 |
|
|
|
|
|
|
|
|
|
|
|
Recombination Sites | |
|
|
|
|
|
Internal Transposable Elements | |
|
|
Internal Repeats | |
|
|
References | |
|
|
|
|
|
|
|
|
|
| Name: TnChe1 (Synonyms: Tn7155) |
|
| Family: Tn3 Group: Tn163 |
|
| Evidence of Transposition: yes |
|
|
|
| Host |
 |
|
| Host Organism: | Chelativorans sp. BNC1 | Molecular Source: | plasmid 2 |
| | Date of Isolation: | 2006 |
|
| Map |
|
| Terminal Inverted Repeats (IR) |
|
|
| | |
| IRL (Length: 56 bp) |  | GGGGTCGGAACAAGAGCAGTGCAAAATCGTACGCTAAGGTCGAACGGATCGTGAAC |
| IRR (Length: 56 bp) | | GGGGTCGGAACAAGAGCAGTGCCAAATCGTACGCTAAGGCCGAACGGATGGTGAAC |
|
| Sequence |
|
|
|
|
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTCGGAA CAAGAGCAGT GCAAAATCGT ACGCTAAGGT CGAACGGATC GTGAACCCTC GTCGCGAACC CGCATAATGG TCTGTCGGCT GGTGGCAAAT 100
TTCCTGGCGA TCGCTGAAAC GCTCATCCCC TTGGCAAGAT CACCGCGCAC ATCCTGCTTC TGCTTTTCAC TGAGCCTCGA AGGGCGGCCA AGGGCCTTTC 200
CTTCCGATTT GGCGCGCTTG AGACCGGACT GTGTCCGCTC GATCAGCAAA TCGCGCTCGA ACTGTGCGAC GGCATTGAGC ACGTTCATGG TCATCGTGCC 300
GGCCGAACTG GCGAGATCGG CGCCGCCGAG TGCGAGGCAA TAGACCTTCA CACCCATTTC GGCCAGCGTC CTGACGGTGG TGCTGACGTC GATCGCATCA 400
CGACCGAGCC GGTCGAGCTT GGTCACGATG AGAATATCGC CGGACTCCAG CTTATCCATG AGTCGGGAAA AGCCGCGGCG CTGCGCAATG GCGGTGCTGC 500
CGGAAACCGT CTCGGTGACG ATGCGGCGCG GTTCGACATG AAAGCCGGCT GCTTCGATCT CCTGGATCTG GTTTTCGGTG GTTTGTCCGG TCGTCGAGAC 600
GCGAACATAG GCGAAGGTGC GTGGCATGAG GTCGATTTCG TCCGAATAGG CTGTCCGAAA TATCCTTCCT GTTCAAAAGC CTGTCAAGAT AGTTTGTGGA 700
CAGGTCGTTT TACCCCTGTA CGGAATCGTC CGTTTCCGAA CAGAGGCTTG GGCCAGCGGT ACGGAGTTGC AGGAGGAATA GATGGCCAAA CGGACGCTTC 800
TAAAAGTTCA GGATCGACAG GAGCTTTTCT GCATTCCCAC CGATGACGAC AGCCTGATCC GCCATTATTC CCTGTCACCG GCCGATCGGC TGGAAATCGA 900
GCTTCGCAGG CGCAAGCACA ACCAGCTTGG CTTTGCGTTG CAGCTCTGCC TGATGCGCCA TCCTGGCCGG CCGCTCATGC CGAACGAGAC TCCTCCGGGC 1000
GCGATGCTCA ATTATGTCGC CGAACAGATC GACGCTGATC CCAGACTATT TGATCTCTAC GCCCGCCGTG AGGAAACTCG CCGCGATCAC ATCGCACACC 1100
TGCTCGGCTA TCTGGAAATG CGAAGCCCGA CAGCCGATGA CCGTCGTACG GCGCTGATGG CAGCCATCGA CGCGGCCTCA ACAACAGATA AGGGGGCGGT 1200
GATCGCAAAG GCAATCATTG CCACGTTCCG GGAGCGCCGG GTTCTCCTGC CGGCGGTGAA CATGATCGAA CGCATGGGGT TGGCAGCGCG CGCTGTTGCT 1300
CGCCGCCGCG CAGAGCACGC GCTGATCTCG GATCTCGATC CGGAAAAGCT TGAAACCCTC GATGCCTTGC TGAACATTGA TCCGGCGATC GGACAGACGC 1400
GCTTTCATTG GCTGCGCTCT GCTCCCGACG CCCCCGGAGC AGGCAACCTG GTCGGCTTGA CGGAACGGAT CGCGTTCCTG CGCTCGCTTG GGATCGATCC 1500
TCGTTTACAG GCCCGCATCC CCTCCGGACG ATGGGAGCAG ATGGTCCGCG AAGGTGATGC CACACCGGCC TGGCTCGCCA GTGACTTCAA CGCCAGCCGT 1600
CGCCGTGCGA CAATCGTGGC CCAGGTGATC AAGCTCGGCC AGAAGCTCAC CGACGATGCG GTAATGATGT TCATCAAGCT GATGGGCCGG CTATTCTCCC 1700
AGGCCAACAA CCGGAAAAAG CAGCGTCACA TGAACGCCCG CATCGAAACA TCCAGGGCGC TGCGACTGTT CCTCGACACG ATCGTTGCCT TGCAGGCAGC 1800
GAACGACAAT GATGTCGATC CCATGACGAT ACTGGACAGG CGCGTGGGCT GGCATCGGCT GCTGCAGATC AAACCCAGCC TTGAGGCCAT GGTGGAGAAC 1900
GGCGACATGT CACCGCTGGT GCTGGCGGCC GAGCAACATG GAAACATCCG CAAGTTTGCC GGCGCTTTCC TTCAGGCATT CACGTTCCGC TCGCGCCGCC 2000
GGCACGATCC GCTGCTTGCG GCGGTCGCGA CCCTGAAAAT GCTTTATGTG GAGGGACGCC GTGTTCTGCC GGATCGCGTG CCGGTCGGCC ATCTGGGTGC 2100
GAACGAAAGG AAACTGGTCT TCGAGGATGG CAAGCCGGAT CGGCGGCTTT ATGAAATCGC CACCTTCGCT CATTTACGGG ACCGGCTGCA TTCGCGCGAT 2200
GTGTGGGTCG AGGGCAGCCG GTCATTCCGG CCGATAGACG AAGATCTCAT GCCGAAGCCA ACCTTTGTCG CTCTGAAGGG GCAAGATCAG CTCGGACTCG 2300
GTGTCCCGTC CGACTGCGCT ATCTGGCTGG CTGAAGTCGG GCAAATGATG GACTTCAATC TCAAACGGCT GGCCTGGCGC GCCCGTTTCG GCAAGCTCGA 2400
TGGTGTGAGG ATGGAAAACG GCACGCTGAC CGTGACGCCG CATACCAGCG ATGTTCCCGC AGCGGCGGAA GCCCTCAATG CCGAAATCAC GGACATGTAT 2500
CCTCTGGTCG AGGTGCCCGA TCTCTTGCGG GAGGTACATG AATGGACCGG ATTTGCCGAC CAGTTCACCC ACGTCCGGAC GGGAGATGCG CCACAAAACA 2600
TCGCCGCCAT ACTGGCCGGC GTGCTTGCCG ATGGCACGAA TCTCGGCCCG AAACGCATGG CGGGGGCGTC GAAGGGGATC AGCGCCCACC AGATCGGCTG 2700
GATGCGCAGC TTCCATGCCC GCTCCGAAAC CTATCGGGCC GCGCAGGCCT GCGTCACCGA TGCCCATACC CGCCATCCGC ATGCGCAAAT CTGGGGCGAC 2800
GGAACGACAG CCTCATCCGA TGGGCAATTC TTCCGCGCCA GTGACCGGGC CGCAAGGCGC AGCGACATCA ACCTGCATTA TGGCAGCGAA CCGGGCTCGA 2900
AGTTCTACAG CGGTCTTTCC GACCAGTACG GCTATTACAG CATCCTGCCG ATCAGCCCGA CCGAGAGCGA GGCCGTCTAT GTGCTCGACG GCCTATTCGA 3000
CCACGACACG ATTCTGGAGA TCGAGGAGTT GTTCACGGAC ACCGGCGGCG CAAGCGATCA TGTCTTTGCG CTGTTCTGCC TGATCGGTAG GCGCTTCGCG 3100
CCACGTCTTC GCAACATCAA GGACAGAAAA TTCCATACCT TCGAAAAAGC CGATGCCTAT CCGACGCTGG CGAATCATAT CGGCGCGCCT ATCAACACCG 3200
CGCTCATCAT GGAACATTGG GACGAGCTCC TGCGCCTTGC CGCGTCAATC ACCACGCGCA CCGTCGCGCC GTCAGCGATT CTCAAACGGT TGTCCGCCTC 3300
GTCCAAATCC AGCGATCTGG CCAAAGCGTT ACGCGAACTC GGTCGCATCG AGCGCACCCT GTTCATGATC GAATGGTATT CCAGCCCGGC GCTGCGCCGG 3400
CGCTGTCAGG CCGGGCTCAA CAAAGGCGAA GCCGCTCACA AGCTCAAGCG CGCCGTCTTT TTCCACGAGC GCGGCGAAAT CCGTGATCGT TCCTTTGACA 3500
GTCAGGCATT CCGGGCTTCC GGCCTCAACC TCGTGGTCAG CGCCATCGTT CATTGGAACA CCGTCTATCT CAGCCGGGCA ACGGCTCATT TGCGCCAGCG 3600
AGGCCGGAAT ATTCCCGACG GATTGCTGAA GCACGTCTCG CCGCTCAGCT GGGAGCACAT CAATCTCACC GGCATCTATT CCTGGGACAC CGAGCAGCAG 3700
TTGTCCGAAG GCTTCAGGCC CTTGCGGCTT CCCGGCCGAA TGTTGCGCGC CGCATGACGT TCACCATCCG TTCGGCCTTA GCGTACGATT TGGCACTGCT 3800
CTTGTTCCGA CCCC
|
|
|
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnpR |
TnChe1 |
34-627 |
Accessory Gene |
Resolvase |
- |
| tnpA |
TnChe1 |
782-3757 |
Transposase |
|
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
TnChe1 |
594 |
34-627 |
- |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MPRTFAYVRV STTGQTTENQ IQEIEAAGFH VEPRRIVTET VSGSTAIAQR RGFSRLMDKL ESGDILIVTK LDRLGRDAID VSTTVRTLAE MGVKVYCLAL
GGADLASSAG TMTMNVLNAV AQFERDLLIE RTQSGLKRAK SEGKALGRPS RLSEKQKQDV RGDLAKGMSV SAIARKFATS RQTIMRVRDE GSRSVRP
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
TnChe1 |
2976 |
782-3757 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MAKRTLLKVQ DRQELFCIPT DDDSLIRHYS LSPADRLEIE LRRRKHNQLG FALQLCLMRH PGRPLMPNET PPGAMLNYVA EQIDADPRLF DLYARREETR
RDHIAHLLGY LEMRSPTADD RRTALMAAID AASTTDKGAV IAKAIIATFR ERRVLLPAVN MIERMGLAAR AVARRRAEHA LISDLDPEKL ETLDALLNID
PAIGQTRFHW LRSAPDAPGA GNLVGLTERI AFLRSLGIDP RLQARIPSGR WEQMVREGDA TPAWLASDFN ASRRRATIVA QVIKLGQKLT DDAVMMFIKL
MGRLFSQANN RKKQRHMNAR IETSRALRLF LDTIVALQAA NDNDVDPMTI LDRRVGWHRL LQIKPSLEAM VENGDMSPLV LAAEQHGNIR KFAGAFLQAF
TFRSRRRHDP LLAAVATLKM LYVEGRRVLP DRVPVGHLGA NERKLVFEDG KPDRRLYEIA TFAHLRDRLH SRDVWVEGSR SFRPIDEDLM PKPTFVALKG
QDQLGLGVPS DCAIWLAEVG QMMDFNLKRL AWRARFGKLD GVRMENGTLT VTPHTSDVPA AAEALNAEIT DMYPLVEVPD LLREVHEWTG FADQFTHVRT
GDAPQNIAAI LAGVLADGTN LGPKRMAGAS KGISAHQIGW MRSFHARSET YRAAQACVTD AHTRHPHAQI WGDGTTASSD GQFFRASDRA ARRSDINLHY
GSEPGSKFYS GLSDQYGYYS ILPISPTESE AVYVLDGLFD HDTILEIEEL FTDTGGASDH VFALFCLIGR RFAPRLRNIK DRKFHTFEKA DAYPTLANHI
GAPINTALIM EHWDELLRLA ASITTRTVAP SAILKRLSAS SKSSDLAKAL RELGRIERTL FMIEWYSSPA LRRRCQAGLN KGEAAHKLKR AVFFHERGEI
RDRSFDSQAF RASGLNLVVS AIVHWNTVYL SRATAHLRQR GRNIPDGLLK HVSPLSWEHI NLTGIYSWDT EQQLSEGFRP LRLPGRMLRA A
|
|
|
