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Transposon
Name: Tn7017
Family: Tn402
Evidence of Transposition: no
 Host     

Host Organism:Achromobacter xylosoxidans subsp. denitrificans Molecular Source:plasmid pAX22
Place of Origin:Verona, Italy Date of Isolation:2014
Other Geographic Information:from a urine specimen of an inpatient at the Uni-versity Hospital of Verona 1988

 Map     



 Terminal Inverted Repeats (IR)     


 Sequence     
DNA SequenceLength  9329 
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAGTT GATTGGGCGT AATGGCTGTT GTGCAGCCAG CTCCTGACAG TTCAATATCA GAAGTGATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGAG CATGGCGACG GACACCCCAC GGATTCCAGA ACAAGGCGTG GCCACTCTGC CTGATGAGGC 200
TTGGGAGCGT GCGCGCCGTC GTGCGGAGAT CATCAGTCCG TTGGCGCAGT CGGAGACGGT CGGGCACGAA GCGGCCGATA TGGCGGCTCA GGCGCTGGGC 300
TTGTCTCGGC GCCAGGTATA CGTTCTGATC CGGCGTGCCC GGCAAGGCAG CGGCCTCGTG ACGGATCTGG TGCCCGGCCA GTCCGGTGGA GGTAAAGGTA 400
AGGGGCGCTT GCCGGAACCG GTCGAGCGCG TCATCCACGA GCTACTGCAA AAGCGGTTCC TGACCAAGCA GAAGCGCAGC CTAGCGGCCT TTCACCGCGA 500
AGTCACTCAG GTGTGCAAGG CTCAAAAACT GCGAGTGCCG GCGCGCAATA CCGTGGCCTT ACGGATCGCT AGCCTTGACC CGCGCAAGGT CATCCGCCGG 600
CGGGAAGGCC AGGATGCCGC TCGTGACCTA CAAGGTGTGG GCGGCGAGCC TCCTGCCGTG ACCGCGCCGC TGGAGCAGGT GCAGATAGAC CATACGGTCA 700
TCGACCTGAT CGTGGTCGAT GACCGCGACC GGCAACCTAT TGGCCGCCCG TACCTGACCC TCGCCATCGA CGTGTTCACC CGCTGCGTGC TCGGCATGGT 800
CGTCACGCTG GAAGCGCCGT CTGCCGTTTC GGTTGGCCTG TGCCTCGTGC ATGTCGCCTG CGACAAGCGC CCTTGGCTGG AAGGACTGAA CGTGGAAATG 900
GATTGGCAGA TGAGCGGCAA GCCCTTGCTG CTCTACCTAG ACAACGCGGC CGAGTTCAAG AGCGAGGCCC TGCGCCGGGG TTGCGAGCAG CATGGCATCC 1000
GGCTGGACTA TCGCCCGCTG GGACAGCCGC ACTATGGCGG CATCGTGGAA CGGATCATCG GCACGGCGAT GCAGATGATT CACGACGAAC TGCCGGGAAC 1100
GACCTTCTCC AACCCTGACC AGCGCGGCGA CTACGATTCC GAAAACAAGG CCGCCCTGAC GCTGCGCGAG CTAGAGCGCT GGCTCACATT GGCGGTCGGC 1200
ACCTACCACG GTTCGGTGCA CAACGGCCTG CTCCAACCGC CGGCCGCGCG CTGGGCCGAG GCCGTGGCGC GTGTCGGCGT ACCGGCCGTC GTCACACGCG 1300
CTACTTCGTT CCTGGTCGAT TTTCTGCCGA TCCTCCGGCG CACGCTGACC CGCACCGGCT TTGTCATCGA CCACATCCAC TACTACGCCG ATGCGCTCAA 1400
GCCGTGGATT GCGCGGCGTG AACGCTGGCC GTCCTTTCTG ATCCGGCGCG ATCCGCGCGA CATCAGCCGT ATCTGGGTCC TGGAACCGGA GGGACAGCAT 1500
TACCTGGAAA TTCCCTACCG TACCTTGTCG CATCCGGCTG TCACCCTCTG GGAACAACGG CAGGCGCTGG CGAAACTGCG GCAGCAAGGG CGCGAACAGG 1600
TGGATGAGTC GGCGCTGTTC CGCATGATCG GCCAGATGCG TGAGATTGTG ACCAGCGCGC AGAAGGCCAC ACGCAAGGCG CGGCGTGACG CGGATCGCCG 1700
CCAGCACCTC AAGACATCAG CTCGGCCGGA CAAGCCCGTT CCGCCGGATA CGGATATTGC CGACCCGCAG GCAGACAACT TGCCACCCGC CAAACCGTTC 1800
GACCAGATTG AGGAGTGGTA GCCGTGGACG AATATCCCAT CATCGACCTG TCCCACCTGC TGCCGGCGGC CCAGGGCTTG GCCCGTCTTC CGGCGGACGA 1900
GCGCATCCAG CGCCTTCGCG CCGACCGCTG GATCGGCTAT CCGCGCGCAG TCGAGGCGCT GAACCGGCTG GAAGCCCTTT ATGCGTGGCC AAACAAGCAA 2000
CGCATGCCCA ACCTGCTGCT GGTTGGCCCG ACCAACAATG GCAAGTCGAT GATCGTCGAG AAGTTCCGCC GCACCCACCC GGCCAGCTCC GACGCCGACC 2100
AGGAGCACAT CCCGGTGTTG GTCGTGCAGA TGCCGTCCGA GCCGTCCGTG ATCCGCTTCT ACGTCGCGCT GCTCGCCGCG ATGGGCGCGC CGCTGCGCCC 2200
ACGCCCACGG TTGCCGGAAA TGGAGCAACT GGCTCTGGCA CTGCTGCGCA AGGTCGGCGT GCGCATGCTG GTGATCGACG AGCTGCACAA CGTGCTGGCC 2300
GGCAACAGCG TCAACCGCCG GGAATTCCTC AACCTGCTGC GCTTCCTCGG CAACGAACTG CGCATCCCGT TGGTTGGGGT AGGCACGCGC GACGCCTACC 2400
TAGCCATCCG CTCCGATGAC CAGTTGGAAA ATCGCTTCGA GCCGATGATG CTGCCGGTAT GGGAGGCCAA CGACGATTGC TGCTCACTGC TGGCCAGCTT 2500
CGCCGCTTCG CTCCCGCTGC GCCGGCCTTC CCCAATTGCC ACGCTGGACA TGGCTCGCTA CCTGCTCACA CGCAGCGAGG GCACCATAGG GGAACTGGCG 2600
CACTTGCTGA TGGCGGCGGC CATCGTCGCC GTGGAGAGCG GCGAGGAAGC GATCAACCAT CGCACACTCA GCATATCGAC AACCTCTCGC GCAACCAAGA 2700
CATCGCGGTC GGACTGCAAG TGATCTTGAA GCCACGGGCC CGTCCCACCC CGACATGGAC CTCGATGCCC GAACGGACGT TAGATTTCGA GTTCTAGGCG 2800
TTCTGCGATG AAGGTTGGAT CCCAGCCGGG ATTGAAAGTG TCGACGTGGG TGAATCCGAG CCGCTCGTAT AGGCCACGCA GGTTCGGGTG GCAGTCGAGC 2900
CGCAGCTTGG CGCACCCCTG CGTTCGCGCG GCATGGCGGC AAGCCTCGAT CAGCGCGGAG CTGACACCCC GGCCCGCATG TGTCCGTCGC ACCGCGAGCT 3000
TGTGCAGATA TGCGGCCTCC CCCTTGAGGG CGTCGGGCCA GAACTCGGGA TCCTCGGCCG ACAAGGTGCA ACAGCCGACG ATGCCGTCGC TGCAACTCGC 3100
GACTAGGAGC TCGGATCTCA GGACGAAGGT CTCCGCGAAT GTCCGGTCGA TCCGCGCGAC GTCCCAGGCG GGCGTTCCCT TGGCGGACAT CCACGCCGCA 3200
GCGTCGTGCA TCAGCCGCAC AACCTCGTCG ATATCACCCG AGCAGGCGAC CCGAACGTTC GGAGGCTCCT CGCTGTCCAT TCGCTCCCCT GGCGCGGTAT 3300
GAACCGCCGC CTCATAGTGC AGTTTGATCC TGACGAGCCC AGCATGTCTG CGCCCACCTT CGCGGAACCT GACCAGGGTC CGCTAGCGGG CGGCCGGAAG 3400
GTGAATGCTA GGCATGATCT AACCCTCGGT CTCTGGCGTC GCGACTGCGA AATTTCGCGA GGGTTTCCGA GAAGGTGATT GCGCTTCGCA GATCTCCAGG 3500
CGCGTGGGTG CGGACGTAGT CAGCGCCATT GCCGATCGCG TGAAGTTCCG CCGCAAGGCT CGCTGGACCC AGATCCTTTA CAGGAAGGCC AACGGTGGCG 3600
CCCAAGAAGG ATTTCCGCGA CACCGAGACC AATAGCGGAA GCCCCAACGC CGACTTCAGC TTTTGAAGGT TCGACAGCAC GTGCAGCGAT GTTTCCGGTG 3700
CGGGGCTCAA GAAAAATCCC ATCCCCGGAT CGAGGATGAG CCGGTCGGCA GCGACCCCGC TCCGTCGCAA GGCGGAAACC CGCGCCTCGA AGAACCGCAC 3800
AATCTCGTCG AGCGCGTCTT CGGGTCGAAG GTGACCGGTG CGGGTGGCGA TGCCATCCCG CTGCGCTGAG TGCATAACCA CCAGCCTGCA GTCCGCCTCA 3900
GCAATATCGG GATAGAGCGC AGGGTCAGGA AATCCTTGGA TATCGTTCAG GTAGCCCACG CCGCGCTTGA GCGCATAGCG CTGGGTTTCC GGTTGGAAGC 4000
TGTCGATTGA AACACGGTGC ATCTGATCGG ACAGGGCGTC TAAGAGCGGC GCAATACGTC TGATCTCATC GGCCGGCGAT ACAGGCCTCG CGTCCGGATG 4100
GCTGGCGGCC GGTCCGACAT CCACGACGTC TGATCCGACT CGCAGCATTT CGATCGCCGC GGTGACAGCG CCGGCGGGGT CTAGCCGCCG GCTCTCATCG 4200
AAGAAGGAGT CCTCGGTGAG ATTCAGAATG CCGAACACCG TCACCATGGC GTCGGCCTCC GCAGCGACTT CCACGATGGG GATCGGGCGA GCAAAAAGGC 4300
AGCAATTATG AGCCCCATAC CTACAAAGCC CCACGCATCA AGCTTTTGCC CATGAAGCAA CCAGGCAATG GCTGTAATTA TGACGACGCC GAGTCCCGAC 4400
CAGACTGCAT AAGCAACACC GACAGGGATG GATTTCAGAA CCAGAGAAAG AAAATAAAAT GCGATGCCAT AACCGATTAT GACAACGGCG GAAGGGGCAA 4500
GCTTAGTAAA GCCCTCGCTA GATTTTAATG CGGATGTTGC GATTACTTCG CCAACTATTG CGATAACAAG AAAAAGCCAG CCTTTCATGA TATATCTCCC 4600
AATTTGTGTA GGGCTTATTA TGCACGCTTA AAAATAATAA AAGCAGACTT GACCTGATAG TTTGGCTGTG AGCAATTATG TGCTTAGTGC ATCTAACGCT 4700
TGAGTTAGAC ATTATTTGCC GACTACCTTG GTGATCTCGC CTTTCACGTA GTGAACAAAT TCTTCCAACT GATCTGCGCG CGAGGCCAAG CGATCTTCTT 4800
CTTGTCCAAG ATAAGCCTGT CTAGCTTCAA GTATGACGGG CTGATACTGG GCCGGCAGGC GCTCCATTGC CCAGTCGGCA GCGACATCCT TCGGCGCGAT 4900
TCTGCCGGTT ACTGCGCTGT ACCAAATGCG GGACAACGTA AGCACTACAT TTCGCTCATC GCCAGCCCAG TCGGGCGGCG AGTTCCATAG CGTTAAGGTT 5000
TCATTTAGCG CCTCAAATAG ATCCTGTTCA GGAACCGGAT CAAAGAGTTC CTCCGCCGCT GGACCTACCA AGGCAACGCT ATGTTCTCTT GCTTTTGTCA 5100
GCAAGATAGC CAGATCAATG TCGATCGTGG CTGGCTCGAA GATACCTGCA AGAATGTCAT TGCGCTGCCA TTCTCCAAAT TGCAGTTCGC GCTTAGCTGG 5200
ATAACGCCAC GGAATGATGT CGTCGTGCAC AACAATGGTG ACTTCTACAG CGCGGAGAAT CTCGCTCTCT CCAGGGGAAG CCGAAGTTTC CAAAAGGTCG 5300
TTGATCAAAG CTCGCCGCGT TGTTTCATCA AGCCTTACGG TCACCGTAAC CAGCAAATCA ATATCACTGT GTGGCTTCAG GCCGCCATCC ACTGCGGAGC 5400
CGTACAAATG TACGGCCAGC AACGTCGGTT CGAGATGGCG CTCGATGACG CCAACTACCT CTGATAGTTG AGTCGATACT TCGGCGATCA CCGCTTCCCT 5500
CATGATGTTT AACGCCTGAG TTAAGCCGGA GCGCTTTGCG GCCGCGGCGT TGTGACAATT TACAGAACAA CTCCGCGGCC GCGAAGCGAT CTCGGCTTGA 5600
ACGAATTGTT AGACCGCGCT TAGAAGAACT CATCCAAGAT CCGGTAGTAC TCAATCTTAG CTATGTTCGG ATTTGGCTCT CCATACTCGA TGAAGAACTG 5700
GTTAGTGAGT TCTGGTCCAA ATACCGCGTC AATGTTTCTC GATGCAAGCG CCAGGTCTTG ATACTTATCG GCAAGCCCGA CCCGACCGCA GTCTATGAAG 5800
CCGACGAAGG CATTACCTTG GAAGATGAAG TTCTCGGGAC AGGCGTCGCC ATGTGTGACT ACCAGCTGCT CCGCTCCAGG CATTTGTATA AAAAGTTGCT 5900
CGTAAACATC CCGCGCCAGC ATGCCTTGCC TTGCGTGATC AAAGTCCTCC TCATCAACTA ACCCGGCTTC CAAACGGCCC GAAGCCAGCT TCAGTCGCAG 6000
GTGGAGCCTT TCGTCGAATG GGCAATCGTC AGGCGAGATC GAATGGAGGT CGCGTAACGC TCGTGCCATC TCTGCAACAA CAATAACTGG ATCTGCATCT 6100
GCGGCGTCAG CGGCATTGTG GCCAATCAAT GCTTTTGTCA ACAGGATGGT GACAGTTGAA GTCGAGACAT ATGAGATCAC TTCCGGTACG AGAGCTCGTG 6200
TTCTGAGCCA TCTAGTGCGC TGATGCTCTT GAAGAATTTC TTGAGCAGAA GATCCGGAGG CGTACTTTAG ATACGCGGTA TTGCGATCAG GAAATAGAAC 6300
TCGAATCACT CGAGCATCTG ACTGACCATA CTCAACTTCT TCAAAAGTGC ATTCATCCAA CAAGGGTGAA AGCAAATTCT TTAGTTCAGA TACTTCGTCG 6400
AGGGCGACTG TCATAGCGGT CTAACGTTTG ACATGAGGGG CGGCCAAGGG CGCCAGCCCT TGGACGTCCC CCTCGATGGA AGGGTTAGGC ATCACTGCGT 6500
GTTCGCTCGA ATGCCTGGCG TGTTTGAACC ATGTACACGG CTGGACCATC TGGGGTGGTT ACGGTACCTT GCCTCTCAAA CCCCGCTTTC TCGTAGCATC 6600
GGATCGCTCG CAAGTTGCTC GGCGACGGGT CCGTTTGGAT CTTGGTGACC TCGGGATCAT TGAACAGCAA CTCAACCAGT GCTCGAACCA GCTTGGTTCC 6700
CAAGCCTTTG CCCAGTTGTG ATGCATTCGC CAGTGACTGG TCTATTCCGC GTACTCCTGG ATCGGTTTCT TCTTCCCACC ATCCGTCCCC GCTTCCAAGA 6800
GCAACGTACG ACTGGGCATA CCCAATCGGC TCTCCATTCA GCATTGCAAT GTATGGAGTG ACGGACTCTT GCGCTAAAAC GCTTGGCAAG TACTGTTCCT 6900
GTACGTCAGC AAGTGTCGGG CGTGCTTCTT CTCCGCCCCA CCACTCGACG ATATGAGATC GATTTAGCCA CTCATAGAGC ATCGCAAGGT CATGCTCAGT 7000
CATGAGGCGC AGTGTGACGG AATCGTTGCT GTTGGTCACG ATGCTGTACT TTGTGATGCC TAACGCCTGA GTTGAGGGGC TTTTGCGGAG TAGGCGCAGC 7100
CTGCGTAGCA AAAGTCCCGC TCCAACGATT TGTTATGCCG CATCTGCTAC TCGGCGACTG AGCGATTTTT GTGTGCTTTG ACAACGTTCG CTGTGTGCTG 7200
GAGCAAGTCT AGACCGCCCG GTAGACCGTG CCCGGGAATG ACGACCTCTG CTTCCGGGTA GTGTTTTTGA ATCCGCTCAA CGGAGGTGGG CCATTCAGCC 7300
AGATCGGCAT CGGCCACGTT CCCCGCAGAC GTGCTTGACA ACTCATGAAC GGCACAACCA CCGTATAGCA CGTTCGCTGA CGGGACGTAT ACAACCAGAT 7400
TGTCGGTCGA ATGCGCAGCA CCAGGATAGA AGAGCTCTAC TGGACCGAAG CGCACTGCGT CCCCGCTCGA TGAGAGTCCT TCTAGAGAAT GCGTGGGAAT 7500
CTCGTTCCCC TCTGCCTCGG CTAGCCGGCG TGTCGACGGT GATGCGTACG TTGCCACCCC AGCCGCCCGA AGGACATCAA CGCCGCCGAC GCGGTCGTCA 7600
TGAAAGTGCG TGGAGACTGC ACGCGTTACG GGAAGTCCAA TTTGCTTTTC AATCTCCGCG AGAAGTGCCG CTGTGTTTTT CGCACCCCAC GCTGTATCAA 7700
TCAAAAGCAA CTCATCACCA TCACGGACAA TGAGACCATT GGACGGGTAG ACCGCGCCAT CAAACGACTG CGTTGCGATA TGCGACCAAA CACCATCGGC 7800
AATCTGGTAA AGTCGGACCT CTCCGACCGG AATTTCGTTG ACTGTCGGAT ACTCACCACT CGGCTCCCCG GAATGGGCTA ACGGACTTGC GACAGCCATG 7900
ACAGACGCGG TCATGTAGAC CAATAAACTA CTAATAACTT TTAACATCAA GACTCCATAG GGGTGGGTGC GGCATAACTT TGTTTTAGGG CGACTGCCCT 8000
GCTGCGTAAC ATCGTTGCTG CTCCATAACA TCAAACATCG ACCCACGGCG TAACGCGCTT GCTGCTTGGA TGCCCGAGGC ATAGACTGTA CAAAAAAACA 8100
GTCATAACAA GCCATGAAAA CCGCCACTGC GCCGTTACCA CCGCTGCGTT CGGTCAAGGT TCTGGACCAG TTGCGTGAGC GCATACGCTA CTTGCATTAC 8200
AGCTTACGAA CCGAACAGGC TTATGTCAAC TGGGTTCGTG CCTTCATCCG TTTCCACGGT GTGCGTCACC CGGCAACCTT GGGCAGCAGC GAAGTCGAGG 8300
CATTTCTGTC CTGGCTGGCG AACGAGCGCA AGGTTTCGGT CTCCACGCAT CGTCAGGCAT TGGCGGCCTT GCTGTTCTTC TACGGCAAGG TGCTGTGCAC 8400
GGATCTGCCC TGGCTTCAGG AGATCGGAAG ACCTCGGCCG TCGCGGCGCT TGCCGGTGGT GCTGACCCCG GATGAAGTGG TTCGCATCCT CGGTTTTCTG 8500
GAAGGCGAGC ATCGTTTGTT CGCCCAGCTT CTGTATGGAA CGGGCATGCG GATCAGTGAG GGTTTGCAAC TGCGGGTCAA GGATCTGGAT TTCGATCACG 8600
GCACGATCAT CGTGCGGGAG GGCAAGGGCT CCAAGGATCG GGCCTTGATG TTACCCGAGA GCTTGGCACC CAGCCTGCGC GAGCAGCTGT CGCGTGCACG 8700
GGCATGGTGG CTGAAGGACC AGGCCGAGGG CCGCAGCGGC GTTGCGCTTC CCGACGCCCT TGAGCGGAAG TATCCGCGCG CCGGGCATTC CTGGCCGTGG 8800
TTCTGGGTTT TTGCGCAGCA CACGCATTCG ACCGATCCAC GGAGCGGTGT CGTGCGTCGC CATCACATGT ATGACCAGAC CTTTCAGCGC GCCTTCAAAC 8900
GTGCCGTAGA ACAAGCAGGC ATCACGAAGC CCGCCACACC GCACACCCTC CGCCACTCGT TCGCGACGGC CTTGCTCCGC AGCGGTTACG ACATTCGAAC 9000
CGTGCAGGAT CTGCTCGGCC ATTCCGACGT CTCTACGACG ATGATTTACA CGCATGTGCT GAAAGTTGGC GGTGCCGGAG TGCGCTCACC GCTTGATGCG 9100
CTGCCGCCCC TCACTAGTGA GAGGTAGGGC AGCGCAAGTC AATCCTGGCG GATTCACTAC CCCTGCGCGA AGGCCATCGG TGCCGCATCG AACGGCCGGT 9200
TGCGGAAAGT CCTCCCTGCG TCCGCTGATG GCCGGCAGCA GCCCGTCGTT GCCTGATGGA TCCAACCCCT CCGCTGCTAT AGTGCAGTCG GCTTCTGACG 9300
TTCAGTGCAG CCGTCTTCTG AAAACGACA

 Recombination Sites     

Name Coordinates Gene Sequence
attC qacH_sul1 core 3380-3413 34 CCGCTAGCGG GCGGCCGGAA GGTGAATGCT AGGC
attC aphA15 core 5507-5614 108 GTTTAACGCC TGAGTTAAGC CGGAGCGCTT TGCGGCCGCG GCGTTGTGAC AATTTACAGA
ACAACTCCGC GGCCGCGAAG CGATCTCGGC TTGAACGAAT TGTTAGAC
attC AAC(6')-Ib core 6425-6490 66 CGTTTGACAT GAGGGGCGGC CAAGGGCGCC AGCCCTTGGA CGTCCCCCTC GATGGAAGGG
TTAGGC
attC bla VIM-1 core 7064-7138 75 CGCCTGAGTT GAGGGGCTTT TGCGGAGTAG GCGCAGCCTG CGTAGCAAAA GTCCCGCTCC
AACGATTTGT TATGC
attI 7978-8033 56 CTTTGTTTTA GGGCGACTGC CCTGCTGCGT AACATCGTTG CTGCTCCATA ACATCA

 ORFs     
ORF Summary
Gene Name Associated TE Coordinates Class Sub Class Orientation
tniA Tn7017 142-1821 Transposase   +
tniB_p Tn7017 1824-2723 Accessory Gene   +
GNAT_fam Tn7107 2780-3280 Passenger Gene Antibiotic Resistance -
sul1 (ARO:3000410) Tn7017 3408-4247 Passenger Gene Antibiotic Resistance -
qacEdelta1 (ARO:3005010) Tn7017 4241-4588 Passenger Gene Antibiotic Resistance -
aadA (ARO:3002601) Tn7017 4712-5503 Passenger Gene Antibiotic Resistance -
aphA15 (ARO:3004675) Tn7017 5620-6414 Passenger Gene Antibiotic Resistance -
AAC(6')-Ib10 (ARO:3002581) Tn7017 6485-7039 Passenger Gene Antibiotic Resistance -
bla VIM-1 (ARO:3002271) Tn7017 7147-7947 Passenger Gene Antibiotic Resistance -
intI1 Tn7017 8114-9127 Integron Integrase Class 1 +

ORF Details
Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniA TniA Tn7017 1680 142-1821 +
Class:   Transposase
Transpoase Chemistry:   DDE
Comment:   can be extended upstream by 12 amino acids| identical to tniA (Tn1721 and In2)| 25% amino acid sequence identity to TnsB from Tn7
Protein Sequence:  
 MATDTPRIPE QGVATLPDEA WERARRRAEI ISPLAQSETV GHEAADMAAQ ALGLSRRQVY VLIRRARQGS GLVTDLVPGQ SGGGKGKGRL PEPVERVIHE
LLQKRFLTKQ KRSLAAFHRE VTQVCKAQKL RVPARNTVAL RIASLDPRKV IRRREGQDAA RDLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDDRDRQPI
GRPYLTLAID VFTRCVLGMV VTLEAPSAVS VGLCLVHVAC DKRPWLEGLN VEMDWQMSGK PLLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WAEAVARVGV PAVVTRATSF LVDFLPILRR
TLTRTGFVID HIHYYADALK PWIARRERWP SFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALAKLR QQGREQVDES ALFRMIGQMR
EIVTSAQKAT RKARRDADRR QHLKTSARPD KPVPPDTDIA DPQADNLPPA KPFDQIEEW

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniB_p TniB_p Tn7017 900 1824-2723 +
Class:   Accessory Gene
Sequence Family:  ATP binding protein
Comment:   3' deletion| similar function to Tn7 tnsC and MuB
Protein Sequence:  
 VDEYPIIDLS HLLPAAQGLA RLPADERIQR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLVGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSPIAT LDMARYLLTR SEGTIGELAH LLMAAAIVAV ESGEEAINHR TLSISTTSRA TKTSRSDCK

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
GNAT_fam GNAT_fam Tn7107 501 2780-3280 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  Acetyltransf_1 (Pfam:PF00583)
Comment:   putative acetyltransferase
Protein Sequence:  
 MDSEEPPNVR VACSGDIDEV VRLMHDAAAW MSAKGTPAWD VARIDRTFAE TFVLRSELLV ASCSDGIVGC CTLSAEDPEF WPDALKGEAA YLHKLAVRRT
HAGRGVSSAL IEACRHAART QGCAKLRLDC HPNLRGLYER LGFTHVDTFN PGWDPTFIAE RLELEI

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
sul1 (ARO:3000410) Sul1 Tn7017 840 3408-4247 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target replacement (ARO:0001002)
Transpoase Chemistry:   dihydropteroate synthase
Target:   sulfonamide antibiotic (ARO:3000282)||sulfone antibiotic (ARO:3003401)
Sequence Family:  sulfonamide resistant sul (ARO:3004238)
Comment:   perfect match to reference sequence for ARO:3000410
Protein Sequence:  
 MVTVFGILNL TEDSFFDESR RLDPAGAVTA AIEMLRVGSD VVDVGPAASH PDARPVSPAD EIRRIAPLLD ALSDQMHRVS IDSFQPETQR YALKRGVGYL
NDIQGFPDPA LYPDIAEADC RLVVMHSAQR DGIATRTGHL RPEDALDEIV RFFEARVSAL RRSGVAADRL ILDPGMGFFL SPAPETSLHV LSNLQKLKSA
LGLPLLVSVS RKSFLGATVG LPVKDLGPAS LAAELHAIGN GADYVRTHAP GDLRSAITFS ETLAKFRSRD ARDRGLDHA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
qacEdelta1 (ARO:3005010) QacEdelta1 Tn7017 348 4241-4588 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic efflux (ARO:0010000)
Target:   acridine dye (ARO:3000054)||quaternary ammonium salts
Sequence Family:  major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002)
Comment:   subunit of the qac multidrug efflux pump||perfect match to reference sequence for ARO:3005010 (bitscore:219)
Protein Sequence:  
 MKGWLFLVIA IVGEVIATSA LKSSEGFTKL APSAVVIIGY GIAFYFLSLV LKSIPVGVAY AVWSGLGVVI ITAIAWLLHG QKLDAWGFVG MGLIIAAFLL
ARSPSWKSLR RPTPW

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
aadA (ARO:3002601) AadA Tn7017 792 4712-5503 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Transpoase Chemistry:   aminoglycoside nucleotidyltransferase
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  ANT(3'') (ARO:3004275)
Comment:   perfect match to reference sequence for ARO:3002601||Synonyms: aadA1-pm, aadA, aadA1, aad(3'')(9)
Protein Sequence:  
 MREAVIAEVS TQLSEVVGVI ERHLEPTLLA VHLYGSAVDG GLKPHSDIDL LVTVTVRLDE TTRRALINDL LETSASPGES EILRAVEVTI VVHDDIIPWR
YPAKRELQFG EWQRNDILAG IFEPATIDID LAILLTKARE HSVALVGPAA EELFDPVPEQ DLFEALNETL TLWNSPPDWA GDERNVVLTL SRIWYSAVTG
RIAPKDVAAD WAMERLPAQY QPVILEARQA YLGQEEDRLA SRADQLEEFV HYVKGEITKV VGK

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
aphA15 (ARO:3004675) AphA15 Tn7017 795 5620-6414 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  APH(3') (ARO:3000126)
Comment:   strict match to reference sequence for ARO:3004675 (bitscore: 543)
Protein Sequence:  
 MTVALDEVSE LKNLLSPLLD ECTFEEVEYG QSDARVIRVL FPDRNTAYLK YASGSSAQEI LQEHQRTRWL RTRALVPEVI SYVSTSTVTI LLTKALIGHN
AADAADADPV IVVAEMARAL RDLHSISPDD CPFDERLHLR LKLASGRLEA GLVDEEDFDH ARQGMLARDV YEQLFIQMPG AEQLVVTHGD ACPENFIFQG
NAFVGFIDCG RVGLADKYQD LALASRNIDA VFGPELTNQF FIEYGEPNPN IAKIEYYRIL DEFF

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
AAC(6')-Ib10 (ARO:3002581) AAC(6')-Ib10 Tn7017 555 6485-7039 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Transpoase Chemistry:   aminoglycoside acetyltransferase
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  AAC(6') (ARO:3000345)
Comment:   strict match to reference sequence for ARO:3002581 (bitscore: 377)
Protein Sequence:  
 MTNSNDSVTL RLMTEHDLAM LYEWLNRSHI VEWWGGEEAR PTLADVQEQY LPSVLAQESV TPYIAMLNGE PIGYAQSYVA LGSGDGWWEE ETDPGVRGID
QSLANASQLG KGLGTKLVRA LVELLFNDPE VTKIQTDPSP SNLRAIRCYE KAGFERQGTV TTPDGPAVYM VQTRQAFERT RSDA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
bla VIM-1 (ARO:3002271) Bla VIM-1 Tn7017 801 7147-7947 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Target:   carbapenem (ARO:0000020)||cephamycin (ARO:0000044)||penam (ARO:3000008)||penem (ARO:3003706)||cephalosporin (ARO:0000032)
Sequence Family:  VIM beta-lactamase (ARO:3000021)
Comment:   strict match to reference sequence for ARO:3002271 (bitscore: 536)
Protein Sequence:  
 MLKVISSLLV YMTASVMAVA SPLAHSGEPS GEYPTVNEIP VGEVRLYQIA DGVWSHIATQ SFDGAVYPSN GLIVRDGDEL LLIDTAWGAK NTAALLAEIE
KQIGLPVTRA VSTHFHDDRV GGVDVLRAAG VATYASPSTR RLAEAEGNEI PTHSLEGLSS SGDAVRFGPV ELFYPGAAHS TDNLVVYVPS ANVLYGGCAV
HELSSTSAGN VADADLAEWP TSVERIQKHY PEAEVVIPGH GLPGGLDLLQ HTANVVKAHK NRSVAE

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
intI1 IntI1 Tn7017 1014 8114-9127 +
Class:   Integron Integrase
Sub Class:   Class 1
Transpoase Chemistry:   Tyrosine
Sequence Family:  Class 1 Integron Tyrosine Integrase
Protein Sequence:  
 MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVNW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGSKDRALML PESLAPSLRE QLSRARAWWL
KDQAEGRSGV ALPDALERKY PRAGHSWPWF WVFAQHTHST DPRSGVVRRH HMYDQTFQRA FKRAVEQAGI TKPATPHTLR HSFATALLRS GYDIRTVQDL
LGHSDVSTTM IYTHVLKVGG AGVRSPLDAL PPLTSER

 Internal Repeat Elements     

Name Associated Mobile Element Coordinates Sequence (Top Strand)
repeat t1 Tn7017 9-27 TCAGAAGACG ACTGCACCA
repeat t2 Tn7017 49-67 AACACGTCGG TCGAGGACT
repeat t3 Tn7017 78-97 TCAGAAGTGA TCTGCACCAA
repeat t4 Tn7017 110-128 TCAATACTCG TGTGCACCA
repeat i4 Tn7017 9210-9228 AGGAGGGACG CAGGCGACT
repeat i3 Tn7017 9238-9256 CGTCGGGCAG CAACGGACT
repeat i2 Tn7017 9280-9298 ATCACGTCAG CCGAAGACT
IRi Tn7017 9297-9329 CTGCAAGTCA CGTCGGCAGA AGACTTTTGC TGT

 References     

Di Pilato V, Pollini S, Rossolini GM. Characterization of plasmid pAX22, encoding VIM-1 metallo-β-lactamase, reveals a new putative mechanism of In70 integron mobilization. J Antimicrob Chemother. 2014 Jan;69(1):67-71. doi: 10.1093/jac/dkt311. Epub 2013 Aug 8. PubMed ID: 23928025