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Recombination Sites | |
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Internal Transposable Elements | |
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Internal Repeats | |
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Name: Tn6136 |
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Family: Tn3 Group: Tn163 |
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Evidence of Transposition: no |
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Host |
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Host Organism: | Sphingobium japonicum | Molecular Source: | plasmid pIP1202 |
Place of Origin: | Japan | Date of Isolation: | 2011 |
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Map |
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Terminal Inverted Repeats (IR) |
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IRL (Length: 45 bp) | | GGGGTGACTGCACGAAAGTGACTTATCTGCACGCTAAGAGCGAAC |
IRR (Length: 45 bp) | | GGGGTGACTACACGAAAGTGACGTATCTGCACGCTAAGGGCGAAC |
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Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTGACTG CACGAAAGTG ACTTATCTGC ACGCTAAGAG CGAACGGACC GGGAACGCTG GGACTTTGTG TTCTTCTCCG TGGCTTCGAG GGCTTTGTAG 100
AGGGCGGTTT TGCCGATCTT GAGGCGCGCG GCGGCCTCGC GAACTGTGAG GCCGGAAGCG ATATGTTCGC GCGCCTTGCG GAGCTTGTCA GGTGTGACCA 200
CTGGCCGCCG CCCACCGGGG CGACCTCGCT CGCGAGCGGC CTTGAGGCCT GCATGGGTGC GCTCCCGGAT CAGATCGCGC TCAAACTGGG CAAGCGAGCC 300
GAAGATGTTG AACACCAGCA TCCCGCCCGA AGTGGTGGTG TCGATGTTCT CGGTGAGCGA GCGGAACCCG ATACCTCGCG TCGCTAGCTC GCCGACCTTC 400
TCAATCAGAT GGCTCATCGA GCGCCCAAGA CGGTCGAGTT TCCAAACCAC CAGCGTGTCG CCGCTGCGCA GATAGGCGAG CGCCTCGGCC AGGCCGGGCC 500
GATCGGCTTT TGCACCAGAT GCGTGATCGT CGAATATCCG GTCGCACCCG GCCGCGTTCA GCGCGTCGAG CTGGAGTGAG AGCTTCTGGT CTGCCGTCGA 600
GACGCGCGCA TAGCCGATCA ACGCCACATG CAGCCCAATC CTGTCCGTTT TCCCATCATT ATCTGATCTT GTCCGAATCG CCGTTATAGG TCCAGAGTTA 700
ACGGACATAT TCCTGCTGGC CGCCAGAGGA CCGTCTGACG GACAGGCACA GCGAAGGAGA TGATGCTTGG CGAGGCGGCG ACTGGTGAGC CTGGAAATCT 800
GGGCGGGGCA TTATGACGCG CCGCTCGATG AGCGCGAGAT TGCACGTCAC TATACGCTGA CCAGTGACGA CCTGGAAATT GTCGGTCGCC GTCGCGGCGA 900
TGCCACCCGG CTCGGTTTCG CGATGCTCCT GCTCACCATG AGATGGCCTG GCCGTGCGCT GGAAGCGGGC GAAGTCCCGC CCGCCCCTGT GCTCGGTTAT 1000
GTGGCCCGCC AACTCGGCGT CGCGCCCGAC GCCTTTGCGG ACTATGCTCG TCGGGATCAG ACCCGCCGCG AGCATCTTGT CGAAATCCGA CGATCGCACG 1100
GGTTCAGGAT TTTCGATCGC GACGCATTCC GCGAAGTCGT CGCCTTCTCG ATCCCTATCG CACAGACCAT CATCCACCCC GGCCAGATGG CAGGCGTCAT 1200
CGTCGACGAA CTCCGGCGTC GGCAGATCCT CCTACCTTCT TCTTCGATTC TAGAAGCGGT GCTGCGGCGG GCTCGCCAGC AAGCCGAACA GCTTACCTAT 1300
GAAGTGCTCA CAAACGGTCT GCGGCCCGAC ACCCTTCAGG ACCTGGACGA TTTGCTGGCC CGACGAACGG GGCAAGCCGC GACATGGCTA TCCTGGCTTC 1400
GCAATGCGTC ACAATCGCCG GCAGCGCGCA ACATTCTGCG CCTGATCGAA CGGCTCGCCT ATGTCCGCGC ACTGGGCCTC GATCGCGGGC GGGCTGACAT 1500
GATTCCGGCT TCGACTTTTG ACAGGCTCGC GGACGAGGGC AGCCGCATCA CGCCCCAGCA TCTTGGCGAA CTCAATGCCC TGCGCCGACA TGCGACGCTG 1600
GCGGCAACCG GCATCCGCCT TGAGGAAGAC CTGACCGACG CAACCCTGAC GATGTTCGAC AAGCTGTTGG GCAGCATGGT GCGCCGCGCC GAAAACCGGA 1700
CCCGCGACAA AGCCCTCAAG ACGGTGCGCG AGCTGCAGGG TCATCTCCGG ACGCTCACAG GGTCTTGCCG CATCCTCATC GACGCGCGAA CCAACGGCGT 1800
GGACTCGCTG GCGCAGATCG AGGCGCTGGA CTGGCAGCGC TTCGCCGTGT CGGTCGAGCA AGCCGAAGTG CTCAGCCGAC CGGAAACCGT CGATCGCACC 1900
GCTGAATTGA TTGAGCGGCA TCGCACGGTA AAGCTCTTTG CCGGCGCCTT TCTCAACACC TTCGAATTTC GCGGTGCCGG TGCGGTGCAG GGACTTCTGT 2000
CGGCGCTGGC CATTATCGCG GAGCTATACC GGACCGGCAA ACGGCGCTTG CCTGATCGCG TGCCGCTGCG CTTTGTGCCG TCCGCATGGC GGCCGTTCAT 2100
CCTGCGCGAT GGCATCGTCG ACCGCGCCGC CTATGAACTA TGCGCTCTGT CGCAGCTACG TGAGCGGCTG CGAGCGGGAG ACATATGGGT CGCGGGCAGC 2200
CGCCAGTTTC GCGATTTCGA CAGCTACCTC ATCCCACCGG CCACCTATGC GGCGCTTCGC GAGAAGGGAC CACTGCCGCT CGCCATCGAA ACGGATTTCG 2300
AGCGCCATAT TGAGGAAAGG CGCACCAGGC TCGACACGGC CATCGAACAG GTAACGGTCC TCGCGCGACA AGGCGAGCTG CCCCAGGTCA GGCTTGACGA 2400
AAACGGCCTC ATCATCTCGC CGCTGAAGGC GGCAACGCCG CCCGCTACCG AAATTGCCCG TCGCGCAGCC TATGATCGCC TGCCACGGGT GAAGATCACC 2500
GACCTGCTGC TTGAGGTCGA TGCTTGGACC GGGTTCAGCG AATGCTTCAT CCACCGACGT TCGGGCCGGG AGGCCGACGA TCGCAATGCG CTTCTCACCG 2600
TCATCCTCGC CGATGGCATC AATCTCGGCC TCACGCGCAT GGCGGAAACC TGCCGGGGCG CAAGTCTGCG CCAGCTTGCT CACTTGCATG ACTGGCACAT 2700
CAGCGAGGCC GCCTATGGCG AGGCGCTGGG AAGGCTGATC AACGCCCATC GCACCATGCC GCTCGCCGCG CTGTGGGGAG ACGGCACCAC CTCGTCGAGC 2800
GACGGACAGC AGTTTCATGC CGGCGGTCGT GGGGCCGCGA TCGGTGACAT CAACGCGCGC AGCGGCAACG AACCGGGCGT CGCCTTCTAC ACCCATGTCT 2900
CGGATCGATA TGATCCCTTT GCGAGCCGGG TGATCGCGGC GACCGCAGGC GAAGCGCCCT ATGTCCTGGA TGGCTTGCTG TATCACCAGA CCGGCATGAC 3000
GATCGAGGAG CACTACACCG ATACGGGTGG AGCATCGGAC CATGTGTTCG GTCTCATGCC CTTCTTCGGC TACCGCTTCG CGCCGCGCTT GCGCGACATT 3100
AAGGAGCGTC GTTTGCACCT CCTTCCCGGC CAGGAATCCG GCCCCTTGCT CGCCGGCATG ACGACCGAAC CGATCGCATT GGGCCATGTC GCGGCGCATT 3200
GGGACGAACT GCTACGGTTC GCCACGTCGA TCCGCACCGG CACCGTCACT GCTTCGGCGA TGCTGCGCCG GCTATCCGGC TATCCGCGAC AGAACGGACT 3300
GGCCCTCGCG CTGCGCGAGC TTGGCCGCCT CGAACGCTCG ATCTTCATGC TCGACTGGCT GCGCGACATC GACCTGCGCC GGCGCACCCA GGCGGGCCTC 3400
AACAAGGGCG AAGCCCGCAA CGCGCTCGCC CGCGCGCTCT TCTTTAACCA GCTCGGCGAA TTGCGTGATC GGCGGTTCGA AAACCAGACT TATCGCGCCT 3500
CCGGCCTCAA CCTGCTCGTC GCCGCCATCA TCCTGTGGAA CACTCGCTAT CTCGAAATGG CGCTGGCTGA CATCGGCACG CCCGACGAGA TCGCGCGCCA 3600
CGTCGCGCCA TTGGGCTGGG AGCATATCTC GCTGACGGGG GACTATAGCT GGAATGTCGA AGATCGGCCC GATCCGGATG CCTTGCGGCC GCTGCGCGCC 3700
GTCAGCTCCC TGCTCGCCGC GTGAAGTTCG CTATCCGTTC GCCCTTAGCG TGCAGATACG TCACTTTCGT GTAGTCACCC C
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ORFs |
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Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
tnpR |
Tn6136 |
34-627 |
Accessory Gene |
Resolvase |
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tnpA |
Tn6136 |
767-3724 |
Transposase |
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+ |
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpR |
TnpR |
Tn6136 |
594 |
34-627 |
- |
Class: | Accessory Gene |
Sub Class: | Resolvase |
Function: | recombinaseactivity (GO:0000150) |
Transpoase Chemistry: | Serine |
Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
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MALIGYARVS TADQKLSLQL DALNAAGCDR IFDDHASGAK ADRPGLAEAL AYLRSGDTLV VWKLDRLGRS MSHLIEKVGE LATRGIGFRS LTENIDTTTS GGMLVFNIFG SLAQFERDLI RERTHAGLKA ARERGRPGGR RPVVTPDKLR KAREHIASGL TVREAAARLK IGKTALYKAL EATEKNTKSQ RSRSVRS
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpA |
TnpA |
Tn6136 |
2958 |
767-3724 |
+ |
Class: | Transposase |
Function: | transposase activity (GO:0004803) |
Transpoase Chemistry: | DDE |
Comment: | uniProt accession: D4YY99 (D4YY99_SPHJU) |
Protein Sequence:
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MARRRLVSLE IWAGHYDAPL DEREIARHYT LTSDDLEIVG RRRGDATRLG FAMLLLTMRW PGRALEAGEV PPAPVLGYVA RQLGVAPDAF ADYARRDQTR REHLVEIRRS HGFRIFDRDA FREVVAFSIP IAQTIIHPGQ MAGVIVDELR RRQILLPSSS ILEAVLRRAR QQAEQLTYEV LTNGLRPDTL QDLDDLLARR TGQAATWLSW LRNASQSPAA RNILRLIERL AYVRALGLDR GRADMIPAST FDRLADEGSR ITPQHLGELN ALRRHATLAA TGIRLEEDLT DATLTMFDKL LGSMVRRAEN RTRDKALKTV RELQGHLRTL TGSCRILIDA RTNGVDSLAQ IEALDWQRFA VSVEQAEVLS RPETVDRTAE LIERHRTVKL FAGAFLNTFE FRGAGAVQGL LSALAIIAEL YRTGKRRLPD RVPLRFVPSA WRPFILRDGI VDRAAYELCA LSQLRERLRA GDIWVAGSRQ FRDFDSYLIP PATYAALREK GPLPLAIETD FERHIEERRT RLDTAIEQVT VLARQGELPQ VRLDENGLII SPLKAATPPA TEIARRAAYD RLPRVKITDL LLEVDAWTGF SECFIHRRSG READDRNALL TVILADGINL GLTRMAETCR GASLRQLAHL HDWHISEAAY GEALGRLINA HRTMPLAALW GDGTTSSSDG QQFHAGGRGA AIGDINARSG NEPGVAFYTH VSDRYDPFAS RVIAATAGEA PYVLDGLLYH QTGMTIEEHY TDTGGASDHV FGLMPFFGYR FAPRLRDIKE RRLHLLPGQE SGPLLAGMTT EPIALGHVAA HWDELLRFAT SIRTGTVTAS AMLRRLSGYP RQNGLALALR ELGRLERSIF MLDWLRDIDL RRRTQAGLNK GEARNALARA LFFNQLGELR DRRFENQTYR ASGLNLLVAA IILWNTRYLE MALADIGTPD EIARHVAPLG WEHISLTGDY SWNVEDRPDP DALRPLRAVS SLLAA
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References |
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Nagata Y, Natsui S, Endo R, Ohtsubo Y, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M. Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium. Enzyme Microb Technol. 2011 Dec 10;49(6-7):499-508. doi: 10.1016/j.enzmictec.2011.10.005. Epub 2011 Nov 7. PubMed ID: 22142724
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