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References | |
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| Name: TnPa40.1 (Synonyms: Tn7174) |
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| Family: Tn3 Group: Tn21 |
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| Evidence of Transposition: yes |
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| Host |
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| Host Organism: | Pseudomonas aeruginosa PASGNDM699 | | |
| Place of Origin: | Singapore | Date of Isolation: | 2017 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| | |
| IRL (Length: 37 bp) |  | GGGGTGCCCGCAGAATTCGGAAAAAATCGTACGCTAA |
| IRR (Length: 37 bp) | | GGGGAGCCCGCAGAACTCGGAAAAAATCGTACGCTAA |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTGCCCG CAGAATTCGG AAAAAATCGT ACGCTAAGGT TTTCCGGGCA ATCGTAGCGG CCTGAACTTC CCAACCTCCA GCCTGCGGCT CTGCCGCCAG 100
ACGTAATCGC CAGTCAGGTT GATGTGCTCC CAGCCCAGCG GCAACAGGTA TTGCAGCAGC TCGCCGCCCA CCGACTTGCC TCGACCAGCC CCAAGTGATG 200
CGCTCCAGAT ACATCGTGTT CCATAGCACG ATGGCCGTCA CCAAGTTTGG GCTTCTGGCT CTGTAGCGCT GCGGCTCGAA GTTCCGATCC TGATTTTGCC 300
TAAAACTGGA CACTAGCTAT TGTCTTTGAA CAACGTCGAT ACGGTACGGG CAACATGGTC TGCACCGTCA CTGATTTCAC GCATAATAGT TGTTACAGTT 400
GCGATCTGAT CGTTGTTTTC TTCGGCGCTT CTAGCGATGC TGTTCATATC TATATTCAGT TGCTGAGTAA GCTTTCCGTT AGCAGTTACC ACATTCTGGA 500
TTTCCACGGT GGCACTGCTA GTTCGAGCTG CCAACTGACG AACCTCGTCG GCTACTACAG CAAAGCCTCG GCCCATTTCA CCCGCTCGGG CAGCTTCAAT 600
TGCGGCGTAA GTGGCTCTTC GCATTTAAGG GTGTAGCTGA TTTCTAAACC CTCCTGACTT CAGCAAGCAC CTGGCTATGT AATTGGTTAA ATTTCTAAAG 700
CCCAAGGCGG TACCTCGTAA GTGCTCAAGT CGCCCGTTGA TAGCTTCTGT TGGACCGTTG CTGGTTCCTG GCCGGTCGAA GTAGGCAAGG ATGCTCTCAG 800
CGTATTTTTT CAGCGTTTCC CCCAAGCCTT TCACCTCGAT GAGCGCTTTG GGCAAGTCGC TGGCTGTAAT GATATTTATG ACCTCTTCCA TGAGTTTTTT 900
ACCACGTTTT CGATCCGGCT CGTTGTAGGC GCTGACCACC CGTTGGTACA TGCTCCAGGT GCAATCCACT TCGAGGTGGT GCTCATCTGC AAACAGCTGG 1000
AACAGTTGCT TTTTGTTGGC GTCAGACAGG TAGCTGATCC GAGTCAGTAG CGTTCGACGG CTTTTGTAGA GCGGGTCATT TTTACGCCCT CTGCGGCCCA 1100
GGATGTCGTG TTGCACACGC CGGCGGCATT CATCCAGCAT GTTGCTTGCC CAGCGCACGA CATGGAAAGG ATCCAGCACG GTTTGGGCTT GAGGCAGGGC 1200
TTCTTGCGCT GCAGATTTAA ACCCCGTAAA ACCGTCCATG GCAATGCTTT CGATCTGGTC ACGCCACGAT TTGGGGCGAC TCTGTAGCCA TTGCTTAAAG 1300
GCTTGTTTGG AGCGGCCTTC CAGCACATCG AGCAAGCGGG CCGGCCCGTT TTTGTTACGC ACGGGCGTAA GGTCAACCAC GATGGTGACG TACTTGTCAC 1400
CACAGCGTGT ATGTCGCCAA ACATGCTCAT CCACGCCCAG CACGGTCACA CCGTCAAAAC GTGTCGAGTC ATTAAAAAGC AGGCGCCGTC CTTCGTTGAT 1500
AATGGCATTA TTAGCGGTGT GCCATGCAAC ATCAAGCTGG CTCGCAACAC GAGATACCGA CAGATGATCC AGCACGATGG CAGCTAATGC CCAGCGTATC 1600
GCCCCATATG AAAGCTTTGA ACGTGGAGGT GCTGCACTGT TTGTATCTTC ATGCCAGAAA CAGCCGCAAG CACAACGCCA GCGACGGATA CGCAGCAGCA 1700
ATCTGGTTGG TCGTTGTCCG TAAGGTGTGT GAGCAAGATG CCTATCGACA GTACCGCGTG AAACACCAGC AGCCCCGCAC TTGGGGCATG GCTCGGGTGC 1800
TTTGGTTAAA CGACATTCGA TGACGGCGCG CTCTGCACAA AGATGTTGTC CAGTGGCAGT CAGGCCGAGG TTATTCAGTT GGCATAAGCT GGAAAGATCA 1900
GGGCTAGAAA AGGTAAGATT GTTCACGTCG GGGGCTTAGT TTTTGTTGGT GTGAGAGCTT ACATTTTCTA AGATCCTCGA CTCCTTTTCC AGCCGGTCAG 2000
ATTTTTTCTA CACCCTTAAA TGCGAAGAGC CGAAAAACCT CTATTAGGAC CTTTCAATGA CCCTGAGTGT GCAGCAGTAC CTGCAGGCCG ACGCCACGGC 2100
GCTGGCCGAT CTGGTCCAGC GTGGCGAGGT CAGCGCCGCC GAGTTGCTGG CCCTGGCCAC GGCCCAGCTA CAACGCCTCA ACCCCCAGCT CAACGCCGTC 2200
AATCGGCCCA TGCCTGAACA GGCCCGCCAG CGCGTGGGTG AGACCCTGGA GGGCCCGTTG GCCGGGGTGC CCGTGCTGAT CAAGGACGCG GTGCAGGACT 2300
ATGCCGGGCT GCCGACCTCC AATGGTAGCC GGGCCTTTCG ACACCACGTT GCCGCCAGCC ACTCGACGGT GGTCCAGCGC CTGCTGGACG CCGGCGCGGT 2400
CATTATCGGC AAGACCAATA CCCCGGAGCT GGCCCTCAAG GGCTTTACCG ATCCCCAGGC CTTCGGCATC ACCCGCAACC CCTGGGACCT GACGCGCACA 2500
CCGGGCGGCT CCAGCGGCGG CTCGGCCGCG GCGGTGGCCG CCGGGATCGT CCCCATGGCC GGGGCCAATG ACGGTGGCGG TTCGATCCGC ATCCCGGCGG 2600
CCTGCTGCGG GCTGCTGGGC CTGCGCCCGT CCCGTGGCCG GGTGCCCTGT GGACCGGCCA GCGGCGAGAT CTGGGAAGGC GCCTCAAGCG ATCTGGTGGT 2700
CTCGCGCAGC GTGCGCGACT CGGCCCTGGC CCTCGACGTC CTGGCCGGCC CGGCGTGCGG CGAGCCCTTC GTGATTGCCC CGCCCGCCCA GTCTTTTCGC 2800
GCATTGCTCA GCGAGGAACC ACGCCGCCTG CGCATCGCCT TCAGCACCCG CTCGCCCCTG GACACCGAGG TCCATCCAGA GGCCATCGCC GCCGTCCAGC 2900
ACACCGTGCG GTTGCTGGAA AAACTCGGCC ACGAGGTGAT CGAGGCCGAA CCACGATACG ACGGCCATGC CCTCGCCCGC TGTTACCTGG ACATGTACTT 3000
CGGCCAGGTC GCCGCGACCC TGGCCGAAGC CCGTGAAGCC GGCGCCCGCA GCGCCGACTT CGAACTCGCG ACCCGTCTGC TCGAAGCCTT TGGCAACGCC 3100
ACTCGCGCCG GCAACTATGT ACGCAGTCAT CGACGCTGGA ACCAGTTCGC CCGCGCCCTG GGCGAGTTCC ATCAGCGTCA TGACCTGTTC CTCACCCCTA 3200
CCCTGGCCTG CCCGCCCGCA CCCCACGCCG CCGCGCAGAT GCCCGCCGGC CAGGAGCGCC TGCTGGGCTG GCTGCTCAAT AGCGGGCTGC TCGGCGTCCT 3300
GGCCCGCCTG GGCCTGATGG AAAAGCCGCT GAACGAGCTG TCGCGACAAA ACCTCAGCTA TGTGCCATTC ACCCAGTTGG CCAACCTGAC CGGCACCCCG 3400
GCGATCAGCG TACCGCTGCA CTGGACCGCC GAAGGCCTGC CATTGGGCGT GCAGTTCATT GCGCCGTTCG GTCAGGAGGG GCGGCTGCTG CAACTGGCCG 3500
CGCAGCTGGA GCGGGCCCAG CCCTGGATGC ATCGCCTGCC TGCCATGGCC TACCCGACCT AGCACTCATG ACCTGGCAGG TCATTGAGCC GCGGGCCTGC 3600
CCGCGGCTAG GGTGAAAGCT CATCACCGAC GCCCGCCCGC GGGCCCTGCC AGGAGCCTCG CCATGCCCCG CTACCCGACA CTCGCCGCTC TTATTGCCCT 3700
GCTGGCGTTT GGCAGCTTTA CGCTGTTCAC GCTGGTACAC GCCGAACAGT CCCTGCTGCA ATTTGGCCGC GAACTACTCG CCCGCCCCGA CACCGCCCAG 3800
GTCGTGATCG ACCTGTACCT GATGGCCGGG CTGGGCGGGA TCTGGATGTA CCGCGATGCC CGTGCCAAAG GCCGTTCATG GCGCTCGCTG CTACCGTACT 3900
GGCTGCTGAC GGCCGTTTTT GTCTCGCTCG GCCCGCTGCT CTATCTGGTG GTCGAGGGAT TTCGCGCGTC TTGCGGCCAT GGCGCTGGCC GCCGCCAGGG 4000
TCTATCTTAG GCGCCTGGCG ACAGCGGCTC GCCGCCCCCA TAACAAGATC GCCGTTCCGC CTTTTACGCA CGCTGATCGT TGCCATGGAA CAGTGGTACG 4100
AGTCGACTCC AGGGTGGTAC ATCACGCCAA AAACACCCGA GAAACGGTGC AAAACACTTT TTGCCTGGCT GGCTCTTCTG ATTCCTGATA GGTTGCACGC 4200
CGTTAAAAAA ACAATGAGCA GGAGTTTTTC GATGCAGTAC TCACGTCTTC CCCACGCCAT CGCCCTGACC CTTGCCGGTT TTTCCAGCTA CAGCCTGGCG 4300
AATGGGCTGG CCCTCAATGA GCAGAGCGTG AGTGGCATGG GCACCGCCTT CGCCGGTCGC GCCTCCTCCG CCCTGGATGC CAGCACCCTG TACGGCAACC 4400
CGGCGGGCAT GTCGAAACTC AAACGCACCG AAGTCGTCGG CGGTGCCGCC TACGTCAAGC CGAAAACCGA CATCAGCGAC GTGAACACCT CGGTCAGCGG 4500
CACCAGCAAG GGCGATATCG CCCCCGGCGC CGCCGTGCCC TTCGGCTATG TCGTGACCCC GCTTAATGAA GACTTTCATT TCGGCCTGGG CTTCTATGTG 4600
CCGTTCGGCG TGGTCAGCGA CAACGAGAAA AGTTTCCAGG GCCGCGCTCA CGGGCTGTAC AGCAAGGTGC AGGTGACGAC CCTGCAGCCA ACCATCAGCT 4700
ACCGCATCAG CGATACCCTT TCGGTGGGCT TCGGTCCAAC CCTCAACAAG ATCGACGGCA AGCTGACCAA CCGCCTGGAC ACTTCGATGC TGGGCGGCAG 4800
TGGTGGTACC AGCCTCAAGA TCAAGGGTGA CGACATCGCC TACGGCTTCA ACCTCGGCGT GCTGTGGGAT GTCACCGACC AGTTGGCCCT GGGCCTCACC 4900
TACCACTCCA AGGTTGAGTA CGAGTTGGAA GGCCACACCA AGGTCGCCAA CTCGCCGGCA GGCATGCTCG ACGGCCGCTT CGACACCAGC CTGGATATCA 5000
CCACCCCCGA ATCGATCGAC GCCTCCCTCA CCTACCGGCT CAATGAGCGC TGGACCACCT ACGCCGGCAT CACCTGGACC CGCTGGAGCC GTCTGGACAA 5100
AATCGTTGCC GAAACCAGCA GCGCGTTTCT GGGCGACATC GACGAGCAGA TGGGCTGGCA CGACACCTGG TCCTACGCCA TCGGCGCCGC TTACCAGCTG 5200
AACCCGCAAT GGGTCCTGCG CGCCGGCCTG GCGCTGGACC AGTCGCCCAC CAGCAATGCC GAGCGCAACG TGCGCATCCC GGTCGGCGAT CGCAAGATCT 5300
TCTCCCTGGG CGCCGGCTGG AGCCCGACCC CGGACGTTAC CATTGACCTG GCCTACTCTT ACCTGCGGGA AGAGTCGGTT AACGTGAATC GCGCGGCGGA 5400
CACCTTCAAA CCGGCCTACA GCGCCCAGTA CCAGAACAGC GCCCACGGGA TCGGCATCCA GCTGACTTAC CGCTTCTAAC CCAAGCGGGT CTGTGGGTAC 5500
ACTCAGGCGC ATGAGGGGTC TGGCACAAGG CCGGTATCTA CCGGCAGTGG TGCCAGGCCT CACCAAAAAT AAGAACAGCA TGAGTACTCA GCATGACAGC 5600
GCTATGCACT TCTCTGCCCG AGCGTCTCTC GCTCCTTCTG GTCGATGACC ACAAAATCTT TCTCGACGGC CTGACCCTGG CCTTGCGACC GCTGACCCGC 5700
GAACTGCAAA TCCACACCGC GCAGAATGCC GTCGAGGCCG AAGCCTGGCT GCAAAAATGC GACTTCGACC TGGTCCTGCT CGACCTGCGC TTGCCGGACG 5800
TGCCGGGGCT GGAGCTGCTG CAGCGCTGGC AGAAGCAGCG GCGCATGACG CCGGTGGCCA TCCTCAGCGC CAGCGACTCC AGTCAGGATG CCCGCGCCGC 5900
CCTGGCGGCC GGCGCCCTGG GCTTCATTGC CAAAAGCGCC GATGGCGAAG CGATTCGCCA AGCCGTGACC CGTGTGCTGC TGGGGGAAAC CTTGCCGGCC 6000
CCGGCGCCGC AGGAGATTTG CCGCCTGACT CCGCGTCAGC AGGAAATCCT GCCGCTGCTG GCCGAGGGCC TGCCCAACAA GCTAATCAGC CGCCGCCTGG 6100
GGCTGTCCGA AGACACGGTC AAGACCCACC TCAAGACCCT GTACCAGGAA CTCAACGTGC ATACCCGCAC CGCCTGTGTC AGCGCCGCGC GGCAACGCGG 6200
CTGGCTCTAA GCACCGCGCC AGGTCGCGCG GCCAAGCCGG AACAGGCGCG CCGCGCGGGT CAGCGCACCA GGGCGCCCCG CTCCGCCCGC AGCAGCAGGC 6300
TCAGCGCCTG GCGCAAACGC ACCGGCAGCA AGGGTTTGCC CTGCAGGTTG ATATTGAGCA GCATGCAGCG CCGCTGCAGC TCGGGGCTGG TGTCGGCACT 6400
CACCAGCAAG GCCGGCAGCA TTCGCCCGAA GCGCTCGCGC AAACGCTCGA TCGCCATCAC CCCGTCCTCC TCCGTGCCCA GGCGGAAGTC GCTGATCAAG 6500
GGGAGCCTAG AGAATTCGGA AAAAATCGTA CGCTAAGGTT TTCCGATCAG TCGTAGGCTC GCCAGTTTGA TATGTTCCGT TCCTGGCCCA GCCAAAACCT 6600
ATCGGTCTTC GCGGGTGTGC CACAGGCGCA GCAGGTAGAT AGTGGAATCC ACTATCTCGT AACGCATCTC GTATTGGCCG ATCTGAATTC GGCGTACATC 6700
CCTTGGCTCG AACTCTTCCA GCCGTTCGCC AATGCGCGGG TTGGTCAGCA GCGTGGTAGG TGCGGCTGTG AGTTGCTGCA CTGTTCGTGC GGCGGCAGGC 6800
TGATTCACCG TGGCAAGAAA CTCGTACAGT CGGGTAATGT CGGAAAGCGC CTTGCTTGTC CACTTCAATT CCATCAGCGC GGCACCGGCA ACGGAGTGTC 6900
GGAGCTGAGG CTGTCAGCCC AGGCCTGGAC GGCTTGGTGG TCAATAACGC GGCCAGCGTC AACATCGGCT AAGGCCTCAC GGGTCAGGCG GCTACGCTCT 7000
TCTTCCTGAT CTATCCAAGC GGACAGAGCC TGTTTGACGA TCCAGTTTTT GGAGCGCTCC AGACGCTCTG CCATCAAATC GACCTTTTGG GCCAGTTGCT 7100
CAGGGACGTG AGCCGTGACA GATCGGGTTT TCGCGGTGGT TGCCATGATG AGGGTTGCTC CTGATCGTTA CTTCTTGAAT TTGATGTCGC CGGATCCGGC 7200
AACGGAATGA TCGCGGATCG GTGGGTTACC ACGGATTACG ATGTCGCCAG AGCCCGCGAC GCGAGCCTTC ACGGAGTTGC TGACATAGGC GTCGATATCG 7300
CCGGAGCCTG CCACCGATAG TTTCGCGGAC GTAGCCACCA GTTCACTGGT GTCCACATCG CCCGAACCGG TGACCTCGGC GTCTAGAAGA TCCACTCGGC 7400
CAAAGGCGGT GATGTCACCC GAGCCTTGGA CGCCAAGATC GAGGACAGCC TGCTGAAGAT CGTATAGGGT CACGTCGCCA CTGCCCTTGA TGCGGATACT 7500
TGGCGCTTCA GGCAGTGCGA CTCCGACAAT ACAACGACCT TTGAACTGCA TCGTGACCCC GCCCTGGCGT CCACCGACAT TGATCGTTCC ACCCACAAAA 7600
ATGTTGCCGG TGCCAGAAAT ATGAATATTG GCACCACCTC CGCTGATGGA AATGCCTTCC TGCTCGATGA CCAGCTCGTC ACCTTCCAAT CGGGTCTTGA 7700
TACTCCGAAT GGCCTCCTGG TTTTCCCCAG CCACAACCAG GTGCGCTGAA GATGAGCGGA AGAACACGAC ATCCGCCGCG CCCTTGACCA CAATTTTGCG 7800
CACCGGCTGG ATTGGTCGCT CTTCCTTCTC GTAGTTGGCT GCGCGTTCCC ACGCGGAATC GCGATGGGTA GCATCCTGGA GAGTTAAGGG GCTGGAATGG 7900
TTCATCGGTC TATCCTTGGT GATTTGTTCT GCGCAGACAT GCGGCAATAC GATTCATAGT TAATCATAAT GAATAATCAT GTGGCGTCAA GCGCGCTGTC 8000
AGGTTGGGCT ATACCCTAAC TGGATGTCAG GAATGGCCAC GCTGCGCCGT CAGAATAGAG TCTGCTTTCA CATTCTTTGA CACATGCTTG CCAAGGTCAT 8100
AGATTCCAAC CTGACAAATT CAAGGCTTAA GGCGCAATGG AACCAAAAAC CAACGTAAGC CCTACCGCCC ATCCAGCCTA TGGAGGCATC TTGCAGGGAC 8200
AACGCATCGG TTACGTTCGG GTCAGCAGTT ACGACCAGAA CCCGGAACGC CAACTTGAGC AGGTCGAGAT CGGCAAGCTG TTCACCGACA AGGCCTCGGG 8300
CAAGGACACC CAGCGCCCGC AGCTGGAAGC CATGCTCGGA TTCGTCCGCG AAGGCGATAC CGTGGTGGTG CACAGCATGG ATCGCCTGGC GCGCAACCTC 8400
GACGATCTGC GCCGTCTGGT GCAAAGGCTG ACCAAGCGCG GCGTGCGCAT CGAGTTCTTG AAGGAGGGGT TGGTGTTCAC CGGCGAGGAC TCGCCCATGG 8500
CCAACCTCAT GTTGTCGGTC ATGGGGGCCT TTGCCGAGTT CGAGCGCGCC CTGATCCGCG AGCGGCAGCG CGAGGGCATC GCCCTGGCCA AGCAGCGCGG 8600
TGCTTACCGG GGCCGCAAGA AAGCTCTCTC CGACGATCAA GCCATCACGT TGCGGCAGCG GGCCGCTGCC GGCGAGCCGA AGGCTCAGCT CGCACGCGAG 8700
TTCGGCATCA GCCGTGAAAC CCTCTACCAG TACCTTCGCA CGGACGACTG AACCATGCCG CGTCGCTCGA TTCTCTCGGC TACGGAGCGC GACACCCTGC 8800
TTGCGCTGCC AGAAAGCCAG GATGACCTGA TCCGCTACTA CACCTTCAAC GACTCCGACC TATCCCTGAT CCGTCAACGG CGGGGCGATG GCAACCGCCT 8900
CGGCTTCGCC GTGCAGCTCT GCCTGCTGCG CTACCCTGGT TATGCGCTGG GCAACGACAC GGCGCTACCC GAGCCCGTGA TCCAGTGGGT GGCCAAGCAA 9000
GTCCAAGCCG ACCCCGCGAG TTGGGCGAAG TACGGTGAGC GCGACGTGAC CCGCCGCGAG CACGCTCTGG AACTGCGCAC CTACCTGCAA CTGGCCCCGT 9100
TCGGTCTGTC GGACTTCCGC GCCCTGGTGC GCGAGTTGAC CGAGCTGGCC CAGCAGACCG ACAAGGGCTT GCTGCTGGCC GGGCAGGCGC TGGAGAGCTT 9200
GCGCCAGAAG CGGCGCATCC TGCCGACGCT GAGCGTTATT GACCGGGCGT GTTCGGAGGC CATTGCACGC GCCAATCGGC GGGTCTATCG CGCCCTGATC 9300
GAGCCGTTGA ACCCATCGCA TCACGCCAAG CTCGACGAAC TGCTCACCAT TAAGGCCGGC AGCAACAGCA CTTGGTTGAC CTGGTTGCGG CAATCACCGC 9400
TGAAGCCGAA CTCGCGGCAC ATGATCGAGC ACATCGAGCG GCTGAAGATT TTCCAACTGG TGGGCCTTCC CGACAGCCTC GGCCGGCACA TCCACCAGAA 9500
CCGATTGCTG AAGCTCGCCC GCGAGGGCGG GCAGATGACG CCACAAGACC TCGGCAAGTT CGAACCGGAG AGGCGCTATG CCACGCTGGT CGCCGTGGTA 9600
CTGGAAAGCA CCGCGACCGT GATCGATGAA CTGGTTGATC TGCACGACCG CATCCTGGTC AAGCTGTTCA GTGGCGCGAA ACACAAGCAT CAGCAGCAGT 9700
TCCAGAAGCA GGGCAAAGCG ATCAATGACA AGGTGCGCCT GTACTCGAAG ATCGGCCAGG CCCTGCTGGA CGCTAAAGAG TCCGGTGACG ATCCGTTCGC 9800
CGCCATCGAG GCGGTCATTC CCTGGGACGA GTTCACCCAG AGTGTCACTG AGGCCGAGCT GCTGGCCCGG CCGGAAGCCT TCGACCACCT GCACCTGGTC 9900
AGCGAGAACT TCGCTACGCT ACGCCGCTAC ACCCCAGCCT TTCTGGAGGT GCTTCAGCTC CGAGCCGCGA CGGCAGCGCA AGCCGTGCTG GATGCCGTTC 10000
AGACCCTACG CGAGATGAAT GCCGATAATC TGCGCAAGGT GCCCTCCGAC GCACCGACCG CCTTCATCAA GCCGCGCTGG AAACCGCTGG TGATCACCCC 10100
GGAAGGCATC GACCGGCGCT TCTACGAAAT CTGCGCCTTG TCCGAGTTGA AGAACGCGCT GCGCTCCGGC GACATCTGGG TCAAAGGCTC GCGGCAGTTC 10200
CGCGACTTCG ATGACTACCT ACTGCCTCCC GAGAAATTCG CCGCACTCAA GCGGGAACAG GCGCTGCCAC TCGCGATCAA CCCGAACAGC GACCAGTACC 10300
TGGAAGAGCG TTTGCAGCTG CTGGACGAGC AGCTGGCCAC TGTCACCCGA CTGGCAAAGG ACAACGAACT ACCCGATGCC ATCCTCACCG AGTCCGGGCT 10400
AAAAATCACC CCGCTGGATT CCGCGGTGCC CAACACCGCG CAGGCGCTGA TCGACCAGAC CAGCCAGCTA CTGCCGCGCA TCAAGATCAC CGAGCTGCTG 10500
ATGGATGTGG ATGAATGGAC GGGCTTCACC CGCCACTTCA CGCACCTGAA GGATGGCGCA CAGGCGAAAG ACCGGACGCT ACTGCTAACG GCGATCCTGG 10600
GCGATGCCAT CAACCTCGGC CTGACCAAAA TGGCCGAGTC GAGTCCGGGC ATGACCTACG CCAAGCTGTC CTGGTTGCAA GCCTGGCACA TCCGTGACGA 10700
AACCTACTCG ACGGCCCTGG CCGAGCTGGT CAACAGCCAG TTCCGGCATG CCTTCGCCGC CAACTGGGGT GACGGCACCA CCTCATCCTC CGATGGCCAG 10800
CGTTTCCGTG CCGGCGGTAA AGGCGAGAGC ACCGGCCACG TCAACCCGAA GTACGGTAGC GAGCCAGGAC GGCTGTTCTA CACCCACATC TCTGACCAGT 10900
ACGCGCCGTT CAGCACCCGC GTGGTGAATG TAGGCGTGCG TGATTCCACC TACGTGCTCG ACGGTCTGCT GTACCACGAG TCCGATCTGC GGATCGAGGA 11000
GCACTACACC GACACCGCTG GCTTCACCGA TCACGTCTTC GCCCTGATGC ACCTGCTGGG CTTCCGCTTC GCGCCGCGCA TCCGCGACCT CGGTGAAACC 11100
AAGTTGTATG TGCCCAATAG CGTCCAAGAC TACCCGACGC TGCGTCCAAT GCTCGGCGGA ACCCTGAACA TCAAGCACGT CTGCGCTCAC TGGGACGAGA 11200
TTCTGCGGCT GGCCGCGTCG ATCAAGCAGG GCACCGTCAC CGCATCGCTG ATGCTGCGCA AGCTTGGCAG CTACCCGCGC CAGAACGGCC TGGCCGTGGC 11300
TCTGCGCGAG CTGGGTCGGA TCGAGCGCAC GCTGTTCATC CTCGATTGGC TGCAAAGCGT GGAACTGCGT CGCCGCGTGC ATGCCGGATT GAACAAGGGC 11400
GAGGCGCGTA ACTCCCTGGC CAGGGCGGTG TTCTTCAACC GCCTCGGCGA GATCAGGGAT CGGAGTTTCG AGCAGCAGCG CTACCGGGCC AGCGGCCTCA 11500
ACCTGGTGAC GGCCGCCATC GTGTTGTGGA ACACCGTGTA CTTGGAGCGC GCGACCCAGG CCCGAGAAGA GGCAGGCAAG CCAGTTAATC CTGAGTTACT 11600
GCAATACCTT TCGCCATTGG GCTGGGAGCA CATCAACCTG ACCGGCGATT ACGTTTGGCG GCAAAGCCGC AAGCTGGAAG ACGGGAAATT CAGGCCGCTG 11700
CGGCAGCTCG GAAAACCTTA GCGTACGATT TTTTCCGAGT TCTGCGGGCT CCCC
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| Recombination Sites |
|
|
| Name |
Coordinates |
Gene |
Sequence |
| res |
7994-8116 |
123 |
CGCTGTCAGG TTGGGCTATA CCCTAACTGG ATGTCAGGAA TGGCCACGCT GCGCCGTCAG
AATAGAGTCT GCTTTCACAT TCTTTGACAC ATGCTTGCCA AGGTCATAGA TTCCAACCTG
ACA |
| res_site_I |
7994-8031 |
38 |
CGCTGTCAGG TTGGGCTATA CCCTAACTGG ATGTCAGG |
| res_site_II |
8056-8082 |
27 |
TAGAGTCTGC TTTCACATTC TTTGACA |
| res_site_III |
8085-8116 |
32 |
TGCTTGCCAA GGTCATAGAT TCCAACCTGA CA |
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnp |
IS1411 |
625-1926 |
Transposase |
|
- |
| amidase |
TnPa40.1 |
2063-3562 |
Passenger Gene |
Other |
+ |
| WP_049251069.1 |
TnPa40.1 |
3663-4010 |
Passenger Gene |
Hypothetical |
+ |
| tonB-dependent receptor |
TnPa40.1 |
3878-5479 |
Passenger Gene |
Other |
+ |
| DNA-binding response regulator |
TnPa40.1 |
5593-6210 |
Passenger Gene |
Other |
+ |
| WP_085286981.1 |
TnPa40.1 |
7168-7905 |
Passenger Gene |
Hypothetical |
- |
| tnpR |
TnPa40.1 |
8137-8751 |
Accessory Gene |
Resolvase |
+ |
| tnpA |
TnPa40.1 |
8755-11721 |
Transposase |
|
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS1411 |
1302 |
625-1926 |
- |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
VNNLTFSSPD LSSLCQLNNL GLTATGQHLC AERAVIECRL TKAPEPCPKC GAAGVSRGTV DRHLAHTPYG QRPTRLLLRI RRWRCACGCF WHEDTNSAAP
PRSKLSYGAI RWALAAIVLD HLSVSRVASQ LDVAWHTANN AIINEGRRLL FNDSTRFDGV TVLGVDEHVW RHTRCGDKYV TIVVDLTPVR NKNGPARLLD
VLEGRSKQAF KQWLQSRPKS WRDQIESIAM DGFTGFKSAA QEALPQAQTV LDPFHVVRWA SNMLDECRRR VQHDILGRRG RKNDPLYKSR RTLLTRISYL
SDANKKQLFQ LFADEHHLEV DCTWSMYQRV VSAYNEPDRK RGKKLMEEVI NIITASDLPK ALIEVKGLGE TLKKYAESIL AYFDRPGTSN GPTEAINGRL
EHLRGTALGF RNLTNYIARC LLKSGGFRNQ LHP
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| amidase |
Amidase |
TnPa40.1 |
1500 |
2063-3562 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Other |
Protein Sequence:
|
MSVQQYLQAD ATALADLVQR GEVSAAELLA LATAQLQRLN PQLNAVNRPM PEQARQRVGE TLEGPLAGVP VLIKDAVQDY AGLPTSNGSR AFRHHVAASH
STVVQRLLDA GAVIIGKTNT PELALKGFTD PQAFGITRNP WDLTRTPGGS SGGSAAAVAA GIVPMAGAND GGGSIRIPAA CCGLLGLRPS RGRVPCGPAS
GEIWEGASSD LVVSRSVRDS ALALDVLAGP ACGEPFVIAP PAQSFRALLS EEPRRLRIAF STRSPLDTEV HPEAIAAVQH TVRLLEKLGH EVIEAEPRYD
GHALARCYLD MYFGQVAATL AEAREAGARS ADFELATRLL EAFGNATRAG NYVRSHRRWN QFARALGEFH QRHDLFLTPT LACPPAPHAA AQMPAGQERL
LGWLLNSGLL GVLARLGLME KPLNELSRQN LSYVPFTQLA NLTGTPAISV PLHWTAEGLP LGVQFIAPFG QEGRLLQLAA QLERAQPWMH RLPAMAYPT
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| WP_049251069.1 |
WP_049251069.1 |
TnPa40.1 |
348 |
3663-4010 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Hypothetical |
Protein Sequence:
|
MPRYPTLAAL IALLAFGSFT LFTLVHAEQS LLQFGRELLA RPDTAQVVID LYLMAGLGGI WMYRDARAKG RSWRSLLPYW LLTAVFVSLG PLLYLVVEGF
RASCGHGAGR RQGLS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tonB-dependent receptor |
TonB-dependent receptor |
TnPa40.1 |
1602 |
3878-5479 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Other |
Protein Sequence:
|
MALAATVLAA DGRFCLARPA ALSGGRGISR VLRPWRWPPP GSILGAWRQR LAAPITRSPF RLLRTLIVAM EQWYESTPGW YITPKTPEKR CKTLFAWLAL
LIPDRLHAVK KTMSRSFSMQ YSRLPHAIAL TLAGFSSYSL ANGLALNEQS VSGMGTAFAG RASSALDAST LYGNPAGMSK LKRTEVVGGA AYVKPKTDIS
DVNTSVSGTS KGDIAPGAAV PFGYVVTPLN EDFHFGLGFY VPFGVVSDNE KSFQGRAHGL YSKVQVTTLQ PTISYRISDT LSVGFGPTLN KIDGKLTNRL
DTSMLGGSGG TSLKIKGDDI AYGFNLGVLW DVTDQLALGL TYHSKVEYEL EGHTKVANSP AGMLDGRFDT SLDITTPESI DASLTYRLNE RWTTYAGITW
TRWSRLDKIV AETSSAFLGD IDEQMGWHDT WSYAIGAAYQ LNPQWVLRAG LALDQSPTSN AERNVRIPVG DRKIFSLGAG WSPTPDVTID LAYSYLREES
VNVNRAADTF KPAYSAQYQN SAHGIGIQLT YRF
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| DNA-binding response regulator |
DNA-binding response regulator |
TnPa40.1 |
618 |
5593-6210 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Other |
Protein Sequence:
|
MTALCTSLPE RLSLLLVDDH KIFLDGLTLA LRPLTRELQI HTAQNAVEAE AWLQKCDFDL VLLDLRLPDV PGLELLQRWQ KQRRMTPVAI LSASDSSQDA
RAALAAGALG FIAKSADGEA IRQAVTRVLL GETLPAPAPQ EICRLTPRQQ EILPLLAEGL PNKLISRRLG LSEDTVKTHL KTLYQELNVH TRTACVSAAR
QRGWL
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| WP_085286981.1 |
WP_085286981.1 |
TnPa40.1 |
738 |
7168-7905 |
- |
| Class: | Passenger Gene |
| Sub Class: | Hypothetical |
Protein Sequence:
|
MNHSSPLTLQ DATHRDSAWE RAANYEKEER PIQPVRKIVV KGAADVVFFR SSSAHLVVAG ENQEAIRSIK TRLEGDELVI EQEGISISGG GANIHISGTG
NIFVGGTINV GGRQGGVTMQ FKGRCIVGVA LPEAPSIRIK GSGDVTLYDL QQAVLDLGVQ GSGDITAFGR VDLLDAEVTG SGDVDTSELV ATSAKLSVAG
SGDIDAYVSN SVKARVAGSG DIVIRGNPPI RDHSVAGSGD IKFKK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
TnPa40.1 |
615 |
8137-8751 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MEPKTNVSPT AHPAYGGILQ GQRIGYVRVS SYDQNPERQL EQVEIGKLFT DKASGKDTQR PQLEAMLGFV REGDTVVVHS MDRLARNLDD LRRLVQRLTK
RGVRIEFLKE GLVFTGEDSP MANLMLSVMG AFAEFERALI RERQREGIAL AKQRGAYRGR KKALSDDQAI TLRQRAAAGE PKAQLAREFG ISRETLYQYL
RTDD
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
TnPa40.1 |
2967 |
8755-11721 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MPRRSILSAT ERDTLLALPE SQDDLIRYYT FNDSDLSLIR QRRGDGNRLG FAVQLCLLRY PGYALGNDTA LPEPVIQWVA KQVQADPASW AKYGERDVTR
REHALELRTY LQLAPFGLSD FRALVRELTE LAQQTDKGLL LAGQALESLR QKRRILPTLS VIDRACSEAI ARANRRVYRA LIEPLNPSHH AKLDELLTIK
AGSNSTWLTW LRQSPLKPNS RHMIEHIERL KIFQLVGLPD SLGRHIHQNR LLKLAREGGQ MTPQDLGKFE PERRYATLVA VVLESTATVI DELVDLHDRI
LVKLFSGAKH KHQQQFQKQG KAINDKVRLY SKIGQALLDA KESGDDPFAA IEAVIPWDEF TQSVTEAELL ARPEAFDHLH LVSENFATLR RYTPAFLEVL
QLRAATAAQA VLDAVQTLRE MNADNLRKVP SDAPTAFIKP RWKPLVITPE GIDRRFYEIC ALSELKNALR SGDIWVKGSR QFRDFDDYLL PPEKFAALKR
EQALPLAINP NSDQYLEERL QLLDEQLATV TRLAKDNELP DAILTESGLK ITPLDSAVPN TAQALIDQTS QLLPRIKITE LLMDVDEWTG FTRHFTHLKD
GAQAKDRTLL LTAILGDAIN LGLTKMAESS PGMTYAKLSW LQAWHIRDET YSTALAELVN SQFRHAFAAN WGDGTTSSSD GQRFRAGGKG ESTGHVNPKY
GSEPGRLFYT HISDQYAPFS TRVVNVGVRD STYVLDGLLY HESDLRIEEH YTDTAGFTDH VFALMHLLGF RFAPRIRDLG ETKLYVPNSV QDYPTLRPML
GGTLNIKHVC AHWDEILRLA ASIKQGTVTA SLMLRKLGSY PRQNGLAVAL RELGRIERTL FILDWLQSVE LRRRVHAGLN KGEARNSLAR AVFFNRLGEI
RDRSFEQQRY RASGLNLVTA AIVLWNTVYL ERATQAREEA GKPVNPELLQ YLSPLGWEHI NLTGDYVWRQ SRKLEDGKFR PLRQLGKP
|
|
| Internal Transposable Elements (TE) |
|
|
| TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
| IS1411-M57500 |
IS1411 |
Insertion Sequence |
613-2031 |
1419 |
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| IRR |
IS1411 |
613-636 |
GGCTCTTCGC ATTTAAGGGT GTAG |
| IRL |
IS1411 |
2008-2031 |
GATGTGGGAA TTTACGCTTC TCGG |
| IR int |
TnPa40.1 |
6500-6538 |
GGGGAGCCTA GAGAATTCGG AAAAAATCGT ACGCTAAGG |
|
|
