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Internal Transposable Elements | |
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| Name: TnXorYNA12 (Synonyms: Tn7226) |
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| Family: Tn402 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Xanthomonas oryzae pv. oryzae strain YNA12-2 | | |
| Place of Origin: | Yunnan Province, China | Date of Isolation: | 2013 |
| | Other Geographic Information: | 2007 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAGTT GATTGGGCGT AATGGCTGTT GTGCAGCCAG CTCCTGACAG TTCAATATCA GAAGTGATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGAG CATGGCGACG GACACCCCAC GGATTCCAGA ACAAGGCGTG GCCACTCTGC CTGATGAGGC 200
TTGGGAGCGT GCGCGCCGTC GTGCGGAGAT CATCAGTCCG TTGGCGCAGT CGGAGACGGT CGGGCACGAA GCGGCCGATA TGGCGGCTCA GGCGCTGGGC 300
TTGTCTCGGC GCCAGGTATA CGTTCTGATC CGGCGTGCCC GGCAAGGCAG CGGCCTCGTG ACGGATCTGG TGCCCGGCCA GTCCGGTGGA GGTAAAGGTA 400
AGGGGCGCTT GCCGGAACCG GTCGAGCGCG TCATCCACGA GCTACTGCAA AAGCGGTTCC TGACCAAGCA GAAGCGCAGC CTAGCGGCCT TTCACCGCGA 500
AGTCACTCAG GTGTGCAAGG CTCAAAAACT GCGAGTGCCG GCGCGCAATA CCGTGGCCTT ACGGATCGCT AGCCTTGACC CGCGCAAGGT CATCCGCCGG 600
CGGGAAGGCC AGGATGCCGC TCGTGACCTA CAAGGTGTGG GCGGCGAGCC TCCTGCCGTG ACCGCGCCGC TGGAGCAGGT GCAGATAGAC CATACGGTCA 700
TCGACCTGAT CGTGGTCGAT GACCGCGACC GGCAACCTAT TGGCCGCCCG TACCTGACCC TCGCCATCGA CGTGTTCACC CGCTGCGTGC TCGGCATGGT 800
CGTCACGCTG GAAGCGCCGT CTGCCGTTTC GGTTGGCCTG TGCCTCGTGC ATGTCGCCTG CGACAAGCGC CCTTGGCTGG AAGGACTGAA CGTGGAAATG 900
GATTGGCAGA TGAGCGGCAA GCCCTTGCTG CTCTACCTAG ACAACGCGGC CGAGTTCAAG AGCGAGGCCC TGCGCCGGGG TTGCGAGCAG CATGGCATCC 1000
GGCTGGACTA TCGCCCGCTG GGACAGCCGC ACTATGGCGG CATCGTGGAA CGGATCATCG GCACGGCGAT GCAGATGATT CACGACGAAC TGCCGGGAAC 1100
GACCTTCTCC AACCCTGACC AGCGCGGCGA CTACGATTCC GAAAACAAGG CCGCCCTGAC GCTGCGCGAG CTAGAGCGCT GGCTCACATT GGCGGTCGGC 1200
ACCTACCACG GTTCGGTGCA CAACGGCCTG CTCCAACCGC CGGCCGCGCG CTGGGCCGAG GCCGTGGCGC GTGTCGGCGT ACCGGCCGTC GTCACACGCG 1300
CTACTTCGTT CCTGGTCGAT TTTCTGCCGA TCCTCCGGCG CACGCTGACC CGCACCGGCT TTGTCATCGA CCACATCCAC TACTACGCCG ATGCGCTCAA 1400
GCCGTGGATT GCGCGGCGTG AACGCTGGCC GTCCTTTCTG ATCCGGCGCG ATCCGCGCGA CATCAGCCGT ATCTGGGTCC TGGAACCGGA GGGACAGCAT 1500
TACCTGGAAA TTCCCTACCG TACCTTGTCG CATCCGGCTG TCACCCTCTG GGAACAACGG CAGGCGCTGG CGAAACTGCG GCAGCAAGGG CGCGAACAGG 1600
TGGATGAGTC GGCGCTGTTC CGCATGATCG GCCAGATGCG TGAGATTGTG ACCAGCGCGC AGAAGGCCAC ACGCAAGGCG CGGCGTGACG CGGATCGCCG 1700
CCAGCACCTC AAGACATCAG CTCGGCCGGA CAAGCCCGTT CCGCCGGATA CGGATATTGC CGACCCGCAG GCAGACAACT TGCCACCCGC CAAACCGTTC 1800
GACCAGATTG AGGAGTGGTA GCCGTGGACG AATATCCCAT CATCGACCTG TCCCACCTGC TGCCGGCGGC CCAGGGCTTG GCCCGTCTTC CGGCGGACGA 1900
GCGCATCCAG CGCCTTCGCG CCGACCGCTG GATCGGCTAT CCGCGCGCAG TCGAGGCGCT GAACCGGCTG GAAGCCCTTT ATGCGTGGCC AAACAAGCAA 2000
CGCATGCCCA ACCTGCTGCT GGTTGGCCCG ACCAACAATG GCAAGTCGAT GATCGTCGAG AAGTTCCGCC GCACCCACCC GGCCAGCTCC GACGCCGACC 2100
AGGAGCACAT CCCGGTGTTG GTCGTGCAGA TGCCGTCCGA GCCGTCCGTG ATCCGCTTCT ACGTCGCGCT GCTCGCCGCG ATGGGCGCGC CGCTGCGCCC 2200
ACGCCCACGG TTGCCGGAAA TGGAGCAACT GGCTCTGGCA CTGCTGCGCA AGGTCGGCGT GCGCATGCTG GTGATCGACG AGCTGCACAA CGTGCTGGCC 2300
GGCAACAGCG TCAACCGCCG GGAATTCCTC AACCTGCTGC GCTTCCTCGG CAACGAACTG CGCATCCCGT TGGTTGGGGT AGGCACGCGC GACGCCTACC 2400
TAGCCATCCG CTCCGATGAC CAGTTGGAAA ATCGCTTCGA GCCGATGATG CTGCCGGTAT GGGAGGCCAA CGACGATTGC TGCTCACTGC TGGCCAGCTT 2500
CGCCGCTTCG CTCCCGCTGC GCCGGCCTTC CCCAATTGCC ACGCTGGACA TGGCTCGCTA CCTGCTCACA CGCAGCGAGG GCACCATAGG GGAACTGGCG 2600
CACTTGCTGA TGGCGGCGGC CATCGTCGCC GTGGAGAGCG GCGAGGAAGC GATCAACCAT CGCACACTCA GCATGGCCGT TTACACCGGA CCCAGCGAGC 2700
GGCGGCGGCA ATTCGAGCGG GAACTGATGT GAAGCCTGCG CCGCGCTGGC CGCTGCATCC CGCCCCGAAA GAAGGCGAGG CGCTGTCCTC ATGGCTCAAC 2800
CGCGTGGCCC TTTGCTATCA CATGGAGGAG CCCGACCTGC TGGAGCACGA TCTTGGTCAC GGCCAGGTCG ATGACCTGGA CACCGCGCCA CCACTCTCGC 2900
TGCTGGCGTT GCTTTCCCAG CGGAGCGGCA TCGAGCTGGA CCGGCTGCGC TGTATGAGTT TCGCCGGATG GGTGCCTTGG CTACTGGACA GCCTTGATGA 3000
CCAGATTCCA GACGCCTTGG AAACCTATGC GTTTCAGCTC TCGGTGTTGC TGCCAAGACT CCGCCGTAAG ACGCGATCCA TCACGAGCTG GCGTGCCTGG 3100
CTGCCCAGCC AGCCGATAAA CCGCGCCTGT CCGCTCTGCC TGAGCGATCC GGAGAACCAA GCCGTACTGC TCGCGTGGAA GCTGCCCCTG ATGCTGAGCT 3200
GCCCGCTGCA TGGCTGCTGG CTGGAATCCT ATTGGGGCGT GCCAGGGCGG TTTCTCGGCT GGGAGAACGC CGACGCCGAA CCGCGCACCG CCAGCGACGC 3300
GATTGCGGCG ATGGACCAGC GTACCTGGCA GGCACTGACA ACCGGTCACG TGGAGCTGCC GCGCCGACGC ATCCACGCCG GATTGTGGTT TCGACTTCTT 3400
CGCACGCTGC TCGATGAGCT GAACACCCCG CTTTCCGCGT GCGGAACCTG CGCGGGGTAT CCCCGCCAAG TCTGGGAAGG CTGCGGGCAT CCGCTGCGTG 3500
CTGGGCAAAG TCTGTGGCGA CCGTATGAAA CCCTGAATCC GATAGTACGG TTACAGATGC TGGAGGCGGC GGCAACGGCA ATCAGCTTGA TTGAGGTGAG 3600
GGACATCAGC CCGCCAGGCG AGCAGGCAAA GCTATTCTGG TCCGAGCCCC AAACCGGGTT CACCAGTGGC CTGCCGACGA AAGCGCCGAA GCCCGAGCCC 3700
ATCAATCACT GGCAGCGTGC AGTCCAGGCC ATCGACGAGG CCATCATTGA AGCGCGACAC AACCCCGAGA CGGCACGCTC GCTGTTCGCG TTGGCTTCCT 3800
ATGGTCGGCG CGATCCCGCT TCCTTGGAAC GGTTGCGCGC CACCTTCGTG AAGGAAGGCA TCCCGCCGGA ATTTCTGTCA CATTACCTGC CTGATGCACC 3900
CTTTGCATGT CTTAAACAAA ATGACGGGTT AAGTGACAAA TTTTGACGGA TAGAGCTTTC CGGCTCACAC TGTCACATAA TCGAACGTAT ACGTGACGGG 4000
TGAAAAGGTG CTGATCGGCT ACATGCGGGT ATCGAAGGCG GACGGATCCC AGTCCACCAA TTTGCAACGC GATGCGCTCA TCGCCGCTGG TGTGAGCCTT 4100
GCGCACCTTT ACGAGGATCT GGCCTCGGGC AGGCGCGATG ATCGCCCAGG GTTGGCTGCT TGCCTGAAGG CGCTTCGTGA AGGGGACACG CTGATCGTGT 4200
GGAAGCTCGA TCGGCTTGGC CGTGATCTGC GCCACCTGAT CAACACCGTG CACGACCTAA CTGCGCGTAG CGTGGGCCTG AAGGTCCTGA CCGGTCACGG 4300
TGCGGCGGTC GACACGACGA CTGCCGCCGG CAAGCTTGTG TTCGGTATTT TTGCCGCGCT GGCCGAGTTC GAGCGTGAGT TGATTTCCGA GCGAACAGTC 4400
GCTGGACTTA TCTCGGCGCG CGCTCGCGGC AGGAAAGGGG GGCGCCCCTT CAAGATGACC GCCGCCAAGC TACGCCTGGC GATGGCCAGC ATGGGGCAAC 4500
CGGAAACCAA GGTGGGCGAT CTCTGCGAAG AACTCGGGAT TACCCGGCAG ACGCTCTACC GGCACGTGTC GCCCAAGGGC GAACTGCGGC CAGACGGCGT 4600
AAAGCTGCTC TCCCTCGGTT CAGCCGCATA AATGGAGGCG ACCTGGAACG GGGCGCTGTT CAGTGCGGCA ACGATCCGAT TACCGGTGTC GACCCAGAGC 4700
AGCCGTAGAG CTTTTGGGAA AGCTGTCGTT CAACGCTTGA GTTAAGCCGC GCCGCGAAGC GGCGTCGGCT TGAACGAATT GTTAGACATT ATTTGCCGAC 4800
TACCTTGGTG ATCTCGCCTT TCACGTAGTG AACAAATTCT TCCAACTGAT CTGCGCGCGA GGCCAAGCGA TCTTCTTCTT GTCCAAGATA AGCCTGTCTA 4900
GCTTCAAGTA TGACGGGCTG ATACTGGGCC GGCAGGCGCT CCATTGCCCA GTCGGCAGCG ACATCCTTCG GCGCGATTTT GCCGGTTACT GCGCTGTACC 5000
AAATGCGGGA CAACGTAAGC ACTACATTTC GCTCATCGCC AGCCCAGTCG GGCGGCGAGT TCCATAGCGT TAAGGTTTCA TTTAGCGCCT CAAATAGATC 5100
CTGTTCAGGA ACCGGATCAA AGAGTTCCTC CGCCGCTGGA CCTACCAAGG CAACGCTATG TTCTCTTGCT TTTGTCAGCA AGATAGCCAG ATCAATGTCG 5200
ATCGTGGCTG GCTCGAAGAT ACCTGCAAGA ATGTCATTGC GCTGCCATTC TCCAAATTGC AGTTCGCGCT TAGCTGGATA ACGCCACGGA ATGATGTCGT 5300
CGTGCACAAC AATGGTGACT TCTACAGCGC GGAGAATCTC GCTCCCTCCA GGGGAAGCCG AAGTTTCCAA AAGGTCGTTG ATCAAAGCTC GCCGCGTTGT 5400
TTCATCAAGC CTTACGGTCA CCGTAACCAG CAAATCAATA TCACTGTGTG GCTTCAGGCC GCCATCCACT GCGGAGCCGT ACAAATGTAC GGCCAGCAAC 5500
GTCGGTTCGA GATGGCGCTC GATGACGCCA ACTACCTCTG ATAGTTGAGT CGATACTTCG GCGATCATCG CTTCCCTCAT GATGTTTAAC GCCGCCATAA 5600
ACGGCGACAG GGTGGCGCGC CTATTGCGCA TAAAATGGCG AAGCCATGCG CAACAGGCGC GGAATCTCTG GCGTCCGGTT TGATGGCTTT GTTATGCAAA 5700
GGACTAGTCT TCAATGACGT GTAAACCACG GCGCTTTAAG TCCTCCAACG AATCCAACAT TCCCCTTATT AATTCAACAG GATGCCCCTC CCAGTCTTCA 5800
ACAACGCCAA CAATTCTCAA GGGTTCGCAG GTTCTATAGG ACTGTGTTGG ATTACCGGGA AATCTTTTGT TCGTAAGATT CGGATCGTCT TCGAACGGTC 5900
CTGTTGGCTC AACTATGTAT ATGTAGCCGC GACCCTCGAG GCCAGACAGT GACATAGCAA GTTCAGCTCC CCAAACTGCT GGCTCCATCA AGGCTGAAAA 6000
GTAGATGTGC TTAAGAATAC GACCGTCCTC GAAATGAGAG ATGAACCCTG TGGTTAGCAA GTCACCAATC GCCAAATTGG CTTTGGTTCC ATGATAGAAC 6100
GGTCCTTGCA CCTGCTTGTA ATTATCATGA GAGATGGGAA TCCAATCTTT TACCATTTTA AGACCCTTAA TTGTTGGGAT TTGGCTGCAT AACACCTGAA 6200
TTAAGCCGCG CCGCGAAGCG GCGTCGGCTT GAATGAGTTG TTAGGCAACA CCGCGCTTTC TCTCGAAGGC TTGTCGTGTT TGAACCATGT AAACCGCCGG 6300
CCCGTCAGGC GTGGTGATGA TCTTCTCCCG CACGAATCCT GCCTTCTCAT AGCAGCGTAT GGCTCGATGG TTGTTCGGAG TCGGGTCGGT CTGAATCTTC 6400
GTCACGGTGG GGTCCGAGAA CAGTAGTTCA ACGAGAGCGC GGACAAGCCT TGTTCCTAGG CCTTTGTTCA ACTGTGTCGG GTCAGCCAGA GACTGGTCTA 6500
TTCCTCGCAC TCCTGGATCA GTTTCATCTT CCCACCAGCC ATCACCGCTT CCGAGCGCGA CGTACGACTG AGCATAGCCG ATCGGTTCCT CGCCCAGCAT 6600
TGCGATGTAC GGTGTTACGG ACTCTTCCGC CATCGCTCTG GGCAGGTAGT GTTCCAGCAC TTCATCAAGA GTCGGTCGCT CTTCGTCACC ACCCCACCAC 6700
TCAACGATGT GCGGCCGGTT GAGCCAATCA TGGAGCATCG GCAGGTCGCG CTCGGTCATG AGGCGAAGAG TTATGGGGGG GGTGCTCGCG GACATGAAAT 6800
GGTCGCTCTG TGCTGCCTAA CTTTGTTATG GAACGGGCAT GCGGATCAGT GAGGGTTTGC AACTGCGGGT CAAGGATCTG GATTTCGATC ACGGCACGAT 6900
CATCGTGCGG GAGGGCAAGG GCTCCAAGGA TCGGGCCTTG ATGTTACCCG AGAGCTTGGC ACCCAGCCTG CGCGAGCAGC TGTCGCGTGC ACGGGCATGG 7000
TGGCTGAAGG ACCAGGCCGA GGGCCGCAGC GGCGTTGCGC TTCCCGACGC CCTTGAGCGG AAGTATCCGC GCGCCGGGCA TTCCTGGCCG TGGTTCTGGG 7100
TTTTTGCGCA GCACACGCAT TCGACCGATC CACGGAGCGG TGTCGTGCGT CGCCATCACA TGTATGACCA GACCTTTCAG CGCGCCTTCA AACGTGCCGT 7200
AGAACAAGCA GGCATCACGA AGCCCGCCAC ACCGCACACC CTCCGCCACT CGTTCGCGAC GGCCTTGCTC CGCAGCGGTT ACGACATTCG AACCGTGCAG 7300
GATCTGCTCG GCCATTCCGA CGTCTCTACG ACGATGATTT ACACGCATGT GCTGAAAGTT GGCGGTGCCG GAGTGCGCTC ACCGCTTGAT GCGCTGCCGC 7400
CCCTCACTAG TGAGAGGTAG GGCAGCGCAA GTCAATCCTG GCGGATTCAC TACCCCTGCG CGAAGGCCAT CGGTGCCGCA TCGAACGGCC GGTTGCGGAA 7500
AGTCCTCCCT GCGTCCGCTG ATGGCCGGCA GCAGCCCGTC GTTGCCTGAT GGATCCAACC CCTCCGCTGC TATAGTGCAG TCGGCTTCTG ACGTTCAGTG 7600
CAGCCGTCTT CTGAAAATGA CA
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| r6 |
3824-3837 |
14 |
TTGGAACGGT TGCG |
| r5 |
3870-3883 |
14 |
AATTTCTGTC ACAT |
| r4 |
3875-3888 |
14 |
CTGTCACATT ACCT |
| r3 |
3926-3939 |
14 |
GGGTTAAGTG ACAA |
| res |
3967-4001 |
35 |
ACACTGTCAC ATAATCGAAC GTATACGTGA CGGGT |
| r2 |
3970-3983 |
14 |
CTGTCACATA ATCG |
| r1 |
3986-3999 |
14 |
CGTATACGTG ACGG |
| attC aadA1 core |
4728-4787 |
60 |
GTTCAACGCT TGAGTTAAGC CGCGCCGCGA AGCGGCGTCG GCTTGAACGA ATTGTTAGAC
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| attC arr-3 core |
5591-5697 |
107 |
GCCGCCATAA ACGGCGACAG GGTGGCGCGC CTATTGCGCA TAAAATGGCG AAGCCATGCG
CAACAGGCGC GGAATCTCTG GCGTCCGGTT TGATGGCTTT GTTATGC |
| attC AAC(6')-IIa core |
6187-6246 |
60 |
GCATAACACC TGAATTAAGC CGCGCCGCGA AGCGGCGTCG GCTTGAATGA GTTGTTAGGC
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tniA |
TnXorYNA12 |
142-1821 |
Transposase |
|
+ |
| tniB |
TnXorYNA12 |
1824-2732 |
Accessory Gene |
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+ |
| tniQ |
TnXorYNA12 |
2729-3946 |
Accessory Gene |
Target Site Selection |
+ |
| tniR |
TnXorYNA12 |
4008-4631 |
Accessory Gene |
Resolvase |
+ |
| aadA (ARO:3002601) |
TnXorYNA12 |
4789-5580 |
Passenger Gene |
Antibiotic Resistance |
- |
| arr-3 (ARO:3002848) |
TnXorYNA12 |
5704-6195 |
Passenger Gene |
Antibiotic Resistance |
- |
| AAC(6')-IIa (ARO:3002594) |
TnXorYNA12 |
6241-6795 |
Passenger Gene |
Antibiotic Resistance |
- |
| intI1 |
TnXorYNA |
6839-7420 |
Integron Integrase |
Class 1 |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniA |
TniA |
TnXorYNA12 |
1680 |
142-1821 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
| Comment: | can be extended upstream by 12 amino acids| identical to tniA (Tn1721 and In2)| 25% amino acid sequence identity to TnsB from Tn7 |
Protein Sequence:
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MATDTPRIPE QGVATLPDEA WERARRRAEI ISPLAQSETV GHEAADMAAQ ALGLSRRQVY VLIRRARQGS GLVTDLVPGQ SGGGKGKGRL PEPVERVIHE
LLQKRFLTKQ KRSLAAFHRE VTQVCKAQKL RVPARNTVAL RIASLDPRKV IRRREGQDAA RDLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDDRDRQPI
GRPYLTLAID VFTRCVLGMV VTLEAPSAVS VGLCLVHVAC DKRPWLEGLN VEMDWQMSGK PLLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WAEAVARVGV PAVVTRATSF LVDFLPILRR
TLTRTGFVID HIHYYADALK PWIARRERWP SFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALAKLR QQGREQVDES ALFRMIGQMR
EIVTSAQKAT RKARRDADRR QHLKTSARPD KPVPPDTDIA DPQADNLPPA KPFDQIEEW
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniB |
TniB |
TnXorYNA12 |
909 |
1824-2732 |
+ |
| Class: | Accessory Gene |
| Sequence Family: | ATP binding protein? |
| Comment: | identical to tniB (Tn1721)| similar function to Tn7 tnsC and MuB |
Protein Sequence:
|
MDEYPIIDLS HLLPAAQGLA RLPADERIQR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLVGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSPIAT LDMARYLLTR SEGTIGELAH LLMAAAIVAV ESGEEAINHR TLSMAVYTGP SERRRQFERE
LM
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniQ |
TniQ |
TnXorYNA12 |
1218 |
2729-3946 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Target Site Selection |
| Comment: | identical to tniQ (Tn1721)|similar function to Tn7 tnsD? |
Protein Sequence:
|
MKPAPRWPLH PAPKEGEALS SWLNRVALCY HMEEPDLLEH DLGHGQVDDL DTAPPLSLLA LLSQRSGIEL DRLRCMSFAG WVPWLLDSLD DQIPDALETY
AFQLSVLLPR LRRKTRSITS WRAWLPSQPI NRACPLCLSD PENQAVLLAW KLPLMLSCPL HGCWLESYWG VPGRFLGWEN ADAEPRTASD AIAAMDQRTW
QALTTGHVEL PRRRIHAGLW FRLLRTLLDE LNTPLSACGT CAGYPRQVWE GCGHPLRAGQ SLWRPYETLN PIVRLQMLEA AATAISLIEV RDISPPGEQA
KLFWSEPQTG FTSGLPTKAP KPEPINHWQR AVQAIDEAII EARHNPETAR SLFALASYGR RDPASLERLR ATFVKEGIPP EFLSHYLPDA PFACLKQNDG
LSDKF
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniR |
TniR |
TnXorYNA12 |
624 |
4008-4631 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
| Comment: | resolution of cointegrates || Protein: ACE81792.1 || identical to tniR (Tn1721) |
Protein Sequence:
|
MLIGYMRVSK ADGSQSTNLQ RDALIAAGVS LAHLYEDLAS GRRDDRPGLA ACLKALREGD TLIVWKLDRL GRDLRHLINT VHDLTARSVG LKVLTGHGAA
VDTTTAAGKL VFGIFAALAE FERELISERT VAGLISARAR GRKGGRPFKM TAAKLRLAMA SMGQPETKVG DLCEELGITR QTLYRHVSPK GELRPDGVKL
LSLGSAA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| aadA (ARO:3002601) |
AadA |
TnXorYNA12 |
792 |
4789-5580 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Transpoase Chemistry: | aminoglycoside nucleotidyltransferase |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | ANT(3'') (ARO:3004275) |
| Comment: | perfect match to reference sequence for ARO:3002601||Synonyms: aadA1-pm, aadA, aadA1, aad(3'')(9) |
Protein Sequence:
|
MREAMIAEVS TQLSEVVGVI ERHLEPTLLA VHLYGSAVDG GLKPHSDIDL LVTVTVRLDE TTRRALINDL LETSASPGGS EILRAVEVTI VVHDDIIPWR
YPAKRELQFG EWQRNDILAG IFEPATIDID LAILLTKARE HSVALVGPAA EELFDPVPEQ DLFEALNETL TLWNSPPDWA GDERNVVLTL SRIWYSAVTG
KIAPKDVAAD WAMERLPAQY QPVILEARQA YLGQEEDRLA SRADQLEEFV HYVKGEITKV VGK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| arr-3 (ARO:3002848) |
Arr-3 |
TnXorYNA12 |
492 |
5704-6195 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | rifamycin antibiotic (ARO:3000157) |
| Sequence Family: | rifampin ADP-ribosyltransferase (Arr) (ARO:3000390) |
| Comment: | perfect match to reference sequence for ARO:3002848 from Escherichia coli||Synonyms: arr-6 |
Protein Sequence:
|
MLCSQIPTIK GLKMVKDWIP ISHDNYKQVQ GPFYHGTKAN LAIGDLLTTG FISHFEDGRI LKHIYFSALM EPAVWGAELA MSLSGLEGRG YIYIVEPTGP
FEDDPNLTNK RFPGNPTQSY RTCEPLRIVG VVEDWEGHPV ELIRGMLDSL EDLKRRGLHV IED
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| AAC(6')-IIa (ARO:3002594) |
AAC(6')-IIa |
TnXorYNA12 |
555 |
6241-6795 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | AAC(6') (ARO:3000345) |
| Comment: | perfect match to reference sequence for ARO:3002594 from Salmonella enterica (Bitscore: 379)||Synonyms: |
Protein Sequence:
|
MSASTPPITL RLMTERDLPM LHDWLNRPHI VEWWGGDEER PTLDEVLEHY LPRAMAEESV TPYIAMLGEE PIGYAQSYVA LGSGDGWWED ETDPGVRGID
QSLADPTQLN KGLGTRLVRA LVELLFSDPT VTKIQTDPTP NNHRAIRCYE KAGFVREKII TTPDGPAVYM VQTRQAFERK RGVA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| intI1 |
IntI1 |
TnXorYNA |
582 |
6839-7420 |
+ |
| Class: | Integron Integrase |
| Sub Class: | Class 1 |
| Transpoase Chemistry: | Tyrosine |
| Sequence Family: | Class 1 Integron Tyrosine Integrase |
Protein Sequence:
|
MRISEGLQLR VKDLDFDHGT IIVREGKGSK DRALMLPESL APSLREQLSR ARAWWLKDQA EGRSGVALPD ALERKYPRAG HSWPWFWVFA QHTHSTDPRS
GVVRRHHMYD QTFQRAFKRA VEQAGITKPA TPHTLRHSFA TALLRSGYDI RTVQDLLGHS DVSTTMIYTH VLKVGGAGVR SPLDALPPLT SER
|
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| repeat t1 |
TnXorYNA12 |
9-27 |
TCAGAAGACG ACTGCACCA |
| repeat t2 |
TnXorYNA12 |
49-67 |
AACACGTCGG TCGAGGACT |
| repeat t3 |
TnXorYNA12 |
78-97 |
TCAGAAGTGA TCTGCACCAA |
| repeat t4 |
TnXorYNA12 |
110-128 |
TCAATACTCG TGTGCACCA |
| repeat i4 |
TnXorYNA12 |
7503-7521 |
AGGAGGGACG CAGGCGACT |
| repeat i3 |
TnXorYNA12 |
7531-7549 |
CGTCGGGCAG CAACGGACT |
| repeat i2 |
TnXorYNA12 |
7573-7591 |
ATCACGTCAG CCGAAGACT |
| IRi |
TnXorYNA12 |
7590-7622 |
CTGCAAGTCA CGTCGGCAGA AGACTTTTAC TGT |
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| References |
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Xu Y, Luo QQ, Zhou MG. Identification and characterization of integron-mediated antibiotic resistance in the phytopathogen Xanthomonas oryzae pv. oryzae. PLoS One. 2013;8(2):e55962. doi: 10.1371/journal.pone.0055962. Epub 2013 Feb 21. PubMed ID: 23437082
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