTVAL RIASLDPRKV IRRREGQDAA RDLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDDRDRQPI
GRPYLTLAID VFTRCVLGMV VTLEAPSAVS VGLCLVHVAC DKRPWLEGLN VEMDWQMSGK PLLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WAEAVARVGV PAVVTRATSF LVDFLPILRR
TLTRTGFVID HIHYYADALK PWIARRERWP SFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALAKLR QQGREQVDES ALFRMIGQMR
EIVTSAQKAT RKARRDADRR QHLKTSARPD KPVPPDTDIA DPQADNLPPA KPFDQIEEW

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniB TniB TnpHS87a 909 1824-2732 +
Class:   Accessory Gene
Sequence Family:  ATP binding protein?
Comment:   identical to tniB (Tn1721)| similar function to Tn7 tnsC and MuB
Protein Sequence:  
MDEYPIIDLS HLLPAAQGLA RLPADERIQR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLVGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSPIAT LDMARYLLTR SEGTIGELAH LLMAAAIVAV ESGEEAINHR TLSMAVYTGP SERRRQFERE
LM

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniQ TniQ TnpHS87a 1218 2729-3946 +
Class:   Accessory Gene
Sub Class:   Target Site Selection
Comment:   identical to tniQ (Tn1721)|similar function to Tn7 tnsD?
Protein Sequence:  
MKPAPRWPLH PAPKEGEALS SWLNRVALCY HMEEPDLLEH DLGHGQVDDL DTAPPLSLLA LLSQRSGIEL DRLRCMSFAG WVPWLLDSLD DQIPDALETY
AFQLSVLLPR LRRKTRSITS WRAWLPSQPI NRACPLCLSD PENQAVLLAW KLPLMLSCPL HGCWLESYWG VPGRFLGWEN ADAEPRTASD AIAAMDQRTW
QALTTGHVEL PRRRIHAGLW FRLLRTLLDE LNTPLSACGT CAGYPRQVWE GCGHPLRAGQ SLWRPYETLN PIVRLQMLEA AATAISLIEV RDISPPGEQA
KLFWSEPQTG FTSGLPTKAP KPEPINHWQR AVQAIDEAII EARHNPETAR SLFALASYGR RDPASLERLR ATFVKEGIPP EFLSHYLPDA PFACLKQNDG
LSDKF

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniR TniR TnpHS87a 624 4008-4631 +
Class:   Accessory Gene
Sub Class:   Resolvase
Transpoase Chemistry:   Serine
Sequence Family:  Serine Site-Specific Recombinase
Comment:   resolution of cointegrates || Protein: ACE81792.1 || identical to tniR (Tn1721)
Protein Sequence:  
MLIGYMRVSK ADGSQSTNLQ RDALIAAGVS LAHLYEDLAS GRRDDRPGLA ACLKALREGD TLIVWKLDRL GRDLRHLINT VHDLTARSVG LKVLTGHGAA
VDTTTAAGKL VFGIFAALAE FERELISERT VAGLISARAR GRKGGRPFKM TAAKLRLAMA SMGQPETKVG DLCEELGITR QTLYRHVSPK GELRPDGVKL
LSLGSAA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
AAC(6')-Ib10 (ARO:3002581) AAC(6')-Ib10 TnpHS87a 555 4794-5348 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Transpoase Chemistry:   aminoglycoside acetyltransferase
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  AAC(6') (ARO:3000345)
Comment:   strict match to reference sequence for ARO:3002581 (bitscore: 377)
Protein Sequence:  
MTNSNDSVTL RLMTEHDLAM LYEWLNRSHI VEWWGGEEAR PTLADVQEQY LPSVLAQESV TPYIAMLNGE PIGYAQSYVA LGSGDGWWEE ETDPGVRGID
QSLANASQLG KGLGTKLVRA LVELLFNDPE VTKIQTDPSP SNLRAIRCYE KAGFERQGTV TTPDGPAVYM VQTRQAFERT RSDA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
intI1 IntI1 TnpHS87a 1014 5509-6522 +
Class:   Integron Integrase
Sub Class:   Class 1
Transpoase Chemistry:   Tyrosine
Sequence Family:  Class 1 Integron Tyrosine Integrase
Protein Sequence:  
MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVNW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGSKDRALML PESLAPSLRE QLSRARAWWL
KDQAEGRSGV ALPDALERKY PRAGHSWPWF WVFAQHTHST DPRSGVVRRH HMYDQTFQRA FKRAVEQAGI TKPATPHTLR HSFATALLRS GYDIRTVQDL
LGHSDVSTTM IYTHVLKVGG AGVRSPLDAL PPLTSER

 Internal Repeat Elements     

Name Associated Mobile Element Coordinates Sequence (Top Strand)
repeat t1 TnpHS87a 9-27 TCAGAAGACG ACTGCACCA
repeat t2 TnpHS87a 49-67 AACACGTCGG TCGAGGACT
repeat t3 TnpHS87a 78-97 TCAGAAGTGA TCTGCACCAA
repeat t4 TnpHS87a 110-128 TCAATACTCG TGTGCACCA
repeat i4 TnpHS87a 6605-6623 AGGAGGGACG CAGGCGACT
repeat i3 TnpHS87a 6633-6651 CGTCGGGCAG CAACGGACT
repeat i2 TnpHS87a 6675-6693 ATCACGTCAG CCGAAGACT
IRi TnpHS87a 6692-6724 CTGCAAGTCA CGTCGGCAGA AGACTTTTGC TGT

 References