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Recombination Sites | |
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Internal Transposable Elements | |
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Internal Repeats | |
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References | |
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| Name: TnAcsp1 (Synonyms: Tn7133) |
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| Family: Tn3 Group: Tn21 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Acinetobacter baumannii D46 | Molecular Source: | plasmid pD46-4 |
| Place of Origin: | Sydney, Australia | Date of Isolation: | 2017 |
| | Other Geographic Information: | Royal North Shore Hospital 2010 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 46 bp) |  | GGGGTCGTCTCAGGAAACGGAAAATATAGCACGCTAAGGATTTTCA |
| IRR (Length: 46 bp) | | GGGGTCGTCTCAGGAAACGGAAAATATAGCACGCTAAGGTTTTTCA |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTCGTCT CAGGAAACGG AAAATATAGC ACGCTAAGGA TTTTCACTCC GACTTCTTTT AACGATATCC AACACGGTAT TTTTGCTTAG ATTGACCAGC 100
CGACCGACTT GTCGATAAGA GTGTCCAGCA GACACCAACT CCAACACTTT AGGTGCCAGA CGATCTGACT TGGTACGTTG ACCAGGACGA CGACCAAACA 200
CAACGCCCCG CGCTTGTGCC GCTGCTACAC CAGAGCGCAC ACGTTCACGT AGTAAATCTC CCTCAAACTC TGCTAATGCA GACATCACAG AAGCCATGAG 300
CTTTCCCTGA GATGTGGAAA GGTCAAACTG CAAACCTGTT TGTGCCACCA GAGATACCCC GAAATGCCCA AGATCTTGTA ATGACTGTAC GAGATCCACG 400
GTGCTTCTGC CCCAGCGTGT CAATTCCGTC ACCAAGATGG CATCGATTTC ACGAGATTGC GCCATGGTCA TCAAGTATTT TCTTTGCAAT CTCTCATCCT 500
TACTGCCTGA TGCAGTTTCT TTCCAAACAC CGACAACATC GTAGCCGCAA CGATTGGCGT AGGCACGTAG GTCATATTCC TGTCGTTCGC AGGACTGATC 600
GTTCGTTGAT ACTCGGCAAT AAATGGCCGC ATTCTGTCCC AATTGAACCT CCTTGCGAAA TTGCAGCGCA AAGCTAAGCG TGGCGGTACA AAATAATGTA 700
CCTTTAATAG TTTAGTTTAT TTGGGACTAA TGAGCCATGC CGCGCCATTC TATTTTGTCG TCCACGGAAT TGGGAAGCCT GTTCGAAATT CCAGATGATA 800
GAGCTTTTAT GCTTCAGCAT TACACTCTGA GTGATTCTGA TAAATCCATA GTCCATCAAC ATCGAGGGGC ATCCAACAAG CTAGGCTTTG CAATTCAACT 900
TTGCTACATG CGTTACCCTG GAGTGATATT GGGTATTAAC GACGAACCAT TCAAACCCTT ACTTTTCATG ATGGCTGCTC AACTTAGTAT ATCAGTGGAC 1000
TGCTGGAATG ATTATGGTCA GCGCGAGCAA ACAAGACGAG AACATATTGC CGAATTGAAA AAAGTTTTTG GGTTCAAACT ATTCACCTTG AGTGACTATC 1100
GGCAATCGGT CAATATGATG GTGGATTTGT CCCTTCAGAC AGATAAAGGT CTTATTTTAG CCACAACTCT CGTTGAAAAT TTACGACAAA AATCAGTCCT 1200
TTTGCCAGCT ATAAATGCAA TTGATAGTAT TTGCGCAGAA GCAATCACAT CTGCCAACCG CATAATTTAT ACTGCTTTGA CGAGCTCACT TTCAGAAACT 1300
CATCGTCAAA ATATAGATGC TTTGCTGAAC CGTAAAGAGG GCAGCAAACT GACAATATTG GGGTGGCTTA GACAGTCACC AGCTAAACCA AACTCAAAGT 1400
ACATGCTTGA GCACATTGAG CGGCTGAAGT GCTTACAAGC CATCGATCTA CCTGAAGACA TTGGAAAACA CGTTCATCAA AATCGCTTAC TGAAAATTGC 1500
TCGCGAAGGT GGGCAAATGA CTCCTGCTGA TTTGGCCAGA TTTGAATCTC AACGTCGATA TGCCACTTTG GTAGCAATCG TTGTGGAGAG TATGGCCACG 1600
ATCACCGACG AAATTATTGA CCTGCATGAT CGCATTATTG GAAAGCTATT TGCTATCGCA AAAAATAAAC ACCAGCAACA ATTTCAATCA TCAGGTAAAG 1700
CGATCAACGA CAAAGTGCGT TTGTATGGGC TTATCGGGAA AGCCTTGCTA GATGCCAAGC AAAATGGCAG TGATCCGTTT GCCGCCATCG AAACTGTTAT 1800
TTCATGGGAT GCTTTTGCAG CAAGTATTAC TGAGGCAGAA AAACTGGCGC AACCCGAAGA CTTTGATTTT TTACCACGAA TTGGCGAGAG CTATGCAACT 1900
TTACGCCGTT ACGCGCCAGA ACTTCTTGCC ATACTTAAAT TGCGTGCTGC CCCAGCAGCA AAAGATATGC TTGCCGCTGT AGAGTTGCTC CGCAGCATGA 2000
ATGTTGATAA TACACGAAAA ATCCCCTCTA ATGCTCCAAT AGCGTTTATC AAAAAACGGT GGGCAAGACT AGTCTTTACC GATGATGGTA TTGATCGCCG 2100
CTATTACGAA ATATGTGTGT TATCTGAACT TAAAAACTCG CTACGGGCTG GGGATCTCTG GGTACAAGGC TCTCGCCAAT TCAAAGACTT CGATGAGTAT 2200
TTAGTGACTG CTGATAAATT TAATCAGCTA AAACAGTCCA ATGAGTTACC TCTAACCATT ACTACTGATT GTGATCTATA TTTGCAAAGT CGCCTTTCAC 2300
TATTGGAGCA GAAATTAGCA ATCATTAATC GCATGGCAGC GACCAACGAT TTGCCTGATG CGATGATCAA TCAATCTGGT CTAAAAATAA CACCTCTCGA 2400
TGCCGTGGCT CCTGATACAG CCCAAACTTT AATTGACCAA ACAGCAATGC TGTTACCACA TATCAAGATC ACCGAATTAT TAATGGAGGT CGATGAATGG 2500
ACAGGCTTTA CTCGACACTT CACTCATTTG AAAACGGATG ACACTGCGAA GGATAAAGCG TTATTGCTCA CGACCATACT GGCTGATGCA ATTAATTTAG 2600
GGCTGACGAA AATGGCCGAA TCATGTCCTG GTACAACTTA TGCCAAACTC TCATGGCTAC AGGCTTGGCA TATCCGTGAT GAAACTTATT CAACGGCATT 2700
GGCCGAATTG GTGAATGCTC AATTGAAACA ACCTTTCGCT GAAAACTGGG GAGATGGCAC TACCTCCTCA TCAGATGGCC AACGCTTCCG CGCAGGTGGC 2800
AGAGCTGAAA GTACAGGACA TATCAATCCA AAATATGGCG CAGAGCCTGG AAGGTTATTT TATACACACA TTTCTGATCA ATACGCACCA TTTAGCAGTA 2900
AGCTGATCAA TGTGGGCGTT CGTGATTCAA CCTATGTTCT TGATGGGCTG CTGTATCACG AGTCTGATTT ACGCATCGAG GAACACTACA CCGATACGGC 3000
TGGATTCACC GACCATGTTT TTGCACTCAT GCACATGCTA GGGTTTCGAT TTGCACCACG AATTCGTGAT CTGGGCGATA CGAAACTCTA TATTCCAAAG 3100
TCAGACATAG ACTATGCCGC ACTTAAACCC ATGATTGGCG GCACACTGAA TATCAAACAG ATTCGTACTC ATTGGGACGA TATTTTGCGT CTGGCCGCAT 3200
CAATCAAGCA AGGGACTGTC ACAGCGTCGC TAATGCTACG TAAACTCGGT AGTTATCCAC GACAGAATGG TTTGGCATTG GCATTACGAG AGCTGGGGCG 3300
TATTGAGCGC ACACTGTTTA TCTTGGATTG GTTGCAAAGC GTAGAACTAC GCCGTCGGGT TCAAGCTGGA TTAAATAAAG GTGAAGCCCG TAATGCATTA 3400
GCGCGCGCCG TTTTCTTTTA TCGATTGGGT GAGATTCGAG ATCGAAGCTT TGAGCAACAG CGTTATCGAG CCAGTGGCTT GAATCTAGTG ACCGCCGCCA 3500
TTGTATTGTG GAACACGGTT TATTTAGAGA GAGCGACTAA CGCCCTACGA GGGCATGGTC GCACAGTCGA TGATACCTTG CTGCAATATC TGTCACCGCT 3600
GGGGTGGGAG CACATCAATT TAACTGGGGA TTATCTATGG CGAAGCAAAG CCAAGATAGG TGGTGGAAAA TTTAGGCCAT TGCGCGCAAT TGAAAAACCT 3700
TAGCGTGCTA TATTTTCCGT TTCCTGAGAC GACCCC
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnpR |
TnAcsp1 |
34-648 |
Accessory Gene |
Resolvase |
- |
| tnpA |
TnAcsp1 |
737-3703 |
Transposase |
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
TnAcsp1 |
615 |
34-648 |
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| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
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VQLGQNAAIY CRVSTNDQSC ERQEYDLRAY ANRCGYDVVG VWKETASGSK DERLQRKYLM TMAQSREIDA ILVTELTRWG RSTVDLVQSL QDLGHFGVSL
VAQTGLQFDL STSQGKLMAS VMSALAEFEG DLLRERVRSG VAAAQARGVV FGRRPGQRTK SDRLAPKVLE LVSAGHSYRQ VGRLVNLSKN TVLDIVKRSR
SENP
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
TnAcsp1 |
2967 |
737-3703 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
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MPRHSILSST ELGSLFEIPD DRAFMLQHYT LSDSDKSIVH QHRGASNKLG FAIQLCYMRY PGVILGINDE PFKPLLFMMA AQLSISVDCW NDYGQREQTR
REHIAELKKV FGFKLFTLSD YRQSVNMMVD LSLQTDKGLI LATTLVENLR QKSVLLPAIN AIDSICAEAI TSANRIIYTA LTSSLSETHR QNIDALLNRK
EGSKLTILGW LRQSPAKPNS KYMLEHIERL KCLQAIDLPE DIGKHVHQNR LLKIAREGGQ MTPADLARFE SQRRYATLVA IVVESMATIT DEIIDLHDRI
IGKLFAIAKN KHQQQFQSSG KAINDKVRLY GLIGKALLDA KQNGSDPFAA IETVISWDAF AASITEAEKL AQPEDFDFLP RIGESYATLR RYAPELLAIL
KLRAAPAAKD MLAAVELLRS MNVDNTRKIP SNAPIAFIKK RWARLVFTDD GIDRRYYEIC VLSELKNSLR AGDLWVQGSR QFKDFDEYLV TADKFNQLKQ
SNELPLTITT DCDLYLQSRL SLLEQKLAII NRMAATNDLP DAMINQSGLK ITPLDAVAPD TAQTLIDQTA MLLPHIKITE LLMEVDEWTG FTRHFTHLKT
DDTAKDKALL LTTILADAIN LGLTKMAESC PGTTYAKLSW LQAWHIRDET YSTALAELVN AQLKQPFAEN WGDGTTSSSD GQRFRAGGRA ESTGHINPKY
GAEPGRLFYT HISDQYAPFS SKLINVGVRD STYVLDGLLY HESDLRIEEH YTDTAGFTDH VFALMHMLGF RFAPRIRDLG DTKLYIPKSD IDYAALKPMI
GGTLNIKQIR THWDDILRLA ASIKQGTVTA SLMLRKLGSY PRQNGLALAL RELGRIERTL FILDWLQSVE LRRRVQAGLN KGEARNALAR AVFFYRLGEI
RDRSFEQQRY RASGLNLVTA AIVLWNTVYL ERATNALRGH GRTVDDTLLQ YLSPLGWEHI NLTGDYLWRS KAKIGGGKFR PLRAIEKP
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