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Recombination Sites | |
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| Name: Tn558.1 |
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| Family: Tn554 |
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| Evidence of Transposition: yes |
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| Host |
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| Host Organism: | Staphylococcus warneri | Molecular Source: | plasmid pSCFS6 |
| Place of Origin: | Denmark | Date of Isolation: | 2006 |
| | Other Geographic Information: | porcine |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRR (Length: 27 bp) |  | TGTATTTCGCAACTGAAAATTGAGCCA |
| IRL (Length: 27 bp) | | TGTATATGTTAACTTAAAACTGAGCCA |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GATGTATTAA ACATAGTATC CTAAACTAGA GTACTCTAAG TACTCGAAGT TTAGGATTTT TTAATTACAG TGCTTTAACT ATTAAATATA TAAGGGTATT 100
ATTAATAGTA GTTAAAGTAT TTAAAGGTGG TGGAAAGATG AAGGTTCAGA AAGTAATTGT GGAGGAAAAA TCATATCCGT TATACATAGT GCTAGATAAA 200
GAATTTGAAG TGATAGAACC GGTTAAGCGA TTTATAAAGT ACTTGGATAA TACGGGCAAA GCTCCAAATA CCATTAAAAC ATATTGTTAT CATCTCAAGC 300
TGTTTTATGA ATTTATGAGC CAAAGTAGAA TCGAATTAGG AGATTTTCAA TTTGAGGATT TAGCAAACTT TGTAGGATGG TTAAGAAATC CAGCAGGGCA 400
TTTAAAGGTA ATAGATATAC AACCAAAGAA GGCTAAAAGA GAGGAAACAT CAGTTAATTC CATACTTAAC GCTGTAACTA GTTTCTTAGA GTATTTAAAT 500
CGCACAGAAA ATTTTAAAGC TATAGATATG TCTAAAGAAG CAAGAGGAAG AAACTTTAAG GGGTTTCTTC ACCATATTTC TAAAGGTAGA TCCTATAAAA 600
AAAATATTTT AAAGCTTAGG GTCAAAAAGA AACTTGTACA AGTATTAGAA CATGGACAAG TCAAAGCAAT AATTGAGGCA TGTCATACCA AAAGAGATAA 700
GTTACTTATT ATGCTTATGT ATGAAGGGGG ACTTCGGATA GGAGAAGCAT TATCCCTTCG TATTGAAGAT ATTTCAACAT GGGATAACCA GATTAACATC 800
AGGCCAAGAG ATCATAATGA AAATGGAGCT TATATTAAAC TTAAAAAAGA AAGAACTATT GATGTAAGTA AGGAATTAAT GGCATTATAT ACCGATTACT 900
TAGTACATGA ATATGGGGAA GATTTAGATC ATGATTATAT ATTTATTAAT CTTAAAGATT CTTATTTTGG CCACCCTCTA AAATATCAAA GTGTATTAGA 1000
CTTAATAAGA AGACTAGGAA AACGGACAGG GATTACTTTC ACTGCCCATA TATTACGTCA TACGCATGCC ACAGAGCTTA TTAGAAGTGG ATGGGATGCT 1100
GCATATGTAC AAAAAAGATT AGGGCATGCC CATGTACAAA CAACACTTGA TACGTATGTT CATCTTTCTG ATCAAGATAT GAAGAATGAA TATAAAAAGT 1200
ATCTCCAAGG GAGAGAAACA TGACAATGAA ATTCCCAAGT GTAGCAACTA ATCGAAAGCT TATCGCTAGT ACAGAGATTA ATAAAAAAAT AGCTAATATG 1300
ACAAGTGTTT TAAAAGGTTA TTGGGCAGCA GATAGATGGG ATATAAGAAT TTGTCCGCAT CCTAGTGCAA TTGAGTTAAG TAAGAATCCG TCACTAAGAA 1400
ATCGTTGGGT AAATTTCGAT AAGGTGGAAA ATGTCTGGTT GAAAACAGAA TTAAAATATT TTTATTACCT TCACTTGAAT AATGGAGCTT GGAATGCAAA 1500
ATCCGTTTGG ATTAGAAAGG GAACAGTGAT AAGCCGGATG ATGGGATTTT TAAATTTAAA ATATCCTAAT ATTACATCGA TAACCGAAGT GCCTATAAAA 1600
AAAGCTTTGA CAGAATACCG GACCTACTTA ACAGAACAAA AAGTAAAAAC TACGACTACT AATTACAAAC TTGATGTAAA TCAGCAGAAA GTTACTGTAC 1700
ATGCGAATTC CTATTACGTT ACTCATCTTA AGCAGTTTAT GGAATTCTAT GAGGACTTCT ATTTTGATGG GGAAGAATGG GAAAAAGATG TTTGGAATCG 1800
AAGAAAATTA TCATTACCGG AAGATAAGGT AAACCCAACA TCCTACGAAT ATACGATCAA CTTTAAGGGT TTTAAGAATA ATTATTTTAA AGAAATAGTT 1900
AAGCGATATT GTAAACTAAT GTTAAACACA GCTAGCTTTT CTCACGTAGT AGATATAGCT TCAAAATTAA AAGAATTTTT TAATTTCATG AACAAAAATT 2000
GTGAAGGTAT ACAAAGGATT CATCAATTAA CTAGAAATGA AATTGAGCAA TATTTTAATT ATATTAATTT AAAAGGTTTA AAACCCAGTA CTGTAACTGG 2100
ACGAATATCT ACTTTAGACG TTTTTTTTAC TACAATTCAA AGATATGACT GGAAGGATAC ACCTTCTAAG ATCCTTATCT TTCAAGAAGA TTACCCTAAA 2200
GTGCCGAAGG CACTACCACG TTATATTGAT GAACATATAC TTGAACAATT AAATGGGAAA TTAGATAAAT TGGAACCTTA TATTGCTACA ATGGTTATGG 2300
TACTTCAAGA ATGCGGGATG CGTATCAGTG AACTTTGTAC ATTGAAAAAA GGGAGCGTCA TAACCGATAA AGAAGGGGAT TGCTTTTTAA AGTATTATCA 2400
GTGGAAAATG AAGAAAGAGC ATATCATTCC TATTTCTAAA GAAATTGCTG CATTGATATT AGTTCAAGAG CAAAGGGTGG CTGATGAACT CGATGATGGA 2500
TGTGTATATG TGTTTCCCCG AAAAGATTGC TCACCATTGA AACAAGATAC CTTTAGGGTT AAATTAAATG AACTAGCTTA TGAAGAAAAG ATAACGGACA 2600
GCAACGGAGA AATTTTTCGT TTTCATGCTC ATGCCTTTCG GCATACAGTT GGCACTAGAA TGATAAATAA CGGAGTGCCA CAACATATTG TCCAGAAGTT 2700
CTTGGGTCAC GAATCACCGG AAATGACGGC AAGATATGCA CATATTTTTG ATGAAACCCT AAAGAAGGAA TTTACGAAAT TTAAGGAAAC CTTAGTAACG 2800
AATAACGGTA GCATTCTGGA TTTAAGTGAG GAAAATACTG AAGCTGACAA TACAGATCTT CAATGGTTTA AAAAGAATAT CAATGCACAG GCACTTCCTA 2900
ATGGCTATTG TCGGTTACCA GTAATTGCAG GACCATGTCC TCACGCAAAT GCATGTTTAG ATTGTACGAA TTTCTGTACA AGTAAACAAT TTCTTACTGA 3000
ACATGAAGAG CACTTAGAGC GAACTAAAGA AATACTAAAT AGGGCTAAAC AAAACCAATG GCAGCGTCAG GTTGAAACCA ATGAACGTGT TAAAAATAGA 3100
TTAGAACAGA TTATTCATTC GTTAAAGGAG ACGAATTAAA ATGATTAGAA AAGGTAACAC AACTGCCATA GTTCAGCTAG CTAAAGACAA GTCGGAGAAA 3200
ACAAGAATTA GGGTTGAAAA GACAATTTCA GAGATGGCAT TGAAAGAAGA GAAGATTAAT TTTAATTCCG TTGCACAAGA AGCAAATGTT TCAAAGTCAT 3300
GGCTTTACAA ACAAAAAGAT ATTAGAACTA GAGTGGAGAC ATTAAGAGGG ATGCAGATAA GTGAGTTAAC CCCCCGTAAA CCTAGTAAAA GCCCTCGTTC 3400
AGAGGACGTA TGTATTTCGC AACTGAAAAT TGAGCCATTT CGCAATTTAA TTTTGAGCCA CTTATGAATG GCTATTTTCA AGCCACTTTT GCGTTTCTCT 3500
CATTCGGTAA GATGGGCCGA TCATATTCAC CACGTGCGAT TTATGCGTCA AGCGATCCGT CAATGCGGCG GTCAAAATAG GATCATGGAA TACCTCTTCC 3600
CATTTCGCAA AAGACAGGTT GCTCGTAATA ATGGTTGAGG ATCGACCAGC ACGCAACGAC AAATGTGTAA ACAGTAATTC AGCCCCTTCT TTATCGAAGG 3700
AAATGTAGCC TAATTCATCA ATGATAACGA GGTCATATTT CTCAAATCGC AATTCGAAAG AGCGTAAGGT CCTTTCGGAC CGGCTTTCCT TCAACTGATT 3800
GATTAAGGAC GAGACACTGG CGAAATAAAC CTTGTAGCCC GCTAAACAAG CTTCTACCCC TAAGCCGATC GCCAGGTGGC TCTTGCCGGT TCCTGGAGAA 3900
CCGGTCAGAA TCACATTCTG TCCAGCTTTG ATGAAATCGA GCGTCTGTAA GTTGGGCAGT TTTTGCTGCG CATCTGTCGG CAGCGCTCGA GTATCAATCT 4000
CCTCCAGCAG CTTTTTCTCC GGAAAGTTCG CACGGCGGAT CCGTGTGGAT TTAGACCGGA TCCAGCGGTC ATTCTTTTCC TTCGTTAACA CGGTGTGTAA 4100
CAGGTCAATC GCAGGTGTCG TTTCCTGGAA TGCTACGTCT TCTTCGACCA ACTCACGGAT GCCAGGAAGA CGTAATTCTT TGCACAGGTC GATGACGCTT 4200
TGCTTTTTAT CCATGTTCAA GCACTCCTTC ATCGACTTGA TTGAACATCG CTGAAAAGGC CTTAATGTTT TGAAGCGCCT GTTCGACCGT CTCGTCTGGA 4300
TGCAGCGGTA CCGCAGGTAC CAGATCTGTT TGTTCGCTCA GAAAGATTAG CTTTTCGGTC GTGATGTCGC CGAGACCTTT TGTCTCAATC TGTCGGACGG 4400
CAGCCATCAC GTTATCCCAC TGATTTTTCT CACGTACATA AAGGAGTAGC TCTAGAAAAT CTTTCTCTTT TCCGATATAA TGGTTTTCGA AGAGTTTTTT 4500
AATTTGATTT GGTGCTTGGC TCAAACATTC ACTTTGAGCT AAAGCGCCTT TTTTCTTTGT GAAAGTTTTT ATGTAATGAT AGAGATCCAT TTCCCATTGA 4600
TGAACACCCC AATTTCTCCG ATGTTCTGCG ACGAATTCCC CTTCAATAAA GAGACGGACT GAATCCGCAC TTACCTTTGC ACGAATCCAT GCGCCTACAT 4700
GACCTTCAGG TACGGAATAC CGATTTTGCT TAATCGTGAC GGTGCTATAT TTATCTACCC GACATTCCAC GACTTCCGAA ACATCGAATG GCAGAGGAAG 4800
CGCCTCTTGA GCAGCGGCAA CTTTTTCCTG GTCTTTCAAT TCTATATGAG CGAGTTTCTT TTCATGGTGA ATCCGTTTAT TGAGCGACAG AATGGTTTGG 4900
GCTAGACGTT TCTGGGCGTC TTCAAGAGAA GGGAATGCGA TGTCATACGA AAATGCTTTT CTGCGAACAA CCTCCACACT CCGTTCCACA TGCCCCTTCT 5000
GGTTTCCTTT TCTTGGCTCG CAGAGCCGGA TCCGGAATTC ATAGTAATTG GAGAGGTTGA TCATGCCATC CGTGATTTTC CGGTCTGTTC CGACAAACGA 5100
TTTCACCACG GTTCGCATAT TGTCGTAAGT GAAAACAGAG GGAACGAAAC CTAAGTGGTC AATCAGTTTG GTATGTGCAT CCTGTATGCA GATCATCGTC 5200
TCGGATTCAT AAAGCAGCGC AAACCGGTAA TTGCTGTAAG CCAAGGTGAA GACCGCCAGT GAATAGGACT TCTGTTTCCC GTCAATCACC AGTTTTACTT 5300
CTCCCCAATC AAATTCCACT TCCCAGGCCG CTGAATAGCG TTGGCGAATA TAGACCTCTT TTGTTCGTCT CTCCTCGCTA TTGACGAAAT TCCGAACCGT 5400
TGTATAGCCG ATATCGTACC CTTCTTCTTG CAGTTTTTCA TACATATCAA TCTTTTTCAT TTGTTGCTTG CTCATGTTGT TTTTGCGTTT CCATTCATTG 5500
TCCTGAATGA ACCCCTTGAG CCTTTCCACA ATCTCTTCCG TCATTTTACG TTTCACTCCA GCCCTTTTCT TGTAGGAGGG AGGCGATAAA ATATCTTCTG 5600
TAACCGGCAG GTTACGAACA TCGGTCGCCT TACTCTTCTC AAAGGCTTCG ATATATTTGG ATACGGTGTT TCTAGAGACC TTCACTTCTG TGGAAATTTG 5700
TCTTTGGCTG ACATCTTGAA GATGCAGCTG AATCACCTGT TGCTTCTTGT TCAACGTAAT CACTCCTGTT TTCCCCCTAA CGATTGTGCT AGGGTTATTT 5800
TCCTACAGAA GTGGCTCAGT TTTCAATTGC GTTGGTGGCT CAGTTTTAAG TTAACATATA CATGGGGGCT ATTTGAACAT TTACGTTAAG AAAATTGCAG 5900
CAAAAAATCG ATTCCTTGAA GTTTAGGAAT CGATTTTTAT ATTTAGCTTG TTTCGATAAC AAGCCTCTGT TATTTGAAGA GAGTCGAGAA GGGGACAGAG 6000
ATTTATTTCT ATACCCTCGT TTTTCATTAT ATTTTTATTA TTTTTGTTGA TATTGTCTCT TGGAAGGTCT GGTCATGTTC AACAAAAACC ATAGTCGGAT 6100
TAAAGGTTTG AATAAGCTCT TCAATTTGCA TTCGAGAGTA AATATCAATA AAGTTTAATG GTTCATCCCA AATATATAGG TGAGCTTTTT CACATAAACT 6200
TTTAGCGATA AGCAATTTTT TCTTCTGACC ACCTGAATAA TGAGATATAT CTTTTTCAAA CTGTACTCGG TCAAAATCTA GCTTTCTCAG GATGGCCTTA 6300
AACAACGATT CATCAATCTC ATTTTCTTCA ATAAAGTCAG CTAGCATCCC CTTTAAATGA GAGGTGTCTT GCTGAACATA AGAAGTTATC AGGTTAGAAC 6400
CCGTATTTAA CGTGCCTGTA TACTGTATTG GATCGCCTAA GATTAATTTT AAAATACTAC TTTTTCCACT GCCGTTCTTT CCATCCAGTA CAATTCTATC 6500
TCCTTGTTCA ACATTAAAAC TTATTGGTTT GTTGACAACT TGCCCATCAT ATATGACAGA CACATCTGTT AATTGAATGA GTTCCTTCGA TTTATATTCC 6600
ACTGGTTCAA ACTGTAGGGA CTCCGTTTTT TCAATGTTTT TTAGAAGCTT TGACTTTTCT TCAATCGATT TTTGCTGTCG AGCCTCAAGG TTCTTAGATC 6700
GTTTCATCAT TTTTGCTGCT TTATGTCCTA CAAAACCTTT GTCCAATTTA GAACCAGAAT TCGTTGTTCC ATTTTTTGAA GCTTCGACTC GGTTAGACCA 6800
ACCAGCCGAA CGTTTTGTAG ATTGTTCTAA CCTTCCAATA TCCTTCTGCA AGCGTTCATT TGTTGCTTGT TCATGTCCCT GCTGTCGGTC AAAGTTCAAC 6900
TTCCATGAGG AATAATTTCC ACTTTGAACC TCAATATCTG CTCTATTTAT AGACAAGATA TGATCAACAC AGCCATCTAA AAAGTTACGG TCATGAGAAA 7000
TTAAAATAAA CCCTTTTTTC TTCCTCAAGT AATTCGAAAC CGTCTTACGA GCTTCAGTAT CTAAATGATT TGTTGGTTCA TCAATTAATA AAAATTGTCC 7100
TTCGTTTAAA AATAGAGCAA CAAGCAATAC CTTTGTTTGT TCACCGTTTG ATAAAGTTTC AAAAGGACGG TACATGGCTT CGGCATCCAC ATTTAAATAA 7200
GCTATTTCTC GAAGAAATTC CCAGTCCTCA GCTTGAGGGC ATATTTCTTC TAAAATTTCA TGTGTATACT TACTTTTATC TTCTACTGGA TATGGGAAGT 7300
AGTTAAAATC GACCGAAGAA ATGATTTTCC CCCTATATTC AAATTTATCT AGTAATAAAT TAAAAAGGGT TGTTTTCCCT CGTCCATTTC GACCAATAAA 7400
TCCAAGCTTC CAATCTGTAT CAATTTGAAA GCTTACATCT TCAAAGATAT TATCAAAACT ACTCGGATAA GAGAAAGTTA AATTTTGTAC ATGTATCATT 7500
GACATTTTTA TTCCTCCTTT GTATATTATG ATTTCTTTTA ATACAAAGTC GGTATATCCA TCTATTCTAA ATTACTCCGT ATATGTTTGA TAGATTATAA 7600
CGACTTATAC GGAGTAATTC ATGTGTAACA TCCAATTCTA AAACCATGTT AATTCTCCTT TTCATTAGAA TGCAGTTAAA GGTATAGAAA AGTATACTTT 7700
TTTATAGGAA GAAAATAAAA ATCCTTCCAA AGAATTTGGA AGGGATTAAT CTGGTCTCAT ATTTAAAAGT CCCTATTGTA CCAACAGCAT TTGACGCAAT 7800
AGGTGTCACA AACCGACTTA TAAAAATGAT CAGACTAATC CTATAACTTA GAGTTTGAAA TATTTATTTC AAATAAGTTG AATTAGTAAA TCATTATTAT 7900
ACAGTCAGTC CTTTCGTCTA TTTATTTAAA ATAATTATAT GCCCTAATGA CTTTTTAGAA AAGCGAAATT ATAAATATTT CGCTTTTCAT ATTTAAGGAT 8000
AACACGAATG TATTCCTTTT GCATATCCCT ACTATTTTCA GGTGATTTTT GGTATTCGAG TTCAACCTCC TCATGGGATA CAATTCGTAT CCCACAAGAT 8100
TTAGCTGCGA TGGGCTTCGA TAATCAGCCC ATCGCACAGG CACTTACTAT CTCAACTATT AATCAACCAA TTAAAGAGCT GGAATACAAA TCTATTACAA 8200
TGATTATTAA GTTGATTAAC GGCGATGAAT TAATAGCTCA AACTGTCGAA CTGTCATACA CAATACTCTC TATTTGATGC TTACTTTAAA GCATAGAACT 8300
ATAAGGTTTT ACTAGAAAAA CTTTTCTGGA TAGTTGGTTT ACATATGACA CCTTATCGGT AGTAGCGTTA AATGGAATAA TAGAACACAA GAGGAAGACG 8400
GATGCTGATT AGCGCCCGCC TTCCTCTTTT GTCTGTAAAA GTATACTTTT ACGAACGCTA ATAAAGTGAG AAATCAAATG ATATTAAAAG GTTTTCAAAA 8500
AGTTGAAGAA GAACTTAGCA AGAGGGTTTC AGATTATATA ATTGAGGAGG GTTTTATGAA GCTGAACGCA TTCCCGAATA CTTTCAAGTT GTTCTCTAGA 8600
GAGACTACAT AAATTAACTG CCAAAGACTA CATTTTTAGA ATGCCATAAA CATCTTCAAG TATATATTTC ATTAACTTAC ATTTGTATTT AGGGAGAATA 8700
AAAAATCCTC CCAATTATTA TTGGAAGGAT TATCTATTCA TTTATACTAA ATAAGAGTTT TTTGTCATTC GACAAACAAA ACATCTAGTT AAACTGATTT 8800
AAAAAAAATG GATGACTAAT CCTATATCTT AGTACTTTGA AACTTATTCA TTTCAAATTA GAAGAATACA GATTAGTTAA TTATCTTCCA CCCAGTAGTC 8900
CATTCATATT TGAAGAAAAT ACTAGCATAA TTGAGTTATC AAAATAATAT TAATTGCATT AATATTATTA AAAATTCACC TTATTATATC AGCTATATAC 9000
CTTGTTCAAT ACTATTGGCT ATTTTGATAA TTACCATATA ATTGACCACA AGCAGCGTCA ATATCAATCC CAAATTGACT TCTAATTGTG ACATGGATAC 9100
CAGCAGACTT CAAAACTTTG TAAAAGGCTT CTACCTGCCC TTCGTTTGCT TCTCCATACA TCTCAGGTGC ACTTATTGTA GGATTGTATC GTATCAAATT 9200
TACATGATAT AACTTCCCTG ATTTATAGCG ACTTTTAAGA AGGCTAACAA CTTCGTTTGC ATGCTCAAGA GAATCATTTA CACCAGGCAA CATGATATAA 9300
GCTATATATA CTTTCCTTGA AGTTAATCTT ATATGTTCAT CGAGTATATT CATTACCTCA TCTATTGGGT ATCTATCATT TATTGGCATC AATTTGCTGC 9400
GTTCCTCACT ATAAGGTGAG TGTAATGAAA ATGTAAGATT TACTTGAGGA TATTCCTGGG TTATTTTTTT GATACTAGGT ATAATACCAA TCGTTGATAT 9500
AGAAAGTCTA CGAGGACTTA ATGCAAATAA ATTAGGATCC GTAAACGAAT CAAGAGCATC AAATACTTGA CGGTTGGCTA GAGCTTCACC CATTCCCATA 9600
AAAGAAATGC TATCAATTTG ATGACCTAAT AAATGGAAGT ATAAAACTTG ATCTGTTATC TCATCTACAG TTAGGTTTTT TTTCAATCCA ATGTCGCCTG 9700
TAGCACAAAA TTTACACCCA AAATTACATC CGCATTGTGA TGATATACAA AATGACTCCC AACCTGCTTT ATACTTCATG TTTACCGTTT CTACTCTCTC 9800
ATTCTTTGAT ACTTCAAAAA GCACTTTCGT AACTTGCTCT GAATTTTGCT CTGCTAAGAG CTTGATATTC AAAACTGTTT CTCCAAAATT ATTTATTAAA 9900
TCCTCCCTAA GTAATTTTGG AAGAACCTTC ATATCCTCAA ATCGACTAAT TCTTTGTTTA AAAATCGCAT TGGTTATTTG TTTTATTCTA TAATCAGGCT 10000
CATTATTACT TCTTAAAAAT TCCTGTATTT TACCATACTT TGTTTTATTA TTAAAATTCA TTTCTTTCAT CCTTTCACAA TTTGCTCTAG TTAAGAATCA 10100
ATTTCTTTTT GCACACAAAA AAAACACAGA TAAAAATTAC CGGTGCCGAA AGTCAAAACA TACAAATATG CATATTTCAC TACATAAAAC AAGTATGTTG 10200
ATGATCTTGT TTTAAACTTA TCCATAGTAG AGGCAAAGCT CCGGCAACTG TTTTTATATC ATTGTTTAGT TTAAAAAAGG ACAGACTACT CCCTTTAATA 10300
GCTAAACGGT TTCCGATTTT TGTATTTTCA CCGAATAAGA TTCTAAAAAC AGTTAACATA GCTATTACCT CCTTTCACTA ATTAATATAC TTAGCCTGTA 10400
CTGTAACATT TTAATATTCA AATGTAAATA TTAAAGTTAG CAACATAATG TAAAACCTAA ATCAACCAAT TTTATAAAAA CTTTTAGTGC CTTGTCTTCA 10500
TCTGATATTT ATGGACTGGG GAAACCAACT GGACGAGATA GAAGGTGGGG GGTGTATTTC GCAACTGAAA ATTGAGCCAT TTCGCAATTT AATTTTGAGC 10600
CACTTATGAA TGGCTATTTT CAAGCCACTT TTGCGTTTCT CTCATTCGGT AAGATGGGCC GATCATATTC ACCACGTGCG ATTTATGCGT CAAGCGATCC 10700
GTCAATGCGG CGGTCAAAAT AGGATCATGG AATACCTCTT CCCATTTCGC AAAAGACAGG TTGCTCGTAA TAATGGTTGA GGATCGACCA GCACGCAACG 10800
ACAAATGTGT AAACAGTAAT TCAGCCCCTT CTTTATCGAA GGAAATGTAG CCTAATTCAT CAATGATAAC GAGGTCATAT TTCTCAAATC GCAATTCGAA 10900
AGAGCGTAAG GTCCTTTCGG ACCGGCTTTC CTTCAACTGA TTGATTAAGG ACGAGACACT GGCGAAATAA ACCTTGTAGC CCGCTAAACA AGCTTCTACC 11000
CCTAAGCCGA TCGCCAGGTG GCTCTTGCCG GTTCCTGGAG AACCGGTCAG AATCACATTC TGTCCAGCTT TGATGAAATC GAGCGTCTGT AAGTTGGGCA 11100
GTTTTTGCTG CGCATCTGTC GGCAGCGCTC GAGTATCAAT CTCCTCCAGC AGCTTTTTCT CCGGAAAGTT CGCACGGCGG ATCCGTGTGG ATTTAGACCG 11200
GATCCAGCGG TCATTCTTTT CCTTCGTTAA CACGGTGTGT AACAGGTCAA TCGCAGGTGT CGTTTCCTGG AATGCTACGT CTTCTTCGAC CAACTCACGG 11300
ATGCCAGGAA GACGTAATTC TTTGCACAGG TCGATGACGC TTTGCTTTTT ATCCATGTTC AAGCACTCCT TCATCGACTT GATTGAACAT CGCTGAAAAG 11400
GCCTTAATGT TTTGAAGCGC CTGTTCGACC GTCTCGTCTG GATGCAGCGG TACCGCAGGT ACCAGATCTG TTTGTTCGCT CAGAAAGATT AGCTTTTCGG 11500
TCGTGATGTC GCCGAGACCT TTTGTCTCAA TCTGTCGGAC GGCAGCCATC ACGTTATCCC ACTGATTTTT CTCACGTACA TAAAGGAGTA GCTCCAGAAA 11600
ATCTTTCTCT TTTCCGATAT AACGGTTTTC GAAGAGTTTT TTAATTTGAT TTGGTGCTTG GCTCAAACAT TCACTTTGAG CTAAAGCGCC TTTTTTCTTT 11700
GTGAAAGTTT TTATGTAATG ATAGAGATCC ATTTCCCATT GATGAACACC CCAATTTCTC CGATGTTCTG CGACGAATTC CCCTTCAATA AAGAGACGGA 11800
CTGAATCCGC ACTTACCTTT GCACGAATCC ATGCGCCTAC ATGACCTTCA GGTACGGAAT ACCGATTTTG CTTAATCGTG ACGGTGCTAT ATTTATCTAC 11900
CCGACATTCC ACGACTTCCG AAACATCGAA TGGCAGAGGA AGCGCCCCTT GAGCAGCGGC AACTTTTTCC TGGTCTTTCA ATTCTATATG AGCGAGTTTC 12000
TTTTCATGGT GAATCCGTTT ATTGAGCGAC AGAATGGTTT GGGCTAGACG TTTCTGGGCG TCTTCAAGAG AAGGGAATGC GATGTCATAC GAAAATGCTT 12100
TTCTGCGAAC AACCTCCACA CTCCGTTCCA CATGCCCCTT CTGGTTTCCT TTTCTTGGCT CGCAGAGCCG GATCCGGAAT TCATAGTAAT TGGAGAGGTT 12200
GATCATGCCA TCCGTGATTT TCCGGTCTGT TCCGACAAAC GATTTCACCA CGGTTCGCAT ATTGTCGTAA GTGAAAACAG AGGGAACGAA ACCTAAGTGG 12300
TCAATCAGTT TGGTATGTGC ATCCTGTATG CAGATCATCG TCTCGGATTC ATAAAGCAGC GCAAACCGGT AATTGCTGTA AGCCAAGGTG AAGACCGCCA 12400
GTGAATAGGA CTTCTGTTTC CCGTCAATCA CCAGTTTTAC TTCTCCCCAA TCAAATTCCA CTTCCCAGGC CGCTGAATAG CGTTGGCGAA TATAGACCTC 12500
TTTTGTTCGT CTCTCCTCGC TATTGACGAA ATTCCGAACC GTTGTATAGC CGATATCGTA CCTTTCTTCT TGCAGTTTTT CATACATATC AATCTTTTTC 12600
ATTTGTTGCT TGCTCATGTT GTTTTTGCGT TTCCATTCAT TGTCCTGAAT GAACCCCTTG AGCCTTTCCA CAATCTCTTC CGTCATTTTA CGTTTCACTC 12700
CAGCCCTTTT CTTGTAGGAG GGAGGCGATA AAATATCTTC TGTAACCGGC AGGTTACGAA CATCGGTCGC CTTACTCTTC TCAAAGGCTT CGATATATTT 12800
GGATACGGTG TTTCTAGAGA CCTTCACTTC TGTGGAAATT TGTCTTTGGC TGACATCTTG AAGATGCAGC TGAATCACCT GTTGCTTCTT GTTCAACGTA 12900
ATCACTCCTG TTTTCCCCCT AACGATTGTG CTAGGGTTAT TTTCCTACAG AAGTGGCTCA GTTTTCAATT GCGTTGGTGG CTCAGTTTTA AGTTAACATA 13000
TACAGACGTA TTAATAAAAA CCTTAAAAAG CCGTATAAAG GCGTTAGAAG AAGAGAATGA ACGGTTAAAG GATCAAGTTC AAAAATTACA TGGCAAGCTG 13100
TTTTAGCAGA TTTGTGTTTC TTGGAATTTA TTGGGCACTT TGAATTGGCT ACCTAAAATG AAATCGCTAA AACCTTCAAT AACTTCAATA GCCCATTTCC 13200
CTAAATGTGT TAAGGGGAAA TGGGCTTTCT TCTAGTATTG TTGGCATGAT CGCAGAAGTG TTTTATGCTC TTAAATAATA CTTTTTAATA TATTGCAAAT 13300
ACTCATTAGC ACTTTTCTGT ATCTCTTCGC CCTTCATATC CGAATTAGCA CCGTAAAGTA CAAACTCTGG TACATATTCA GCATGAATCT ATGCACATAA 13400
AGATTTGAAT GGTGTTAACA TCTGGGTTAA TGTATGCTTG TTTTTACCCA TACTTGTAAA TTCACCTTTT TTTACGCCAG CTGATATAGC TAATCCTAAT 13500
TTTCGATTAT AAAATATTCT TTTACCCTTT GATCCGTAAG CCCATCCATA TATAATCACT TCATCGATCC ATTTTTTTAA TAATGAAGGA GAACTATACC 13600
AATATAATGG AAATTGAAAA ATAATATTAT CATGATTTTC AACTAATTCC TGCTCTCTTT TTACATTTAT AATAAAATCA GGATACTCTC TATAAAGATC 13700
ATGAATGGTA ATTTCGTTTG AATAAGACGC TGCTTTTTCT ACCCAAACTT TATTGATTCG AGAATTTGGC ATATCTGGGT GAGAAACGAT CACCAATGTT 13800
TTCATTGTTT CATCCTTAAC GTACTCAACT TTCGCACCAA TAAAACAGTG TACGAAAGTT GAGTTACTTA AAAGTATTCT ATTCTAAGAA ATTCAAATTT 13900
GCGTGATTCC TAAGCTATTT ATTTACAGCT TAAACTATAG AAGATGAACT AAACAATAAC TAATCTTTAC ATAACTAAGT TATTACCCAC GCTTTTTTAA 14000
ACCTAATCCA GCTATTAAGG CAATGAGTAT TGCCCCTGTA GCTGCAAGGA ACGCATCTGA GTAGGACATA GCGTCCAATA TATATAATGG ATTTATCGGC 14100
TCAGTAGCAT CACGTCGAGC GGATAATAAT GCTCCAATCA TACCTGCTCC AGTTCCTGCT CCAAGGTACA AAGCACCTTG GAAAATCCCC ATTCCGACAC 14200
CAACCTTGTC TGCATCGAGT GCACTTACTG CGGCGTTATT TGCGGGAGAA TTCGTGAATG CAAAAGCAAT CCCTACTCCG AGGACCCCCA CGGAAACTAA 14300
CAGAGGTGAA GCACCAGATG CATAGGTGGA CAAGAATAAG GTAGACAGCC CCATCAGAGT CATCCCAGTA ATTATCAGAC GTTTATCCCC AAATCGATCA 14400
GAAAGACGGC CAACGAAGGG AGATAAGATT GCAACAGCCA CACCACCTGG CAACAATATC ATTCCAGCCT GTCCAGAAGA GAGTCCATTC ACCTCAACGA 14500
CTAGTAATGG GACGAACACA AGAACAGCGA AATAAGCAAA CATCGAAAAA AATGCAATTA TGACCGTATT GACATAATCC TTGTTATTGA ACAGGACAGG 14600
TGGTACAAAT GGATTTTCTG CGGTAACAAT TCTCCAAATA AATCCCACCA AAGCTACAAC AGAACCAATT AGGCTAGTTA ACGATGAGAA CGAAGAAAAA 14700
CCAGAAGTTT CTCCTTGAGT GATGCCAAAA AGGAGTAATC CTACTGTGAG GCCGAGGAAT AAACCACCAA TGAAATCAAA GTTCTTATTG CTTCCTACGG 14800
ATTCTGCCGG TTTAATTGTC GGTAACGCGT AGTAGGCACC AATAACAATC ATAATGGCTA ACAAAAATGT GGACCAAAAC AAGGCATTCC ACCCTAAATA 14900
TTGACCAACT ACTCCACCAA ATATTGGACC AGCAGCAGTT CCAACACCAA TACTTCCTGC GATAATTCCC AAAGCTCCCC CACGTTTTCC TTGTGGGAAA 15000
ACCTTCGAAA TTGCAATGAT TGATAGAACT GGAATTGCGG ACATCCCAGC ACCCTGAACC ATTCTTCCCA AAACCAACAA TGGGAGGTTC GGGGCAATTG 15100
CACATAAAAG ACTACCACTT GCCAGAATCA TAATGGCAAA GATATATAGC TTTCGTAACT CAAAAAAGTC TGAGATTCGA CCATAAATCG GAACTCCAAT 15200
CGCAAGAACA AGTGCAATAC CACTAACTAT CCAACTCACT TGAGATTTCG AAGCTTCTAA ATCTTTGCTT ATTAGTGGAA GTACGGGATT GACTAAATCA 15300
GCCGTAATTG CACCTACAAG TACAGATAGG GAGAGTACCA TCATTAAAAG CCTAGTAGAA CCCCTTTTTT CAGATTGAAT CATTTCTTTA GATTTACTAT 15400
CCTTTTTCAT TTTATTTCCT CCTAAAATAT ATTGTGATTT TAGGAGGCTA AATCCACTGC TTTCACCATA AACCTCACCT CATATCTATT TATATTGTAA 15500
AACCAAATCA ACGAACTCAC CATATTTCTA CAGCATGATT AAAGATTCGG TTCTCCAAAC TAACTGAACT GATCAAACAA AAAAAAGGCA CCAGTTTAAC 15600
AACCGGTGCC TAATCATTCG TATGCATTTT TACAAATGCA ATAGATTCAT AAATTTTTGC CCATTATATA AAAGGAGGCA AAAAGTTTTC CGGTAGTGTT 15700
TCCATTTTTT GTTTTTGTGA AAAAGGACAT ACTGATCCCG TTGTACCTAA ATCCCCTGAA ACTTTTTACA TGCTTTCTAA ACTCGACATT AATGAAATCA 15800
ATTCCCATTA CTTTTTGCCT CCTTTCTCAT ATTGTGATAA TAACACAATA ATAATTGATG AAAAAGAAAT AATCAACCCT ACTTTTTTGA AAACCAATTT 15900
AAAGCTTTAC TACTTTTACT TACATAATAA AAGGCAGGTG CAGTATAAAC TTTTTTAAAT AGGTCTTCTT TAACGAGCAG GTAGCGTCAG TTAAAGTAGA 16000
TAATTTAAGA TCGAAATCAT ATTATAGATA TTCCGAAATT GGGCGTGATT GTTGCAGGTC AAAAGCTTAA TTCCTCGATA AAATAAAAAG GAATTAGTTT 16100
TTTTATTTGT GGTACATTCT TCTGACCGTA ATCAATTGTC ATCTAATAAT TACATTGTAT TTTTTCATTT GATTTAACAC GTTAAATATA TGTTCTTAAA 16200
GTAAAAACAT TGATGTTAAT GGATTTTTAG TAATTTACTC TTGATAAGAT CCGACGCCAT CAGTAAACGA TATTATGGTT GGTAAGAGAT TAAAGCTTAT 16300
AGGGGAATTG CTAAGTATTG ATGTA
|
|
|
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnpA |
Tn558.1 |
138-1223 |
Transposase |
|
+ |
| tnpB |
Tn558.1 |
1220-3139 |
Transposase |
|
+ |
| tnpC 5'-end |
Tn558.1 |
3141-3410 |
Accessory Gene |
Helper |
+ |
| istB |
ISSau9 |
3462-4232 |
Accessory Gene |
ATPase Transposition Helper |
- |
| istA |
ISSau9 |
4207-5544 |
Transposase |
|
- |
| lsaB (ARO:3003111) |
TnSau9 |
6027-7505 |
Passenger Gene |
Antibiotic Resistance |
- |
| cfrA (ARO:3003441) |
TnSau9 |
9012-10061 |
Passenger Gene |
Antibiotic Resistance |
- |
| istB |
ISSau9 |
10604-11374 |
Accessory Gene |
ATPase Transposition Helper |
- |
| istA |
ISSau9.1 |
11349-12686 |
Transposase |
|
- |
| tnpC 3'-end |
Tn558.1 |
13005-13106 |
Accessory Gene |
Helper |
+ |
| fla |
Tn558 |
13389-13805 |
Passenger Gene |
Other |
- |
| fexA (ARO:3002704) |
Tn558.1 |
13983-15410 |
Passenger Gene |
Antibiotic Resistance |
- |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn558.1 |
1086 |
138-1223 |
+ |
| Class: | Transposase |
| Comment: | tyrosine recombinase XerD||TIGR02225||phage integrase, N-terminal SAM-like domain||DNA breaking-rejoining enzymes C-terminal catalytic domain |
Protein Sequence:
|
MKVQKVIVEE KSYPLYIVLD KEFEVIEPVK RFIKYLDNTG KAPNTIKTYC YHLKLFYEFM SQSRIELGDF QFEDLANFVG WLRNPAGHLK VIDIQPKKAK
REETSVNSIL NAVTSFLEYL NRTENFKAID MSKEARGRNF KGFLHHISKG RSYKKNILKL RVKKKLVQVL EHGQVKAIIE ACHTKRDKLL IMLMYEGGLR
IGEALSLRIE DISTWDNQIN IRPRDHNENG AYIKLKKERT IDVSKELMAL YTDYLVHEYG EDLDHDYIFI NLKDSYFGHP LKYQSVLDLI RRLGKRTGIT
FTAHILRHTH ATELIRSGWD AAYVQKRLGH AHVQTTLDTY VHLSDQDMKN EYKKYLQGRE T
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpB |
TnpB |
Tn558.1 |
1920 |
1220-3139 |
+ |
| Class: | Transposase |
| Comment: | Phage integrase N-terminal SAM-like domain||Region: Phage_int_SAM_1||cl12235||Phage integrase family|| pfam00589 |
Protein Sequence:
|
MTMKFPSVAT NRKLIASTEI NKKIANMTSV LKGYWAADRW DIRICPHPSA IELSKNPSLR NRWVNFDKVE NVWLKTELKY FYYLHLNNGA WNAKSVWIRK
GTVISRMMGF LNLKYPNITS ITEVPIKKAL TEYRTYLTEQ KVKTTTTNYK LDVNQQKVTV HANSYYVTHL KQFMEFYEDF YFDGEEWEKD VWNRRKLSLP
EDKVNPTSYE YTINFKGFKN NYFKEIVKRY CKLMLNTASF SHVVDIASKL KEFFNFMNKN CEGIQRIHQL TRNEIEQYFN YINLKGLKPS TVTGRISTLD
VFFTTIQRYD WKDTPSKILI FQEDYPKVPK ALPRYIDEHI LEQLNGKLDK LEPYIATMVM VLQECGMRIS ELCTLKKGSV ITDKEGDCFL KYYQWKMKKE
HIIPISKEIA ALILVQEQRV ADELDDGCVY VFPRKDCSPL KQDTFRVKLN ELAYEEKITD SNGEIFRFHA HAFRHTVGTR MINNGVPQHI VQKFLGHESP
EMTARYAHIF DETLKKEFTK FKETLVTNNG SILDLSEENT EADNTDLQWF KKNINAQALP NGYCRLPVIA GPCPHANACL DCTNFCTSKQ FLTEHEEHLE
RTKEILNRAK QNQWQRQVET NERVKNRLEQ IIHSLKETN
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpC 5'-end |
N |
Tn558.1 |
270 |
3141-3410 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Helper |
| Sequence Family: | Tn554_family |
| Comment: | tnpC ORF interrupted by insertion of TnSau9 |
Protein Sequence:
|
MIRKGNTTAI VQLAKDKSEK TRIRVEKTIS EMALKEEKIN FNSVAQEANV SKSWLYKQKD IRTRVETLRG MQISELTPRK PSKSPRSEDV
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| istB |
IstB |
ISSau9 |
771 |
3462-4232 |
- |
| Class: | Accessory Gene |
| Sub Class: | ATPase Transposition Helper |
Protein Sequence:
|
MKECLNMDKK QSVIDLCKEL RLPGIRELVE EDVAFQETTP AIDLLHTVLT KEKNDRWIRS KSTRIRRANF PEKKLLEEID TRALPTDAQQ KLPNLQTLDF
IKAGQNVILT GSPGTGKSHL AIGLGVEACL AGYKVYFASV SSLINQLKES RSERTLRSFE LRFEKYDLVI IDELGYISFD KEGAELLFTH LSLRAGRSST
IITSNLSFAK WEEVFHDPIL TAALTDRLTH KSHVVNMIGP SYRMRETQKW LENSHS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| istA |
IstA |
ISSau9 |
1338 |
4207-5544 |
- |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MTEEIVERLK GFIQDNEWKR KNNMSKQQMK KIDMYEKLQE EGYDIGYTTV RNFVNSEERR TKEVYIRQRY SAAWEVEFDW GEVKLVIDGK QKSYSLAVFT
LAYSNYRFAL LYESETMICI QDAHTKLIDH LGFVPSVFTY DNMRTVVKSF VGTDRKITDG MINLSNYYEF RIRLCEPRKG NQKGHVERSV EVVRRKAFSY
DIAFPSLEDA QKRLAQTILS LNKRIHHEKK LAHIELKDQE KVAAAQEALP LPFDVSEVVE CRVDKYSTVT IKQNRYSVPE GHVGAWIRAK VSADSVRLFI
EGEFVAEHRR NWGVHQWEMD LYHYIKTFTK KKGALAQSEC LSQAPNQIKK LFENHYIGKE KDFLELLLYV REKNQWDNVM AAVRQIETKG LGDITTEKLI
FLSEQTDLVP AVPLHPDETV EQALQNIKAF SAMFNQVDEG VLEHG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| lsaB (ARO:3003111) |
LsaB |
TnSau9 |
1479 |
6027-7505 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target protection (ARO:0001003) |
| Target: | macrolide antibiotic (ARO:0000000)||tetracycline antibiotic (ARO:3000050)||lincosamide antibiotic (ARO:0000017)||pleuromutilin antibiotic (ARO:3000670)||phenicol antibiotic (ARO:3000387)||oxazolidinone antibiotic (ARO:3000079)||streptogramin antibiotic (ARO:0000026) |
| Sequence Family: | ABC-F ATP-binding cassette ribosomal protection protein (ARO:3004469) |
| Comment: | ATPase component of ABC transporters with duplicated ATPase domains |
Protein Sequence:
|
MSMIHVQNLT FSYPSSFDNI FEDVSFQIDT DWKLGFIGRN GRGKTTLFNL LLDKFEYRGK IISSVDFNYF PYPVEDKSKY THEILEEICP QAEDWEFLRE
IAYLNVDAEA MYRPFETLSN GEQTKVLLVA LFLNEGQFLL IDEPTNHLDT EARKTVSNYL RKKKGFILIS HDRNFLDGCV DHILSINRAD IEVQSGNYSS
WKLNFDRQQG HEQATNERLQ KDIGRLEQST KRSAGWSNRV EASKNGTTNS GSKLDKGFVG HKAAKMMKRS KNLEARQQKS IEEKSKLLKN IEKTESLQFE
PVEYKSKELI QLTDVSVIYD GQVVNKPISF NVEQGDRIVL DGKNGSGKSS ILKLILGDPI QYTGTLNTGS NLITSYVQQD TSHLKGMLAD FIEENEIDES
LFKAILRKLD FDRVQFEKDI SHYSGGQKKK LLIAKSLCEK AHLYIWDEPL NFIDIYSRMQ IEELIQTFNP TMVFVEHDQT FQETISTKII KI
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| cfrA (ARO:3003441) |
CfrA |
TnSau9 |
1050 |
9012-10061 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001) |
| Target: | phenicol antibiotic (ARO:3000387)||oxazolidinone antibiotic (ARO:3000079)||streptogramin antibiotic (ARO:0000026)||lincosamide antibiotic (ARO:0000017)||pleuromutilin antibiotic (ARO:3000670) |
| Sequence Family: | Cfr 23S ribosomal RNA methyltransferase (ARO:3000202) |
Protein Sequence:
|
MNFNNKTKYG KIQEFLRSNN EPDYRIKQIT NAIFKQRISR FEDMKVLPKL LREDLINNFG ETVLNIKLLA EQNSEQVTKV LFEVSKNERV ETVNMKYKAG
WESFCISSQC GCNFGCKFCA TGDIGLKKNL TVDEITDQVL YFHLLGHQID SISFMGMGEA LANRQVFDAL DSFTDPNLFA LSPRRLSIST IGIIPSIKKI
TQEYPQVNLT FSLHSPYSEE RSKLMPINDR YPIDEVMNIL DEHIRLTSRK VYIAYIMLPG VNDSLEHANE VVSLLKSRYK SGKLYHVNLI RYNPTISAPE
MYGEANEGQV EAFYKVLKSA GIHVTIRSQF GIDIDAACGQ LYGNYQNSQ
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| istB |
IstB |
ISSau9 |
771 |
10604-11374 |
- |
| Class: | Accessory Gene |
| Sub Class: | ATPase Transposition Helper |
Protein Sequence:
|
MKECLNMDKK QSVIDLCKEL RLPGIRELVE EDVAFQETTP AIDLLHTVLT KEKNDRWIRS KSTRIRRANF PEKKLLEEID TRALPTDAQQ KLPNLQTLDF
IKAGQNVILT GSPGTGKSHL AIGLGVEACL AGYKVYFASV SSLINQLKES RSERTLRSFE LRFEKYDLVI IDELGYISFD KEGAELLFTH LSLRAGRSST
IITSNLSFAK WEEVFHDPIL TAALTDRLTH KSHVVNMIGP SYRMRETQKW LENSHS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| istA |
IstA |
ISSau9.1 |
1338 |
11349-12686 |
- |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
| Comment: | Has two amino acid changes relative to istA (ISSau9) |
Protein Sequence:
|
MTEEIVERLK GFIQDNEWKR KNNMSKQQMK KIDMYEKLQE ERYDIGYTTV RNFVNSEERR TKEVYIRQRY SAAWEVEFDW GEVKLVIDGK QKSYSLAVFT
LAYSNYRFAL LYESETMICI QDAHTKLIDH LGFVPSVFTY DNMRTVVKSF VGTDRKITDG MINLSNYYEF RIRLCEPRKG NQKGHVERSV EVVRRKAFSY
DIAFPSLEDA QKRLAQTILS LNKRIHHEKK LAHIELKDQE KVAAAQGALP LPFDVSEVVE CRVDKYSTVT IKQNRYSVPE GHVGAWIRAK VSADSVRLFI
EGEFVAEHRR NWGVHQWEMD LYHYIKTFTK KKGALAQSEC LSQAPNQIKK LFENRYIGKE KDFLELLLYV REKNQWDNVM AAVRQIETKG LGDITTEKLI
FLSEQTDLVP AVPLHPDETV EQALQNIKAF SAMFNQVDEG VLEHG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpC 3'-end |
N |
Tn558.1 |
102 |
13005-13106 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Helper |
| Sequence Family: | Tn554_family |
| Comment: | tnpC ORF interrupted by insertion of TnSau9 |
Protein Sequence:
|
DVLIKTLKSR IKALEEENER LKDQVQKLHG KLF
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| fla |
Fla |
Tn558 |
417 |
13389-13805 |
- |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Sequence Family: | flavodoxin |
Protein Sequence:
|
MKTLVIVSHP DMPNSRINKV WVEKAASYSN EITIHDLYRE YPDFIINVKR EQELVENHDN IIFQFPLYWY SSPSLLKKWI DEVIIYGWAY GSKGKRIFYN
RKLGLAISAG VKKGEFTSMG KNKHTLTQML TPFKSLCA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| fexA (ARO:3002704) |
FexA |
Tn558.1 |
1428 |
13983-15410 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic efflux (ARO:0010000) |
| Target: | phenicol antibiotic (ARO:3000387) |
| Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
Protein Sequence:
|
MKKDSKSKEM IQSEKRGSTR LLMMVLSLSV LVGAITADLV NPVLPLISKD LEASKSQVSW IVSGIALVLA IGVPIYGRIS DFFELRKLYI FAIMILASGS
LLCAIAPNLP LLVLGRMVQG AGMSAIPVLS IIAISKVFPQ GKRGGALGII AGSIGVGTAA GPIFGGVVGQ YLGWNALFWS TFLLAIMIVI GAYYALPTIK
PAESVGSNKN FDFIGGLFLG LTVGLLLFGI TQGETSGFSS FSSLTSLIGS VVALVGFIWR IVTAENPFVP PVLFNNKDYV NTVIIAFFSM FAYFAVLVFV
PLLVVEVNGL SSGQAGMILL PGGVAVAILS PFVGRLSDRF GDKRLIITGM TLMGLSTLFL STYASGASPL LVSVGVLGVG IAFAFTNSPA NNAAVSALDA
DKVGVGMGIF QGALYLGAGT GAGMIGALLS ARRDATEPIN PLYILDAMSY SDAFLAATGA ILIALIAGLG LKKRG
|
|
| Internal Transposable Elements (TE) |
|
|
| TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
| TnSau9-AM408573.1 |
TnSau9 |
Transposon |
3411-13004 |
9594 |
| ISSau9-AM086211 |
ISSau9 |
Insertion Sequence |
3411-5862 |
2452 |
| ISSau9.1-AM408573 |
ISSau9.1 |
Insertion Sequence |
10553-13004 |
2452 |
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| IRL |
ISSau9 |
5836-5862 |
ACCGAGTCAA AATTCAATTG TATATGT |
| IRR |
ISSau9 |
10553-10579 |
TGTATTTCGC AACTGAAAAT TGAGCCA |
|
| References |
|
|
Kehrenberg C, Aarestrup FM, Schwarz S. IS21-558 insertion sequences are involved in the mobility of the multiresistance gene cfr. Antimicrob Agents Chemother. 2007 Feb;51(2):483-7. doi: 10.1128/AAC.01340-06. Epub 2006 Dec 4. PubMed ID: 17145796
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