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Internal Transposable Elements | |
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| Name: Tn5718 |
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| Family: Tn402 Group: Tn5053 |
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| Evidence of Transposition: Yes |
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| Host |
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| Host Organism: | Uncultured bacterium plasmid pSB102 | Molecular Source: | plasmid pSB102 |
| Place of Origin: | Braunschweig, Germany | Date of Isolation: | 2001 |
| | Other Geographic Information: | alfalfa bacterial rhizosphere community Federal Agricultural Research Center |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAATT GACGGGGCGT AACGCCAGAT GTGCAGGCGA CTCCTGACAA CGCAATATCA GAAGTCATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGTG AGCATGGCGT CAGACACATC ATTGATTGCC GAGCAAGGCG TGGCCACCCT GCCCGATGCG 200
GCTTGGGCGC AGGCCCGGCA ACGGGCGGAA ATCATCGGGC CGCTGGCAGC GCTTGATGTG GTCGGGCATG AAGCCGCCGA TGCCGCTGCT CACGCGCTTG 300
GCCTGTCCAG GCGGCAGGTG TATGTCCTAA TCCGCCGTGC CCGGCAAGGT GCTGGGCTTG TGACGGACCT GGCTCGCAGC CGATCCGGCG GCGGAAAAGG 400
CAAGGGACGC TTGCCGGAAT CAGTTGAGCG CATCATCCGC GAGTTGCTGC AAAAGCGCTT CCTGACCAAG CAGAAGCGTA GCCTGGCAGC GTTCCACCGC 500
GAGGTCGCGC AGGCTTGCAA AGCGCAAAAG CTGCGGGCGC CGGCGCGCAA CACCGTGGCT CTGCGGATCG CCGGCCTCGA TCCGCTCAAG GCCACTCGCC 600
GCCGGGAAGG TCAGGATGCG TCCCGCAGCC TGCAAGGTGT CGGTGGTGAG CCTCCCGCCG TGACCGCGCC ACTGGAACAA GTGCAGATTG ATCACACGGT 700
CATCGACCTG ATCGTGGTGG ACGAGCGCGA CCGGCAACCG ATTGGCCGTC CGTATCTGAC CATCGCCATC GACGTGTTTA CCCGCTGCGT GCTCGGCATG 800
GTCGTCACGC TGGAAGCGCC GTCATCTGTT TCGGTCGGCC TGTGCCTTGT GCATGTCGCC TGCGACAAGC GTCCCTGGCT GGAGGGTCTG AACATAGAAA 900
TGGAGTGGCC GATGAGCGGC AAGCCCAGGC TGCTCTACCT GGACAACGCG GCCGAGTTCA AGAGCGAAGC GCTACGCCGA GGCTGCGAGC AGCATGGCAT 1000
CCGGCTTGAC TATCGCCCGC TCGGGCAGCC GCACTACGGC GGCATCGTGG AACGGATCAT CGGCACGGCG ATGCAGATGA TCCACGACGA ATTGCCAGGG 1100
ACGACCTTCT CCAACCCTGA CCAGCGCGGC GACTACGATT CCGAAAACAA GGCCGCCCTG ACGCTGCGTG AGCTGGAGCG CTGGCTCACG TTGGCGGTGG 1200
GCACCTATCA CGGCTCTGTG CACAACGGCC TGCTTCAGCC GCCGGCGGCG CGCTGGTCAG AAGCCGTGGC GCGTGTCGGT GTACCGGCTG TCGTCACCCG 1300
CGCCTTGGCT TTTTTGGTCG ATTTCCTGCC CATCATTCGC CGTACTCTGA CTCGCACCGG CTTTGTCATC GACCACATTC ACTACTACGC CGATGCGCTC 1400
AAACCGTGGA TCGCACGACG CGACCGCTTG CCCGCTTTCC TGATCCGGCG CGACCCGCGT GACATCAGCC GTATCTGGGT GCTGGAACCG GAGGGGCAGC 1500
ATTACCTGGA AATCCCCTAC CGTACCTTGT CGCACCCGGC TGTCACCCTC TGGGAACAAC GGCAGGCGCT GACGAAATTG CGGCAGCAGG GACGCGAACA 1600
GGTGGATGAG TCGGCGCTGT TCCGCATGAT CGGGCAGATG CGCGAGATCG TGACCACCGC ACAGAAGGCC ACGCGCAAGG CGCGGCGCGA CGCGGATCGA 1700
CGCCAGCACC TCAAGGCATC GCCTCCGCCG GACAAGCCGA TTCCGCCGAA AACGGACGTT GCTGATCCGC AGGCAGACAA CCTGCCTCCG GCCAAACCGT 1800
TCGACCAGAT CGAGGAGTGG TAGCCGTGGA CGAATATCCC ATCATCGACT TGTCACACCT GCTGCCAGCG GCACAGGGGC TGGCTCGGCT GCCGGCGGAC 1900
GAGCGCATCC AGCGCCTTCG CGCCGACCGC TGGATCGGCT ACCCGCGCGC GGTCGAGGCG CTGAACCGGC TGGAAACCCT GTATGCGTGG CCAAACAAGC 2000
AACGCATGCC CAACCTGCTG CTGGTTGGCC CGACCAACAA CGGCAAGTCG ATGATCATCG AGAAATTCCG GCGCACGCAT CCGGCCAGCT CCGACGCGGA 2100
CCAGGAACAC ATGCCGGTGC TGGTCGTGCA GATGCCGTCC GAACCGTCGG TGATCCGCTT CTACGTCGCG CTACTTGCCG CGATGGGGGC ACCATTGCGC 2200
CCGCGCCCAC GGCTGCCGGA AATGGAGCAA CTGGCGCTGG CACTGCTGCG CAAGGTCGGC GTGCGCATGC TGGTGATCGA CGAGCTGCAC AACGTCTTGG 2300
CCGGCAACAG CGTCAACCGG CGGGAATTTC TCAACCTGCT GCGCTTCCTC GGCAATGAGC TGCGCATCCC ATTGGTCGGG GTCGGCACGC GCGACGCCTA 2400
CCTGGCCATC CGCTCGGATG ACCAATTGGA AAACCGCTTC GAGCCCATGA TGCTGCCGGT GTGGGAGGCC AACGACGATT GCTGCTCACT GCTGGCCAGC 2500
TTCGCCGCTT CGCTTCCATT GCGGCGACCC TCGTCGATTG CCACGCTGGA CATGGCCCGC TACCTGCTCA CACGCAGCGA GGGCACCATC GGCGAACTGG 2600
CGCACTTGCT GATGGCGGCG GCCCTCGTCG CCGTGGAGAG CGGCGAGGAA GCGATCAACC ACCGCACGCT CAGCATGGCC GATTACACCG GCCCAAGCGA 2700
GCGGCGTCGG CAATTCGAGC GGGAACTGAT GTGAAGCCAG CGCCACGCTG GCCACTGCAT CCGGCACCCA GGGAAGCCGA AGCCCTGTCT TCGTGGCTCA 2800
ACCGCGTGGC CCTTTGCTAT CACATGGAAG TGTCCGAGCT GCTGGAGCAC GATCTTGGTC ACGGCCAGGT TGATGACCTG GACACCGCGC CACCACTGGC 2900
GCTGCTGGCG ATGCTCTCCC AGCGGAGCGG TATCGAGCTG GATCGGCTGC GCTGCATGAG TTTCGCCGGC TGGGTGCCTT GGCTACTGGA CAGCCTTGAT 3000
GATCAGATTC CAGCCGCATT GGAAACCTAT GCGTTCCAGC TCTCGGTACT GCTGCCGAGA CTCCGCCGTA AGACGCGATC CATCACGAGC TGGCGTGCCT 3100
GGCTGCCCAC CCAACCGATA CACCGCGCCT GTCCGCTCTG CCTGAACGAT CCGGAGAACC AAGCCGTACT GCTCGCGTGG AAGCTGCCCC TGATGCTGAG 3200
CTGCCCACTG CATGGCTGCT GGCTGGAATC CTATTGGGGC GTGCCAGGGC GGTTTCTCGG CTGGGAGAAC GCCGACGCCG AACCGCGCAC TGCCAGCGAC 3300
GCGATTGCGG CGATGGACCA GCGTACCTGG CAGGCACTGA CGACCGGCCA CGTGGAGTTG CCGCGCCGAC GCATCCACGC CGGATTGTGG TTTAGGCTGC 3400
TACGCACGCT GCTCGATGAG CTGAACACCC CGCTTTCGAC GTGCGGCACC TACGCGGGGT ATCTCCGCCA AATCTGGGAA TGCTGCGGGC ATCCGCTGCG 3500
TGCTGGGCAA AGTCTGTGGC GACCGTATGA AACCCTGAAC CCGGCAGTAC GGTTGCAGAT GCTGGAGGCG GCGGCAACGG CAATCAGCTT GATTGAGGTG 3600
AGGGATATAA GCCCGCCAGG CGAGCACGCA AAGCTATTCT GGTCCGAGCC CCAAACCGGG TTCACCAGTG GCCTGCCGGC GAAAGCGCCG AAGCCCGAAC 3700
CCGTCGATCA CTGGCAGCGT GCAATCCAGG CCATTGATGA GGCCATCATT GAAGCACGAC ACAACCCCGA GACGGCACGC TCGCTGTTCG CGTTGGCTTC 3800
CTATGGTCGG CGCGACCCCG CTTCCTTGGA ACAGTTGCGC GCCACCTTCG CGAAGGAAGG CATCCCCCCG GAATTTCTGT CACATTATGA GCCTAGCCTA 3900
CCCTTTGCAT GCCTTAGACA GAATGACGGG TTAAGTGACA AATTTTGACG TGCAGAGCTT CCCGATGCAA ACTGTCACAT AATCGAACGT ATATGTGACA 4000
GGTACAAGAT GCTGATTGGC TACATGCGAG TATCGAAGGC GGATGGCTCC CAGGCGACGG ACTTGCAGCG CGATGCGCTG GTCGCGGCCG GTGTTGATCC 4100
GGCGCATCTC TATGAAGACC AAGCGTCCGG AAAACGCGAG GATCGTCCCG GTCTGGCGAG CTGTCTGAAG GCACTACGGC CAGGCGACAC GTTGGTCGTT 4200
TGGAAACTGG ATCGGCTCGG GCGCGACCTG CGCCATCTGA TCAATACCGT CCATGACCTG ACCGGACGCG GCATCGGCCT CAAGGTGCTG ACCGGGCACG 4300
GCGCGGCCAT TGACACCACG ACCGCCGCCG GCAAGCTGGT CTTCGGTATC TTCGCCGCGC TGGCCGAGTT CGAGCGCGAG TTGATCGCCG AGCGCACCGT 4400
GGCGGGCCTG GCCTCAGCAC GGGCACGCGG CCGGAAAGGC GGCCGGCCGT TCAAGATGAC CGCCGCCAAG CTGCGGCTGG CGATGGCGGC AATGGGGCAG 4500
TCAGAGACCA AGGTCGGCGA CCTGTGCCAG GAACTTGGCA TCACGCGGCA GACCCTGTAT CGGCATATTT CACCCAAGGG CGAGCTACGT CCAGATGGCG 4600
AGAAGCTACT CAGCCGAATT TGATGCCGAC ATGAGGCGAC GTAGCGAAAG CGTGGTTTGT CTCAATTTGA CGGCGGCGAA CCGCAAGCGT TCGGTTCGCC 4700
GCTCGTTTCG GTCGCAGTGC TGGCCCGCGC CTGGAAACGT TGATAACACT CCAGCCCGCA GAAGTGCTCG ACGTACTCCG CGCCTTCCGG TGTGAAGGCG 4800
GCATCGAGCG GAATTTCCTT GCAGCACACG CAGCAACTGG TGGCGGTCGG ATCATTTGCA TTCATGGTGG CACCCCTCCA TTGACTGACG AAGACGGCGA 4900
ATGCCGCCGC CGGCATCGGC TTTGCGAACA GAAAGCCTTG CCCGCGCTCG AACGCTTGGG CCCTCCGCCG TAGTCCATCC ATCCGGCCGG GAAGCGCTCA 5000
TGATCTTTCC CTGAATGCCC GCAACGCCCG CGCCAGTGAC AGAAGAAACA GGCCGGTCAA ACCGAGCGCC GTGATGACCC AATACTCGAC AAGGAATGCA 5100
CCGGCGGTTG TGCCGGCCAG CACGGCAGCG AGGATGGACA GGTGGCAGGG GCAAGTCAGC ACGGCCAGCG TGCCCCACAG GTAGCCGGTG AACGGTTTGT 5200
GCGTCTCGGC CGGCATGCGC TCGGGGCTGT TCATGGCAAA CTCTCCGCAT GCTGTGCCGG CGCGGTCGGC ATGGCGGCCA ACTGCACTTC CAGATTGGCC 5300
AACGCTTCGC GCCGGCGTTC GACGAACTGA CGCAGCACAG CAAGCTGCGC GGCAGTTTCA TCGCAGTTCG CCGCATCCAG CGCCCGGCAC AGCCGCGCCA 5400
ATGCGCCGAG GCCGATGCCC GCCTCGAAGG CGGCCCGCAC GAAGCACAGT CGCTGCAAGG CGGCGTCATC GAACAGGCCG TAGCCACCCG TGGTGCAGGC 5500
GACTGGCCGC AGCAATCCGC GCAGCAGGTA GTCGCGCACG ATATGCACGC TCACCCCGGC ATCAAGGGCC AGCCGGGACA CCGTGTAGGC GTTCATCGAA 5600
CACCTCCTTT TGGTCGGTTC ACGGCAATGC ATATACCGTT TCGCCGAGTT CAATCCGCGC GCTGCGAATC CGATGCCGGT GCCGTAGAAC ATTGGGTCGA 5700
TATCCGATCA CGGTGTCCTA GATGACATGG TCTGCAACAG ATGTCGATTA AACTCCTGGC CCAAGCCGAA AGCCTCGTGG ACACTGACGA TCGCCAATCC 5800
TTCCAATCCT TGATGCTTGG AGGCCCAGTC TTCCGCCGTC GGGACAGATG CAAAGAAATG TACATGGCAA CAGAAGGACT GACGAACGTC GGCTGCTTCC 5900
TGCGGCAATA CCAAGGACAC CGCCATGCCG GCAGGTTCGA CAGCCTGTAT CTCGCTGGGT GAAACCGTGA GTGAAACGGG TGCTCCGGTT GCAGCGCAAT 6000
GCGATGAGAC GCGAGCTGTA CGGCCGATCA GCGCCGGAAA TATCAAGGTG TCCAGCGCGC ACCAGGCATA CAGACGGCGG TCGTCAATTT CAAAGACATA 6100
CGAAGTCTCG CGCAAGGTGA GGCCGTAGCC GATGATGTTC CCATCTTTGT CATATTCGGT ACTGGTGGCC TGTTCGAGTA CGGCGGCCAC TCGCTCAGCG 6200
GGCCAGTCGA GAATCCCGGC AAGTGTCGTT CGTGAAACCG GACGCCCCTT GGCGAGTTCC CGCAGTAGCG GGACCAAGAG ATCCGCAGTA CCATTGGTAC 6300
GATTGACCGA AGTGAGACGT TCTAAAATAT ATGGGGCGAG CTTCATGGTT CCATCTCCTT TCATCCTGCG CAGCAGGACA ATTGTTTGAC ATCCTTGGTG 6400
AAGGTCTGCG CCGCGAGCTT CAGCCCCTCG ACCATCGTCA GGTAGGGGAA CAACTGGTCA GCCAGTTCCT GTACGGTCAT GCGGTTACGG ATCGCGAGCA 6500
CCGCCGTCTG GATCAGCTCG CCCGCTTCCG GGGCCACTGC CTGTACCCCA ATGAGTCGTC CGCTACCTTC CTCGATTACC AGCTTGATAA AGCCGCGTGT 6600
GTCGAAGTTG GCGAGCGCAC GCGGCACGTT ATCCAGTGTT AGCAGGCGGC TGTCGGTCTC GATCCCGTCG TGGTGCGCTT CCGCCTCGCT GTAGCCCACA 6700
GTGGCGACCT GCGGATCGGT GAACACCACC GCCGGCATCG CGGTCAGATT GAGCGTAGCG TCTCCGCCGG TCATGTTGAT GGCCGCACGG GTGCCGGCGG 6800
CCGCTGCCAC ATAGACGAAT TGCGGCTGGT CAGTGCAGTC TCCTGCGGCA TAAATGTGTG GCGTACTGGT GCGCATGCCC TTGTCAATGA CGATGGCTCC 6900
CTGCGCATTG ACGGCGACAC CCGCCGCTTC CAGCGCCAAG CTGCGCGTGT TCGGCGTGCG GCCGGTAGCG ACCAGCAACT TGTCGGCGCG CACTTCGCCG 7000
TGCCCTGTGG TCAGCACGAA TTCGCCGTCC GCATAGGCGA CCTGGCTGGC TTGCGTGTGT TCCAGAACCT TGATTCCTTC GGCACGAAAG GCGGCTGTGA 7100
CGGCCTCACC GATGGCCGGG TCTTCGCGGA AGAACAGTGT GCTGCGCGCC AGGATCGTGA CCTGGCTGCC CAGCCGGGCG AAGGCTTGCG CCAGTTCCAG 7200
CGCCACCACC GACGATCCGA TCACGGCTAG GCGTTCGGGA ATGGTGTCAC TCACTAGGGC CTCGGTAGAT GTCCAGTACG GCGTGCCTTT CAAACCAGTG 7300
ATGGGCGGAA TGGCCGGACT GGCACCAGTG GCGACCAGGC AGCGATCGAA CACCACGACG CGCTCGCCGC CATCGTTCAA ACGGACGGTA AGGCTTTGGT 7400
CATCCTTGAA ACGCGCTTCA CCATGCAGAA CGGTGATGGC CGGGTTGCCA TCCAGGATGC CTTCGTACTT GGCGTGGCGC AGCTCATCGA CGCGCGCCTG 7500
CTGCTGGGCC AGTAGTTTGC TGCGGTTAAT CGCCGGCACA GTAGCCGCGA TGCCATCGTC GAACGGACTT TCACGGCGCA GATGCGCAAT GTGGGCGGCA 7600
CGGATCATGA TCTTGGACGG TACGCAGCCG ATGTTGACGC AGGTGCCGCC GATAGTACCG CGCTCGATCA GCGTGACTTT CGCGCCTTGC TCGACGGCCT 7700
TCAGCGCCGC CGCCATTGCA GCGCCGCCGC TACCGATCAC GGCGACCTGC AACTGGCGTT CACCGTCGCT GCCCTTGTCG GCGGTCCCCA TCCAGCCGCG 7800
TACCTTGTCG AGTAGCCCGG CGCGGTTGTC CGTCGATAAG GTATCAGCGA ACGTTGCCTT GTAGCCGAGT CCGGCCACGG CGGCAGTCAG TGCGTCCGAT 7900
GCGGTGCCGG GGTCAAGGTC GAGTTGGGCC GCGCCCTTGG CGTAGGACAC GACGGCCGAC TGTACGCCGG GCACTTTCTC CAAGGCTTCC TTGACGTGCG 8000
TAGCGCACGA ATCGCAGGTC ATGCCGGTGA TCTTAAGGGT GGTCATGTTT GTTCCTTCTC TGTTGTCGGC GACGGTCGTT TCCGTCAGCC ATGTTGTGGT 8100
GGCAGTTCGC AGCCGTCCGG GCCGCAGCGG CGATGTGCCG GCGAGACGAA ATCCCAGATC GACACCCCGA CCATCAAGGC CAGACCGACG TACATCAGGT 8200
TCGCCGTCCA CCAGTTGCCG AGAAGCCAAA CCGTGGCCGC GAATACGATG GCCGGCCTGA TCATGCCGAG CAGGCTGCGG TGCCATTGAC GATGACTCAG 8300
CCAGCCCAGC GCGTTTGCTA ACAGGGCGAT GGCGGCAAAC AGCGGCAATA GCCTAGAGAT AAACAGGCCC TCGTATTCAC TCAGGAAGCC CAGCCCTATG 8400
GCCGCGCCGA AACTGGCGAT GGCTGGGAAA CAAGCCGCGC AGCCCATCGC GGAAACGACG CTGCCGAGCG CTCCGGTTTT ATCGGCGATG CGTGTAATCA 8500
AGCCCATGAT GTCGCTCACT GCTTAACACT GGAACTTCTT GTCCATTCCA TAGCCTGAGC ATCGCCGTCC GCGATCTGCT CACGTGTCAA TCTGGCCGCA 8600
AGCTCGGCGC GCAGCTTGAC CGCGGTCTCG TCGCCGCGGG CGGCGGCGAT GCCGAACCAC TTGTACGCCT GGACCAGATC GGACGCGGCC GGAGCGACGC 8700
CCTTCGCGTA CAGCTGTGCC AGCTTAACTT GCGCCTGTGT GTGGTTCTGC TCAGCGGAGC GGCGGTACCA ATTCACGGCC TCGCTGTCGT CAGCGGGCAC 8800
AGGCCGTGCG TGGCGACGAT AGAAGGTGTC GTTGGCATGC CCTTCGTAGA TGCGCGCGAG GTTGAACTGG GCGTCCGCCT CGCCCTGCTC TGCCGCTGAG 8900
CGGAACCACT TCCACGAGAC TGCCTGATCC TGCGCGACGC CGATGCCGTA CTTGTACGCC ATGCCGGTGA CGTTCTGCGC AATGGGTTCA CCCGCTGTGG 9000
CCTTGCGCTC CCATTCGCTT TGCGTGGTAG GCGAGAGCGA CTCGATGGCC GCCTCCATCC TTTTGAAGTC ATAGGCCAAC GCACCGACGC TCATGAGCAT 9100
CAGAAGGCCG CTTACGACGG ACGAACGTCC GTATCTAAAC AAGTTACTCA TCATCGCTTT CCGGGTAGAT TTACTGCTTG ACGCTGGACG GAAAGCCCGC 9200
GTCTCCGGTT GCCTTGATCA GCTTCTGCAC GCTGGTCTTG GCATCATCGA ACGTGACAAC CGCTTCGCGT GTCTCGAAGG TCACGTCAAT TTTGCTGACG 9300
CCTTCGACCT TGGAAATCGC CTTCTTGACG ATGATCGGGC AGGTGGAGCA GGTCATGCCC GGTACGGACA GCGTGACGGT CTGGGTGGCG GCCCACACGG 9400
GGGCAACAAC GGCAGCGAGG GCGAGGGCGG CAAACAGTTT TTTCATGATG AACTCCTGTG ATTAATAGAA AAATGGCATG ACGTAGGGAA ATCCGAGCGA 9500
GACCAGGACC AGCGCGGCCA CGACCCAGAA AATGAGCTTG TAAGTAGCTC GCACTTGGGG AATCGCGCAG ACCTCACCCG GTTTGCAGGC TTGCGTAGGG 9600
CGGTAGATGC GCCGCCAGGC GAAGAACAAC GCGACCAACG CTGCACCGAT GAAAATCGGG CGATACGGCT CCAGCACGGT CAGGTTGCCG ATCCATGCCC 9700
CGCTGAATCC CAAGGCGACC AAGACCAGCG GCCCGAGGCA GCAGGCCGAG GCGAGGATGG CGGCCAGCCC GCCAGTGAAG AGCGCGCCGC GCCCGGTTTG 9800
TGGTTCAGAC ATGCGCTTGT CCTTTCGAAT TTGAATTGGA TAGCGTAACC TTACTTCCGT ACTCATGTAC GGAGTCAAGC GGTATGGAAA ATAATTTGGA 9900
GAACCTGACC ATTGGCGTTT TTGCCAAGGC AGCCGGCGTC AACGTGGAGA CCATCCGGTT CTATCAGCGC AAGGGCTTGT TGCCCGAGCC GGACAAGCCC 10000
TATGGCAGCA TTCGCCGCTA TGGCGCGGCG GACGTGACAC GGGTGCGATT CGTGAAATCG GCCCAGCGGT TGGGCTTCAG CCTGGATGAA ATCGCCGAGT 10100
TGCTGCGGCT CGACGATGGC ACCCACTGCG AGGAGGCCAG CAGCCTGGCC GAGCACAAGC TCCAAGACGT GCGCGAGAAG ATGGCCGATT TGGCGCGCAT 10200
GGAGGCTGTG CTGTCTGACC TGGTGTGCGC CTGCCATTCG CGGCAGGGGA ATGTTTCGTG TCCGCTGATT GCGTCGTTGC AAGGTGGAAC GAGCTTGGCA 10300
GGGGCTTCCA CAGCTTAGCG TGCTTTATTT TCCGTTTTCT GAGACGACCA CAGATCAGAA AAGACTGTGC AGCCGACTCT TGATATTCCG TGCAGTCACC 10400
TTCTGAAAAT GACA
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| repeat t3 |
78-97 |
20 |
TCAGAAGTCA TCTGCACCAA |
| r5 |
3872-3885 |
14 |
AATTTCTGTC ACAT |
| r3 |
3928-3941 |
14 |
GGGTTAAGTG ACAA |
| res |
3972-4001 |
30 |
CTGTCACATA ATCGAACGTA TATGTGACAG |
| r2 |
3972-3985 |
14 |
CTGTCACATA ATCG |
| r1 |
3988-4001 |
14 |
CGTATATGTG ACAG |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tniA |
Tn5718 |
144-1823 |
Transposase |
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+ |
| tniB |
Tn5718 |
1826-2734 |
Accessory Gene |
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+ |
| tniQ |
Tn5718 |
2731-3948 |
Accessory Gene |
Target Site Selection |
+ |
| tniR |
Tn5718 |
4009-4623 |
Accessory Gene |
Resolvase |
+ |
| tniM |
Tn5718 |
4662-4982 |
Passenger Gene |
Hypothetical |
- |
| merE |
Tn5718 |
4998-5234 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merD |
Tn5718 |
5231-5692 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merB |
Tn5718 |
5708-6346 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merA |
Tn5718 |
6361-8046 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merC |
Tn5718 |
8085-8507 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merG |
Tn5718 |
8516-9154 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merP |
Tn5718 |
9171-9446 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merT |
Tn5718 |
9462-9812 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merR |
Tn5718 |
9884-10318 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniA |
TniA |
Tn5718 |
1680 |
144-1823 |
+ |
| Class: | Transposase |
| Function: | putative transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MASDTSLIAE QGVATLPDAA WAQARQRAEI IGPLAALDVV GHEAADAAAH ALGLSRRQVY VLIRRARQGA GLVTDLARSR SGGGKGKGRL PESVERIIRE
LLQKRFLTKQ KRSLAAFHRE VAQACKAQKL RAPARNTVAL RIAGLDPLKA TRRREGQDAS RSLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDERDRQPI
GRPYLTIAID VFTRCVLGMV VTLEAPSSVS VGLCLVHVAC DKRPWLEGLN IEMEWPMSGK PRLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WSEAVARVGV PAVVTRALAF LVDFLPIIRR
TLTRTGFVID HIHYYADALK PWIARRDRLP AFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALTKLR QQGREQVDES ALFRMIGQMR
EIVTTAQKAT RKARRDADRR QHLKASPPPD KPIPPKTDVA DPQADNLPPA KPFDQIEEW
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniB |
TniB |
Tn5718 |
909 |
1826-2734 |
+ |
| Class: | Accessory Gene |
| Sequence Family: | ATP binding protein? |
Protein Sequence:
|
MDEYPIIDLS HLLPAAQGLA RLPADERIQR LRADRWIGYP RAVEALNRLE TLYAWPNKQR MPNLLLVGPT NNGKSMIIEK FRRTHPASSD ADQEHMPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSSIAT LDMARYLLTR SEGTIGELAH LLMAAALVAV ESGEEAINHR TLSMADYTGP SERRRQFERE
LM
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniQ |
TniQ |
Tn5718 |
1218 |
2731-3948 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Target Site Selection |
| Function: | putative transposition gene |
| Comment: | similar function to Tn7 tnsD? |
Protein Sequence:
|
MKPAPRWPLH PAPREAEALS SWLNRVALCY HMEVSELLEH DLGHGQVDDL DTAPPLALLA MLSQRSGIEL DRLRCMSFAG WVPWLLDSLD DQIPAALETY
AFQLSVLLPR LRRKTRSITS WRAWLPTQPI HRACPLCLND PENQAVLLAW KLPLMLSCPL HGCWLESYWG VPGRFLGWEN ADAEPRTASD AIAAMDQRTW
QALTTGHVEL PRRRIHAGLW FRLLRTLLDE LNTPLSTCGT YAGYLRQIWE CCGHPLRAGQ SLWRPYETLN PAVRLQMLEA AATAISLIEV RDISPPGEHA
KLFWSEPQTG FTSGLPAKAP KPEPVDHWQR AIQAIDEAII EARHNPETAR SLFALASYGR RDPASLEQLR ATFAKEGIPP EFLSHYEPSL PFACLRQNDG
LSDKF
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniR |
TniR |
Tn5718 |
615 |
4009-4623 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Function: | putative resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
| Comment: | resolution of cointegrates || Protein: ACE81792.1 |
Protein Sequence:
|
MLIGYMRVSK ADGSQATDLQ RDALVAAGVD PAHLYEDQAS GKREDRPGLA SCLKALRPGD TLVVWKLDRL GRDLRHLINT VHDLTGRGIG LKVLTGHGAA
IDTTTAAGKL VFGIFAALAE FERELIAERT VAGLASARAR GRKGGRPFKM TAAKLRLAMA AMGQSETKVG DLCQELGITR QTLYRHISPK GELRPDGEKL
LSRI
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniM |
TniM |
Tn5718 |
321 |
4662-4982 |
- |
| Class: | Passenger Gene |
| Sub Class: | Hypothetical |
| Function: | putative modulator protein of transposition |
Protein Sequence:
|
MDGLRRRAQA FERGQGFLFA KPMPAAAFAV FVSQWRGATM NANDPTATSC CVCCKEIPLD AAFTPEGAEY VEHFCGLECY QRFQARASTA TETSGEPNAC
GSPPSN
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merE |
MerE |
Tn5718 |
237 |
4998-5234 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | mercury transport |
| Target: | Mercury |
| Comment: | similar to urf-1 in pKLH2 (GenBank AF213017), pKLH272 (Genbank Y08992), pMER610 (GenBank Y08993), pKLH210 (GenBank Y10102), Tn5036 (Genbank Y09025), orf1 in Tn501 (GenBank Z00027), and urf-1 in Tn5041 (GenBank X98999) |
Protein Sequence:
|
MNSPERMPAE THKPFTGYLW GTLAVLTCPC HLSILAAVLA GTTAGAFLVE YWVITALGLT GLFLLSLARA LRAFRERS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merD |
MerD |
Tn5718 |
462 |
5231-5692 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
Protein Sequence:
|
MFYGTGIGFA ARGLNSAKRY MHCREPTKRR CSMNAYTVSR LALDAGVSVH IVRDYLLRGL LRPVACTTGG YGLFDDAALQ RLCFVRAAFE AGIGLGALAR
LCRALDAANC DETAAQLAVL RQFVERRREA LANLEVQLAA MPTAPAQHAE SLP
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merB |
MerB |
Tn5718 |
639 |
5708-6346 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | putative organomercurial lyase |
| Transpoase Chemistry: | merB1 (Tn5718) Chemistry |
| Target: | Mercury |
| Comment: | organomercurial lyase |
Protein Sequence:
|
MKLAPYILER LTSVNRTNGT ADLLVPLLRE LAKGRPVSRT TLAGILDWPA ERVAAVLEQA TSTEYDKDGN IIGYGLTLRE TSYVFEIDDR RLYAWCALDT
LIFPALIGRT ARVSSHCAAT GAPVSLTVSP SEIQAVEPAG MAVSLVLPQE AADVRQSFCC HVHFFASVPT AEDWASKHQG LEGLAIVSVH EAFGLGQEFN
RHLLQTMSSR TP
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merA |
MerA |
Tn5718 |
1686 |
6361-8046 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | putative mercuric reductase |
| Target: | Mercury |
Protein Sequence:
|
MTTLKITGMT CDSCATHVKE ALEKVPGVQS AVVSYAKGAA QLDLDPGTAS DALTAAVAGL GYKATFADTL STDNRAGLLD KVRGWMGTAD KGSDGERQLQ
VAVIGSGGAA MAAALKAVEQ GAKVTLIERG TIGGTCVNIG CVPSKIMIRA AHIAHLRRES PFDDGIAATV PAINRSKLLA QQQARVDELR HAKYEGILDG
NPAITVLHGE ARFKDDQSLT VRLNDGGERV VVFDRCLVAT GASPAIPPIT GLKGTPYWTS TEALVSDTIP ERLAVIGSSV VALELAQAFA RLGSQVTILA
RSTLFFREDP AIGEAVTAAF RAEGIKVLEH TQASQVAYAD GEFVLTTGHG EVRADKLLVA TGRTPNTRSL ALEAAGVAVN AQGAIVIDKG MRTSTPHIYA
AGDCTDQPQF VYVAAAAGTR AAINMTGGDA TLNLTAMPAV VFTDPQVATV GYSEAEAHHD GIETDSRLLT LDNVPRALAN FDTRGFIKLV IEEGSGRLIG
VQAVAPEAGE LIQTAVLAIR NRMTVQELAD QLFPYLTMVE GLKLAAQTFT KDVKQLSCCA G
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merC |
MerC |
Tn5718 |
423 |
8085-8507 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | putative mercury transport protein |
| Target: | Mercury |
Protein Sequence:
|
MGLITRIADK TGALGSVVSA MGCAACFPAI ASFGAAIGLG FLSEYEGLFI SRLLPLFAAI ALLANALGWL SHRQWHRSLL GMIRPAIVFA ATVWLLGNWW
TANLMYVGLA LMVGVSIWDF VSPAHRRCGP DGCELPPQHG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merG |
MerG |
Tn5718 |
639 |
8516-9154 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | putative phenylmercury resistance protein |
| Target: | Mercury |
Protein Sequence:
|
MMSNLFRYGR SSVVSGLLML MSVGALAYDF KRMEAAIESL SPTTQSEWER KATAGEPIAQ NVTGMAYKYG IGVAQDQAVS WKWFRSAAEQ GEADAQFNLA
RIYEGHANDT FYRRHARPVP ADDSEAVNWY RRSAEQNHTQ AQVKLAQLYA KGVAPAASDL VQAYKWFGIA AARGDETAVK LRAELAARLT REQIADGDAQ
AMEWTRSSSV KQ
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merP |
MerP |
Tn5718 |
276 |
9171-9446 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
| Comment: | periplasmic mercuric ion binding protein |
Protein Sequence:
|
MKKLFAALAL AAVVAPVWAA TQTVTLSVPG MTCSTCPIIV KKAISKVEGV SKIDVTFETR EAVVTFDDAK TSVQKLIKAT GDAGFPSSVK Q
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merT |
MerT |
Tn5718 |
351 |
9462-9812 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | mercuric ion transport protein |
| Target: | Mercury |
Protein Sequence:
|
MSEPQTGRGA LFTGGLAAIL ASACCLGPLV LVALGFSGAW IGNLTVLEPY RPIFIGAALV ALFFAWRRIY RPTQACKPGE VCAIPQVRAT YKLIFWVVAA
LVLVSLGFPY VMPFFY
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merR |
MerR |
Tn5718 |
435 |
9884-10318 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | putative regulatory gene mercury resistance |
| Target: | Mercury |
Protein Sequence:
|
MENNLENLTI GVFAKAAGVN VETIRFYQRK GLLPEPDKPY GSIRRYGAAD VTRVRFVKSA QRLGFSLDEI AELLRLDDGT HCEEASSLAE HKLQDVREKM
ADLARMEAVL SDLVCACHSR QGNVSCPLIA SLQGGTSLAG ASTA
|
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| repeat t2 |
Tn5718 |
49-67 |
TACACGTCCG CTGAGGACT |
| repeat t4 |
Tn5718 |
110-128 |
TCAATACTCG TGTGCACCA |
| repeat t4 |
Tn5718 |
10324-10342 |
AAATAAAAGG CAAAAGACT |
|
| References |
|
|
Schneiker S, Keller M, Dröge M, Lanka E, Pühler A, Selbitschka W. The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa. Nucleic Acids Res. 2001 Dec 15;29(24):5169-81. doi: 10.1093/nar/29.24.5169. PubMed ID: 11812851
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