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Transposon
Name: TnSsu5       (Synonyms: Tn7232)
Family: Compound Transposon        Group: ISSsu5
Evidence of Transposition: no
 Host     

Host Organism:Staphylococcus aureus LAR2682 Molecular Source:chromosome
Place of Origin:Thessaly, Greece Date of Isolation:2018
Other Geographic Information:General University Hospital of Larissa

 Map     



 Terminal Inverted Repeats (IR)     

IRL (Length: 29 bp)CCCTGAATAATTCATACTTTTTAATTGAA
IRR (Length: 29 bp)CCCTGAATAATTCATAGCTCTAAATTTAA

 Sequence     
DNA SequenceLength  11113 
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
CCCTGAATAA TTCATACTTT TTAATTGAAA CCGTCTGAAA CTGCCTAACG GCAGTCTGAT AATTACTTTT TTAGTTTCAC CCCTTAAGTG ATGAAAAAAG 100
AACCCCATTC TGCTATGGTA AAGGTGACGA AACCAACCAT AAGAAAGGAG TTCTTCTCAT GACTAGCTTA CACAAAAATC AAGTTAAATT CAATTCAAAT 200
ATCACTATTT CACATACCGG TGGTCGTCTA TCAAGTGATT CGGGGTTAGT CCTGGTTAAA GAATTAATGA ATACCTTCGG CTTTTCGCAC TTAGCTAAAC 300
AATGGCTCCA TATTACAGAT CATCGGGCTT ATTTTACCCA TGATAACTTA GCGATATTGG AACAGCTTAT TATGCAATTA ATTGCTGGTT ACTCGGCAGA 400
CTCATCAGCT AATCTATTAA GACGGGATCC TGTCTTTCAA GCTGTACTCG GTAAAAAACA GTTGGCATCA CAATCCTCAA TCTCACGGTT TCTGGATCGT 500
TTCACCGAGG AGAACATCGA TCAACTCCAA GCATTAAATC AGTCATTGAT TGATAAAGCA CGTTTAATTC GCAATGACAC CGAGTTAATC ATTGATGTCG 600
ATTCCACACA TTCGGATACC TTTGGACGCC AAGAACAAAC AGATTATAAT GCCCATTATC AAACCTACGG CTATCACCCA TTAGTTGCCT TTGATGGACT 700
GACCGGAGAT TTCTTAAAAG CTGAACTGCG TTCAGGCAAT CAGTACACAT CTAAAGGTGT AAAAGCCTTT ATCAACCCGC TTTTACACCA CTACAAGAGC 800
ACGTTACCTC ATACCGAGAT ATTGGTTCGG GGTGACAGCG GCTTCGCCAC ACCAGAGGTG TATGAGTCTT GTGAAGCAAC TGAAAGCCAG TACGTTATCC 900
GATTAAAGAG CAATCGGAGG TTAAGTCAGT TAGCTGAACA TTCTGTTCTT TACGGGGACA ATCAAGAATG GGAAGAGCGA GAAGTGCAGT ATTTTTCACT 1000
ACCTTATCAA GCACAATCCT GGTCGAAACC TCGTCGTGTC TGTATACGCT CCGTCCGTGA AGGAGGAGAA TTGCTATTTC ATCATGCGTT TATTGTGACT 1100
AATCTATCCG ACAATGTCTC GCCTGAAGTC ATATTTTCTC TTTACGGCAA GCGAGGAACA ATGGAAAATT TCATCAAAGA AGCGAAAGGT GGCTTTTACT 1200
TCGATAAAAC AGATAGCCCG CGTTTCTTAG AAAATCATGT CAGAATGATG ATCAGTGTCC TTGCATACAA CCTCGTTAAT TTTTTAAAAA GCATTGGTTT 1300
TGATAAAGTG AACCAGGGCA TGACGATTCA TTCCATCCGG CTGATATTGC TTAAAGTAGC CGGTAAACTT GTTCAGACTG GGAGACAGGT CTATCTCAAA 1400
CTGTCAAGTT ATCATGTGTA TCAAACTGAA TTTTATAAGG TTTTTGAACG CCTGCGGCGA TCCAAACAAT GGATTTAGAC TAGTTATCAC ACAAATTTTT 1500
TAACCGATTC TTTTTCAAGG GATTCGTCTG CCCTTAAATA GACAAATAAT TTTTATTATG ATCTTCTTCC GTAGGCATCC TGTTCGAAAA CACATTATTT 1600
TGGAAGAAAG TATCTGCCTA ATTTAAAAAT TGGCAATTTG TTCAAAAAAA CAGGTTAAAT TTAGAGCTAT GAATTATTCA GGGATGATAT AATAAAACGA 1700
CTTGGAGGTG GAAGAATGTA TAACTTTTCT TGCTAATTAT ATGATGCATA ATAAGATATT TAAAGAAACG GCTATAGAAC CGTTTGTTTT GTTATGCAAA 1800
TTGCAAGAAA GTTAAGTATT CTACACTCAA TAATACATTA CAGTAACCTT ATGTTATGTA TAACAAAAGG TAATAATAGT ATTTGTTTTT GAGCCGTAAG 1900
AATTTACTTT CTTGCGGCTT TTAATATTTG TAAAAGAAAG GAAGATAAAC GTGATAGACA ATGATACTAT GTCATTCATG ACAAAATCCT TGCAGAGTTG 2000
GATAACATTA TAGAGTAATT AATGCCGAAA ACCGACTTTG CTTATAAAAT TTTTATAATG TAAAGGAGGA AGAAATATAT GTCCTTAATA AATGTTTCAA 2100
ATCTAACTTT TTCATATGAA GGAAGTTATG ACAATATTTT TGAAAATGTA AGTTTTCAGA TAGATACAGA TTGGAAACTC GGTTTTATTG GAAGAAACGG 2200
ACGCGGTAAA ACTACTTTCT TAAATTTACT GCTTGGCAAA TATGCGTATT CCGGCAATAT AAGTTCTACA GTTAAGTTTG AGTATTTTCC TTATGATGTG 2300
GAAGATAAGA GTCTATATAC AATTGAAGTA ATGAAGAGTA TTTGTACGGA ATTTATGGAT TGGGAGATTT TTCGTGAAAT ATCATTGCTT GATGTTCAAG 2400
AAGATGCTTT ATATCGTCCG TTTAATACAT TGTCAAATGG TGAGCAAACG AAGGTCCTTC TTGCAGCTTT ATTCCTTACA GCGAGTTGTT TCCTGCTTAT 2500
TGATGAACCT ACAAACCATC TTGACATCGA TGCACGTAAT GTAGTGCAAA ACTATTTGAA ACGCAAGAAG GGGTTTATTT TGGTATCTCA TGATAGAAGC 2600
TTACTTGATC AATGTGTTGA CCATATACTA TCTATCAATA AAACGAATAT CGAAATCCAA AAGGGAAATT TTACTTCTTG GTGGGAGAAC AAAACGTTAC 2700
AAGATAATTT TGAACTGGCA GAAAACAAGA AACTCCTTAA AGAAATAGGA AGGTTGTCTT ATGCAGCAAA ACGTAGTTCA AACTGGTCAA ATAAAGTAGA 2800
AAAAAGTAAA TATGGAACAA CAAATTCTGG TTCAAAACTG GATAAGGGTT ATGTTGGACA TAAGGCTGCA AAAGCGATGA AACGTGCCAA AAATATTGAG 2900
TCAAGACATC AGGAAGCCGT TTTACAAAAA TCAGAACTGC TCCACAACAT TGAACAATAT GATGACTTAA AAATTTCACC ACTTGAATTT CACAAAGAGT 3000
GCTTAATAGA AGCGAATGAT TTATCATTGT CTTATGGAGA TAAAGAAGTA TGCAGTAATC TTAATTTCAG AGTCAATATT GGTGATAGAG TTGCCATTAT 3100
CGGAAAAAAT GGGAGTGGTA AGTCTAGTAT CCTAAAATTG ATTAATGGAG ATGATATTAA ATTTACCGGA AATTTTATGC TAGCAAGTGG ACTAAAAATT 3200
TCTTATATTT CGCAAGATAC TTCATATTTA AAAGGTAATC TATCTGAATT TGCCTATAAT AATAAGATCG ATGAAACTCT ATTTAAAACG ATTCTTCGTA 3300
AACTGGATTT TAATAGAGAG CAGTTTGATA AGAACATGGT GGATTTTAGT GCTGGTCAGA AAAAGAAAGT ACTAATTGCT AAAAGCCTTT GTGAAAGTGC 3400
ACATTTGTAT ATATGGGATG AGCCATTGAA CTATATTGAT ATTTTTTCAC GTATCCAAAT TGAAAAAATG ATTTTGGAAT ATTGTCCTAC ACTATTGTTT 3500
GTGGAGCATG ATGATGCTTT TTGCAATAAC ATTTGTACGA AAAATATTAA TTTAGGTTTG TAGAGATTTT GAGTTGCCAC AATAACTAAA AGATATTTAC 3600
ATGAAAGGGT GAAGAAATGT TAAAACAAAA AGAATTAATT GCAAACGTTA AGAATCTTAC TGAGTCAGAT GAACGAATTA CAGCTTGTAT GATGTATGGA 3700
TCGTTTACCA AAGGAGAAGG TGACCAATAC TCTGATATAG AGTTCTATAT ATTTTTGAAA GATAGTATAA CCTCGAACTT TGATTCATCC AACTGGTTGT 3800
TTGACGTAGC TCCGTACTTG ATGCTTTATA AAAATGAGTA CGGAACAGAG GTAGTTATTT TTGATAATCT TATACGTGGG GAATTTCATT TCCTTTCTGA 3900
AAAAGATATG AACATAATCC CCTCGTTTAA AGATTCAGGT TATATTCCTG ATACGAAGGC TATGCTTATT TACGATGAAA CAGGGCAATT AGAAAATTAT 4000
TTATCAGAGA TAAGTGGTGC AAGACCAAAT AGACTTACTG AAGAAAATGC TAATTTTTTG TTGTGTAATT TCTCTAATCT ATGGTTGATG GGAATCAACG 4100
TTCTAAAAAG AGGAGAATAT GCTCGTTCAT TAGAACTCTT ATCACAACTT CAAAAAAATA CACTACAACT TATACGTATG GCAGAAAAAA ATGCTGATAA 4200
TTGGCTAAAC ATGAGTAAAA ACCTTGAAAA AGAAATTAGC CTTGAAAATT ATAAAAAATT TGCAAAGACC ACTGCTCGAT TAGATAAGGT AGAATTATTT 4300
GAAGCCTATA AAAATTCTTT GCTATTAGTT ATGGATTTGC AAAGTCACCT TATTGAACAA TACAACTTAA AAGTTACACA TGACATTTTA GAAAGATTGT 4400
TGAATTACAT TAGTGAATAG GAGAGTAACG TTATTCACAG TATTGGGTAC TGAAAATTAA CAGCATACCT CAGTTTTTCA AAAAACAGCG AAGCCTATGG 4500
ATATGTTCCC GTCTACCGAT AGTGCAAAAA GTGTCGTGGA TATGTTTCCG AGAACGGACA TACACAAATG ACATTCATTC TGTCCTCTCA ATCCATGTGG 4600
AAGCAGTATG TCTGTTAACA AGAAAATAAT TATTGTTCGT CCTGACGAGT TGTTAGACTC GAAAAGGATA AACATCATTT TTAGAACCGG TAGCCGATTT 4700
TTGGCTAGCG GTTTTTTGGG CTCTTTGGCA AATAGTGGTG ATTGAATCTC GCGCTATCCT ATGGAAAACC GCCTTGTGTG AGGGGCTGCG AGACCGCTTC 4800
GATCCTAGAA TTGCTGAAGC ACGAATCTAG CGTCACTCAC ATTTCATCTT TTGACGTAGC TGAGACAAGG TGTTTTTCTT CGATCCGCTA GTGGTTAATC 4900
TCTTTTTGGT GCAAATATGG TTTAGAATTT CTTTGCATGG CTTAAGGGAG TGGAGAATCG GATATTAGTA GGATTTACAT CCACAGATAA AAATAGGCTT 5000
GATTTTAACA GCGAAACTAA AATACCCTAC TTAAATGAAG TGATAGATTA GATGTTGGGT TGTTAGGAGA TGCTTAAAAA TCCTATGCAA TCAATAGTTT 5100
TTAGTGTTTG TTGACTTGAT CCCTAAATCG CCTGAGTACT AAACGTTGAG TGTGTCTGCT TACTGTCACT AGCCAGTAAG TGAGACTGTA GTTAATCTCT 5200
CATTTTCCCC AGTATTATGT TGAAAATAGC CATGAAGCGA TTATTTCTAA AGAGTTATTT TTGCAGGCTC AAGAAGAAAT TTATCGGAGA AGTAATATCT 5300
ACACAGGAGA AGGCAAGAAC AAAAGAATTT ATAGTAGCAA GTACGCTTTA AGTGCCATCA CCTTCTGTGG ATATTGTGGC GATATTTATA GGAGAACCTA 5400
TTGGAATATT CATGGCAGAA AAGAATTTGT CTGGCGATGC GTGACTAGAA TCGAGCAGGG TCCCGAGGTA TGTAAGAACC GAACCGTAAA AGAAGATGAA 5500
CTCTATGGTG CGGTAATGAC CGCAATTAAT AAGCTACTTG CTGGTGGCAA CAATATGATA AAGACACTGG AAGAAAATAT TCATGCTGTG ATTGGAGAAA 5600
CCACAGAATA CCAAATTTCA GAGATTAATA CCCTACTAGA TGAAAAACAA AAAGAACTAA TCAAGCTGGC CAATAAAGGT CAAGATTATG AATACCTGGT 5700
AGATGAGATC GATGAGATGC GAGATAAGCG TCAGACTCTT TTAGTAGAAG ATGCCTCCCT CAGTGGCGAG AACGAGCGCA TCAATGAGTT GATTGAATTT 5800
ATCCGCAAGA ACAAATTCCG CACCTTAGAA TATGATGATA AGCTTGTAAG GAAGATAATC CAGAACGTTA AGGTCTATGA AGACCACTTC GTCATAGCCT 5900
TCAAACCAGG TATCGAAATG GAAATATGAA AACCAGAAGT AAATAGCCCA TGACTCTGAA GTAGAGTTGT GGGTTTTCTT TTAATTGCTG ATTATAATAA 6000
TATTTTAATG ACTATTGCAT TTATCAACCA AATGGTTTAT GTTATTCTTA GCATAAACTT GGAGGTGCTG TATGACTACG GCAGAAATGA TTAAAGAACT 6100
GTGTGAGCAA ATGAATATAA GTGTTTCCGA ACTTGCTAGA CGTATTGGCC AGACTCCACA GAATTTTAAT AAAAAATTAC AACGAGAAAC AGTAACCTTG 6200
GATGAGTTGA AGGCCATTGC TGATGTGCTA GGTGTCAAGT TTGTGCAGGC ATTTATTTTA CCAGATGGAG ATGAAATAAA AATATCTAAC GAATAAAGGA 6300
GGATGTTTAT ATGGTAGGTA ATGTTATTCA AATAGTAACA GAGAAATTAT CATCTTTGCC TTTTATAGAA GGCATTGTAT TAGGGGGCTC ACGTGCAAGA 6400
AGCACCCATA CAGAAAATTC TGATATAGAT ATCGGAATCT ATTACAATTC AGACTCATTT GACCTGACAG CGATTAATCA AATTGCTACA GAGTTGGATG 6500
ATGAGAATAG AAACAACCTT GTTGTACCTC CCGGAGCGTG GGGTGATTGG GTTAATGGCG GTGGATGGTT AGTTATAAAC GGGTGTCATG TTGACTTGAT 6600
ATTACGTGAT ATAAAACGGG TGGAACAAAT AATCAAAGAT ACGGAGCAAG GAATTGTTAC TGCCAATTAT CAGACCGGGC ATCCCCATGG TTATATAAGT 6700
GCTATGTATC GTGGAGAATT AGCGATTAGT AAAATACTAT ATGCTAAGAA CGAAAGCTTA TGCGAATTAA AAAAGCAGGC AGAAATTTAC CCTACTGCTC 6800
TAAAGAAAAG CTTGATGAAC TTTTTTATAT TTGAAGCTGA ATTCTCTTTA ATGTTTGTAA AAGCAAATGC GGGGGCAGAG GATAAATATT ATATTGCAGG 6900
CCATGTTTTT CGTATTATTT CATGCTTAAA TCAAGTACTA TTTGCATGTA ATAATGCTTA TTGCATTAAC GAAAAGAAAG CTATAAAACT GCTTGAAACT 7000
TTTGAATATA AACCTGAAAA ATATGCCGAA AGAGTTAATC ATATTTTTGA AGTACTCGGT CTTTCTCTTT TTGAATGCTA CGACATGACC GAGAAACTTT 7100
ATAAAGAAGT GAATGAAATT GTATCGGAGA TAAATAACTT TTTAAACGAG GAGAGTTCAG ATGAAAGAAA ACAAATATGA TGATAATATA TTTTTTCAAA 7200
AATACAGTCA AATGAGTCGC TCGCAGAAAG GACTGGCTGG TGCGGGAGAA TGGGAGACTT TGAAAAAGAT GCTACCTGAT TTTAAGGGTA AGCGTGTGCT 7300
TGATTTAGGA TGCGGCTATG GATGGCACTG TATATATGCG ATGGAAAACG GTGCTTCCTC TGTAGTAGGT GTTGATATTT CTCATAAAAT GCTCGAAGTA 7400
GCAAAAGGAA AAACCCATTT TCCACAGATT GAATATGAAT GCTGTGCCAT AGAAGATGTG GATTTCCCAG AGGAGAGCTT TGATGTAATA CTAAGTTCGC 7500
TTGCGTTTCA TTATGTAGCA GACTATGAGA ATTTAATAAA AAAGATATAT AGGATGCTGA AGGCTGGTGG CAATTTAGTT TTTACAGTTG AACATCCTGT 7600
TTTTACTGCT CATGGAACAC AAGACTGGTA TTATAACGAA AAAGGAGAAA TACTGCATTT CCCGGTGGAC AATTATTATT ATGAGGGCAA ACGGACAGCT 7700
ATGTTTTTGG AAGAAAAGGT TACAAAATAT CATAGAACAC TGACCACATA TCTAAATACA CTGCTTTCAA ATAGTTTTAT AATAAATCAG ATTGTGGAGC 7800
CACAGCCGCC AGAGAACATG ATGGATATTC CGGGGATGGC GGATGAAATG CGACGCCCAA TGATGCTGAT TGTATCGGCA AAAAAGAAGA TGTAATAATA 7900
TAGAAAAAAT AAACGAGGAG TATGTAATGA GATCAGAAAA AGAAATGATG GATTTAGTAC TTTCTTTAGC AGAACAGGAT GAACGTATTC GAATTGTGAC 8000
CCTTGAGGGG TCACGCGCAA ATATTAATAT ACCTAAAGAT GAATTTCAGG ATTATGATAT TACATATTTT GTAAGTGATA TAGAACCGTT TATATCTAAT 8100
GATGACTGGC TTAATCAATT TGGGAATATA ATAATGATGC AAAAGCCGGA GGATATGGAA TTATTCCCAC CTGAAGAAAA GGGATTTTCC TATCTTATGC 8200
TATTTGATGA TTACAATAAA ATTGATCTTA CCTTATTGCC CTTGGAAGAG TTAGATAATT ACCTAAAGGG CGATAAATTA ATAAAGGTTC TAATTGATAA 8300
AGATTGTAGA ATTAAAAGGG ACATAGTTCC GACTGATATA GATTATCATG TAAGAAAGCC AAGCGCAAGG GAGTATGATG ATTGCTGCAA TGAATTTTGG 8400
AATGTAACAC CTTATGTTAT TAAAGGATTG TGCCGCAAAG AGATACTGTT TGCAATCGAT CATCTGAACC AGATTCTACG GTTTGAACTA CTTAGGATGA 8500
TGTCGTGGAA GGTTGGGATA AAGACAGAAT TTTCATTAAG TGTTGGGAAA AATTATAAGT ATATTAACAA ATACATTGAT GAAGATCTAT GGAATAGATT 8600
ATTATCTACA TATCGCATGG ATTCCTATGA AAATATTTGG AAGTCATTAT TTATATGCCA CCAATTGTTC AGGGAAGTGT CCAAAGAGGT AGCAGAACTA 8700
CTGGGGTTTG ATTATCCAGA GTATGGTAAG AACATAACAA GATATACCGA GGACATGTAT AAAAAATATG TTGAAAATGA CTATTTTTAA AGATTAGCAA 8800
AGATTATTAA CCATAAGCAA GGGGTGTAAA TGTATGGAAA GTACTGATGT TATAAATGAA ATTAGAGGTA TATTACCTCG TAACTCAATT GGAAAATATG 8900
ATTTACTAAC TATTTTTACA CATAAAACCG TTTTTGATAA AATTGTAAAA GTACTATCAT TGGATTTTCA AAATAAAGTA GATTATGTGG CTGCCCCAGA 9000
AGCAATTGGA TGGATACTAG GCACTGCCAT AGCCAAAGAA CTTGGAGTGG GGTTTATTGG AGTAAGAAAA GGTGATAAGC TGCCATACGC AAAAGAAGAG 9100
ATTATTTCGA CACATTTTAC CGACTATTCA GGTCAAGATA AAAGCTTTGA AATATCTAAG AGTTCTATTG TGAGGAACAA AAGAGTTTTG ATTGTAGATG 9200
ATTGGATAGA GACAGGTTCT CAAATGAAGG CTTTAATAGC TTTGTTAGAG AAATTGGATT GCAGCATTAT TGGGTTGGCT ACTATTGGGA TTGATATAAA 9300
TGAGGTTACT CAAAAATGGA TAGACAGCAG TTTTGTAGCT TATATTGGCT CAAACATATA ATAAACCGAA AGAAAATCTT GAATCAAAAT TTTGGATGGC 9400
GTTAATTTAC AATACAACGA AAGATGTTTA CCCTGAATAA TTCATACTTT TTAATTGAAA CCGTCTGAAA CTGCCTAACG GCAGTCTGAT AATTACTTTT 9500
TTAGTTTCAC CCCTTAAGTG ATGAAAAAAG AACCCCATTC TGCTATGGTA AAGGTGACGA AACCAACCAT AAGAAAGGAG TTCTTCTCAT GACTAGCTTA 9600
CACAAAAATC AAGTTAAATT CAATTCAAAT ATCACTATTT CACATACCGG TGGTCGTCTA TCAAGTGATT CGGGGTTAGT CCTGGTTAAA GAATTAATGA 9700
ATACCTTCGG CTTTTCGCAC TTAGCTAAAC AATGGCTCCA TATTACAGAT CATCGGGCTT ATTTTACCCA TGATAACTTA GCGATATTGG AACAGCTTAT 9800
TATGCAATTA ATTGCTGGTT ACTCGGCAGA CTCATCAGCT AATCTATTAA GACGGGATCC TGTCTTTCAA GCTGTACTCG GTAAAAAACA GTTGGCATCA 9900
CAATCCTCAA TCTCACGGTT TCTGGATCGT TTCACCGAGG AGAACATCGA TCAACTCCAA GCATTAAATC AGTCATTGAT TGATAAAGCA CGTTTAATTC 10000
GCAATGACAC CGAGTTAATC ATTGATGTCG ATTCCACACA TTCGGATACC TTTGGACGCC AAGAACAAAC AGATTATAAT GCCCATTATC AAACCTACGG 10100
CTATCACCCA TTAGTTGCCT TTGATGGACT GACCGGAGAT TTCTTAAAAG CTGAACTGCG TTCAGGCAAT CAGTACACAT CTAAAGGTGT AAAAGCCTTT 10200
ATCAACCCGC TTTTACACCA CTACAAGAGC ACGTTACCTC ATACCGAGAT ATTGGTTCGG GGTGACAGCG GCTTCGCCAC ACCAGAGGTG TATGAGTCTT 10300
GTGAAGCAAC TGAAAGCCAG TACGTTATCC GATTAAAGAG CAATCGGAGG TTAAGTCAGT TAGCTGAACA TTCTGTTCTT TACGGGGACA ATCAAGAATG 10400
GGAAGAGCGA GAAGTGCAGT ATTTTTCACT ACCTTATCAA GCACAATCCT GGTCGAAACC TCGTCGTGTC TGTATACGCT CCGTCCGTGA AGGAGGAGAA 10500
TTGCTATTTC ATCATGCGTT TATTGTGACT AATCTATCCG ACAATGTCTC GCCTGAAGTC ATATTTTCTC TTTACGGCAA GCGAGGAACA ATGGAAAATT 10600
TCATCAAAGA AGCGAAAGGT GGCTTTTACT TCGATAAAAC AGATAGCCCG CGTTTCTTAG AAAATCATGT CAGAATGATG ATCAGTGTCC TTGCATACAA 10700
CCTCGTTAAT TTTTTAAAAA GCATTGGTTT TGATAAAGTG AACCAGGGCA TGACGATTCA TTCCATCCGG CTGATATTGC TTAAAGTAGC CGGTAAACTT 10800
GTTCAGACTG GGAGACAGGT CTATCTCAAA CTGTCAAGTT ATCATGTGTA TCAAACTGAA TTTTATAAGG TTTTTGAACG CCTGCGGCGA TCCAAACAAT 10900
GGATTTAGAC TAGTTATCAC ACAAATTTTT TAACCGATTC TTTTTCAAGG GATTCGTCTG CCCTTAAATA GACAAATAAT TTTTATTATG ATCTTCTTCC 11000
GTAGGCATCC TGTTCGAAAA CACATTATTT TGGAAGAAAG TATCTGCCTA ATTTAAAAAT TGGCAATTTG TTCAAAAAAA CAGGTTAAAT TTAGAGCTAT 11100
GAATTATTCA GGG

 ORFs     
ORF Summary
Gene Name Associated TE Coordinates Class Sub Class Orientation
tnp ISSsu5 159-1478 Transposase   +
lsaB (ARO:3003111) TnSsu5 2079-3563 Passenger Gene Antibiotic Resistance +
lnuB (ARO:3002836) TnSsu5 3617-4420 Passenger Gene Antibiotic Resistance +
recombinase TnSsu5 5261-5929 Passenger Gene Other +
HTH transcriptional regulator TnSsu5 6072-6296 Passenger Gene Other +
nucleotidyltransferase TnSsu5 6311-7180 Passenger Gene Other +
methyltransferase TnSsu5 7161-7895 Passenger Gene Other +
ANT(6)-Ia (ARO:3002626) TnSsu5 7927-8790 Passenger Gene Antibiotic Resistance +
adenine phosphoribosyltransferase TnSsu5 8834-9361 Passenger Gene Other +
tnp ISSsu5 9589-10908 Transposase   +

ORF Details
Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnp Tnp ISSsu5 1320 159-1478 +
Class:   Transposase
Transpoase Chemistry:   DDE
Protein Sequence:  
 MTSLHKNQVK FNSNITISHT GGRLSSDSGL VLVKELMNTF GFSHLAKQWL HITDHRAYFT HDNLAILEQL IMQLIAGYSA DSSANLLRRD PVFQAVLGKK
QLASQSSISR FLDRFTEENI DQLQALNQSL IDKARLIRND TELIIDVDST HSDTFGRQEQ TDYNAHYQTY GYHPLVAFDG LTGDFLKAEL RSGNQYTSKG
VKAFINPLLH HYKSTLPHTE ILVRGDSGFA TPEVYESCEA TESQYVIRLK SNRRLSQLAE HSVLYGDNQE WEEREVQYFS LPYQAQSWSK PRRVCIRSVR
EGGELLFHHA FIVTNLSDNV SPEVIFSLYG KRGTMENFIK EAKGGFYFDK TDSPRFLENH VRMMISVLAY NLVNFLKSIG FDKVNQGMTI HSIRLILLKV
AGKLVQTGRQ VYLKLSSYHV YQTEFYKVFE RLRRSKQWI

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
lsaB (ARO:3003111) LsaB TnSsu5 1485 2079-3563 +
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target protection (ARO:0001003)
Target:   lincosamide antibiotic (ARO:0000017)||pleuromutilin antibiotic (ARO:3000670)||streptogramin antibiotic (ARO:0000026)
Sequence Family:  lsa-type ABC-F protein (ARO:3004472)
Comment:   loose match to reference sequence for ARO:3003111 (bitscore: 625)||confers pristinamycin, virginiamycin, quinupristin, and dalfopristin resistance
Protein Sequence:  
 MSLINVSNLT FSYEGSYDNI FENVSFQIDT DWKLGFIGRN GRGKTTFLNL LLGKYAYSGN ISSTVKFEYF PYDVEDKSLY TIEVMKSICT EFMDWEIFRE
ISLLDVQEDA LYRPFNTLSN GEQTKVLLAA LFLTASCFLL IDEPTNHLDI DARNVVQNYL KRKKGFILVS HDRSLLDQCV DHILSINKTN IEIQKGNFTS
WWENKTLQDN FELAENKKLL KEIGRLSYAA KRSSNWSNKV EKSKYGTTNS GSKLDKGYVG HKAAKAMKRA KNIESRHQEA VLQKSELLHN IEQYDDLKIS
PLEFHKECLI EANDLSLSYG DKEVCSNLNF RVNIGDRVAI IGKNGSGKSS ILKLINGDDI KFTGNFMLAS GLKISYISQD TSYLKGNLSE FAYNNKIDET
LFKTILRKLD FNREQFDKNM VDFSAGQKKK VLIAKSLCES AHLYIWDEPL NYIDIFSRIQ IEKMILEYCP TLLFVEHDDA FCNNICTKNI NLGL

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
lnuB (ARO:3002836) LnuB TnSsu5 804 3617-4420 +
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Target:   lincosamide antibiotic (ARO:0000017)
Sequence Family:  lincosamide nucleotidyltransferase (LNU) (ARO:3000221)
Comment:   perfect match to reference sequence for ARO:3002836||Synonyms: linB
Protein Sequence:  
 MLKQKELIAN VKNLTESDER ITACMMYGSF TKGEGDQYSD IEFYIFLKDS ITSNFDSSNW LFDVAPYLML YKNEYGTEVV IFDNLIRGEF HFLSEKDMNI
IPSFKDSGYI PDTKAMLIYD ETGQLENYLS EISGARPNRL TEENANFLLC NFSNLWLMGI NVLKRGEYAR SLELLSQLQK NTLQLIRMAE KNADNWLNMS
KNLEKEISLE NYKKFAKTTA RLDKVELFEA YKNSLLLVMD LQSHLIEQYN LKVTHDILER LLNYISE

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
recombinase Recombinase TnSsu5 669 5261-5929 +
Class:   Passenger Gene
Sub Class:   Other
Sequence Family:  Zn_ribbon_recom (PF13408)
Protein Sequence:  
 MQAQEEIYRR SNIYTGEGKN KRIYSSKYAL SAITFCGYCG DIYRRTYWNI HGRKEFVWRC VTRIEQGPEV CKNRTVKEDE LYGAVMTAIN KLLAGGNNMI
KTLEENIHAV IGETTEYQIS EINTLLDEKQ KELIKLANKG QDYEYLVDEI DEMRDKRQTL LVEDASLSGE NERINELIEF IRKNKFRTLE YDDKLVRKII
QNVKVYEDHF VIAFKPGIEM EI

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
HTH transcriptional regulator HTH transcriptional regulator TnSsu5 225 6072-6296 +
Class:   Passenger Gene
Sub Class:   Other
Sequence Family:  HTH_26 (Pfam:PF13443)
Protein Sequence:  
 MTTAEMIKEL CEQMNISVSE LARRIGQTPQ NFNKKLQRET VTLDELKAIA DVLGVKFVQA FILPDGDEIK ISNE

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
nucleotidyltransferase Nucleotidyltransferase TnSsu5 870 6311-7180 +
Class:   Passenger Gene
Sub Class:   Other
Sequence Family:  NTP_transf_2 (PF01909)
Protein Sequence:  
 MVGNVIQIVT EKLSSLPFIE GIVLGGSRAR STHTENSDID IGIYYNSDSF DLTAINQIAT ELDDENRNNL VVPPGAWGDW VNGGGWLVIN GCHVDLILRD
IKRVEQIIKD TEQGIVTANY QTGHPHGYIS AMYRGELAIS KILYAKNESL CELKKQAEIY PTALKKSLMN FFIFEAEFSL MFVKANAGAE DKYYIAGHVF
RIISCLNQVL FACNNAYCIN EKKAIKLLET FEYKPEKYAE RVNHIFEVLG LSLFECYDMT EKLYKEVNEI VSEINNFLNE ESSDERKQI

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
methyltransferase Methyltransferase TnSsu5 735 7161-7895 +
Class:   Passenger Gene
Sub Class:   Other
Sequence Family:  Methyltransf_11 (PF08241)
Protein Sequence:  
 MKENKYDDNI FFQKYSQMSR SQKGLAGAGE WETLKKMLPD FKGKRVLDLG CGYGWHCIYA MENGASSVVG VDISHKMLEV AKGKTHFPQI EYECCAIEDV
DFPEESFDVI LSSLAFHYVA DYENLIKKIY RMLKAGGNLV FTVEHPVFTA HGTQDWYYNE KGEILHFPVD NYYYEGKRTA MFLEEKVTKY HRTLTTYLNT
LLSNSFIINQ IVEPQPPENM MDIPGMADEM RRPMMLIVSA KKKM

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
ANT(6)-Ia (ARO:3002626) ANT(6)-Ia TnSsu5 864 7927-8790 +
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  ANT(6) (ARO:3000225)
Comment:   perfect match to reference sequence for ARO:3002626||Synonyms: ant6, aadE
Protein Sequence:  
 MRSEKEMMDL VLSLAEQDER IRIVTLEGSR ANINIPKDEF QDYDITYFVS DIEPFISNDD WLNQFGNIIM MQKPEDMELF PPEEKGFSYL MLFDDYNKID
LTLLPLEELD NYLKGDKLIK VLIDKDCRIK RDIVPTDIDY HVRKPSAREY DDCCNEFWNV TPYVIKGLCR KEILFAIDHL NQILRFELLR MMSWKVGIKT
EFSLSVGKNY KYINKYIDED LWNRLLSTYR MDSYENIWKS LFICHQLFRE VSKEVAELLG FDYPEYGKNI TRYTEDMYKK YVENDYF

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
adenine phosphoribosyltransferase Adenine phosphoribosyltransferase TnSsu5 528 8834-9361 +
Class:   Passenger Gene
Sub Class:   Other
Sequence Family:  Pribosyltran (PF00156)
Protein Sequence:  
 MESTDVINEI RGILPRNSIG KYDLLTIFTH KTVFDKIVKV LSLDFQNKVD YVAAPEAIGW ILGTAIAKEL GVGFIGVRKG DKLPYAKEEI ISTHFTDYSG
QDKSFEISKS SIVRNKRVLI VDDWIETGSQ MKALIALLEK LDCSIIGLAT IGIDINEVTQ KWIDSSFVAY IGSNI

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnp Tnp ISSsu5 1320 9589-10908 +
Class:   Transposase
Transpoase Chemistry:   DDE
Protein Sequence:  
 MTSLHKNQVK FNSNITISHT GGRLSSDSGL VLVKELMNTF GFSHLAKQWL HITDHRAYFT HDNLAILEQL IMQLIAGYSA DSSANLLRRD PVFQAVLGKK
QLASQSSISR FLDRFTEENI DQLQALNQSL IDKARLIRND TELIIDVDST HSDTFGRQEQ TDYNAHYQTY GYHPLVAFDG LTGDFLKAEL RSGNQYTSKG
VKAFINPLLH HYKSTLPHTE ILVRGDSGFA TPEVYESCEA TESQYVIRLK SNRRLSQLAE HSVLYGDNQE WEEREVQYFS LPYQAQSWSK PRRVCIRSVR
EGGELLFHHA FIVTNLSDNV SPEVIFSLYG KRGTMENFIK EAKGGFYFDK TDSPRFLENH VRMMISVLAY NLVNFLKSIG FDKVNQGMTI HSIRLILLKV
AGKLVQTGRQ VYLKLSSYHV YQTEFYKVFE RLRRSKQWI

 Internal Transposable Elements (TE)     

TnCentral Accession TE Name Type Coordinates Length
ISSsu5-NC_009442 ISSsu5 Insertion Sequence 1-1683 1683
ISSsu5-NC_009442 ISSsu5 Insertion Sequence 9431-11113 1683

 Internal Repeat Elements     

Name Associated Mobile Element Coordinates Sequence (Top Strand)
IRR ISSsu5 1655-1683 AATTTAAATC TCGATACTTA ATAAGTCCC
IRL ISSsu5 9431-9459 CCCTGAATAA TTCATACTTT TTAATTGAA

 References     

1.Sarrou S, Liakopoulos A, Chasioti M, Foka A, Fthenakis G, Billinis C, Spyrou V, Pantelidi K, Roussaki-Schulze A, Lachanas V, Makaritsis K, Skoulakis C, Daikos GL, Dalekos G, Spiliopoulou I, Petinaki E. Dissemination of Methicillin-Susceptible CC398 Staphylococcus aureus strains in a rural Greek area. PLoS One. 2015 Apr 2;10(4):e0122761. doi: 10.1371/journal.pone.0122761. eCollection 2015. PubMed ID: 25835293
2.Sarrou S, Liakopoulos A, Tsoumani K, Sagri E, Mathiopoulos KD, Tzouvelekis LS, Miriagou V, Petinaki E. Characterization of a Novel lsa(E). Antimicrob Agents Chemother. 2015 Nov 23;60(2):1164-6. doi: 10.1128/AAC.01178-15. Print 2016 Feb. PubMed ID: 26596938