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Internal Transposable Elements | |
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Name: Tn5501.12 |
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Family: Tn3 Group: Tn3000 |
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Evidence of Transposition: no |
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Host |
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Host Organism: | Pseudomonas aeruginosa PA83 | Molecular Source: | plasmid unnamed1 |
Place of Origin: | Tubingen, Germany | Date of Isolation: | 2017 |
| | Other Geographic Information: | clinical isolate from patient with P. aeruginosa bloodstream infection Department of Hematology of the hospital of Universityof Tubingen |
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Map |
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Terminal Inverted Repeats (IR) |
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IRL (Length: 38 bp) | | GGGGATGTAAGCCGGAACCCCAGAAATTTCCGTCACCC |
IRR (Length: 38 bp) | | GGGGTTCTAAGCCAGAACCGCCGAAATTTCCGTCATCC |
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Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGATGTAA GCCGGAACCC CAGAAATTTC CGTCACCCTA GTTGGGTGGG CTCAACACTC GTGTCACCAG CTACCTTCTG GAGAATCGAG CTCGGCCATC 100
CCTCCCTGGA CGGGCATCGC TCGACGATGT TCAACGGCTC CCTCACGGGG CCGTCGTTTT GTGGGGGCTA TTCCATCCAC AAGTCGTCGA GGTTCTTGAA 200
GTTCCAGAGC GTCGGGTCTT CGGGGCCAGT GATACTGTCC TTGCAACTCG TGGCCGCCAG GTCGATGGTC TGCATCGGGA TCGGCTCTCT CGAGCGTAGC 300
GAGAAGAACA CGCGAACCTT GGGAGTCAGC AGTGATTCCA TTCCCGGCTC AACGACAACG GCCAGACGCT GAGAGGACAG GCGAACCAAG GAGCCGACGG 400
GGTAGATGCC CACGGCCTTG ACGAAGGCGT GGAAGATGCG TTTGTCGAAA TGGCCCTCCC ACTTGGCCAT CTGCCGCATC GCCGCGGACG GGTCCCACGG 500
CTTTTTGTAG GCTCGCTCCG ACGTCACGGC ATCATAGACG TCGCAGATTG CGCCCATGCG GGCCAGGAGT GAAATGGCGT CACCGGCCAA GCGATCCGGG 600
TAGCCGGTTC CGTCGATCTT CTCGTGATGG TGCAGGGCAA TGTCCACCAC CCCGGGCTCG GCCCCGCCTG CGCGCAGCAT CTTTGCGCCC TCCACAGGGT 700
GGCGCTTCAT GATGGCGAAC TCGGCATCGG TGAGCTTGCC TGGTTTGTTA AGCACTTCCA GCGGCATCGC GGCCTTGCCT AGGTCGTGCA TCAGTCCGCC 800
GATGCCAGCC AGGCGCGTTT GCTCCTCGTC TAGATCGAGA TGCCGGGCCA GCGATAGCAT CAGGGCGCAG ACGGCAACCG AGTGCAGGTA GGTGTAATCG 900
TCGTGCGTTT TGATGCGTGC GACGCTGATG AGGGCATGAG GTTGGCGCAG CACCGAGGCA GCGATTTCTC CGACCAGCGG CAACGTCGTG CTTGGGTCGA 1000
CGGCCTTGCC AAGCCGGGCT TCCTGGAACA TGTCCATGAC TTGGGACTTG GCCGCAAGAC AGAGTTTCCG TGCATAACAC ATTTCGCTCT CCATTGAGGT 1100
TGCGCCGTCA CTTTTCTTGC TTAGTGGACT AGACGGCAGA GATTGCTCCT CCGACAATTC TCTGGGCTCT GGGCTCTGGG CTCTGGGCTC TGGGCTCTGG 1200
GCTCTGGGCT CTCTGGGCTC TCTGGGCTCT CTGGGCTCTC TGGGCTCTCT GGGTCGACTT GGCTTTTGGC CAAGTCGACC CAGACCTCCC CGACGCCACA 1300
TTCTCGAATG GCAGAGAGAT CCTGAGGCTC GGTCAGCAGG AAGCTGCCGC GCCAGAATGG GTGTCGAACC CAAGAGCCGG CGAGCTTGTG GATGTACATG 1400
CCGAGACGAA GCTCGGATAC GGGAATGCGT TTTACCAACT TATTTTCCTT TCTGAGTTGG GTGGTTAGGC GTGCGCCGAG GCTGGCACCC AGCGGTAGAG 1500
CGGAGGTAAG GTCACGCCAA GATTCTTGGA TCAGCCGGAA CCGCCGAAAT TTCCGTCAGC CGATCAACAT GGCTTTGTCT CGCGCTCGGT CGATGCGTTC 1600
CTGCATCGCC TGCATGACTT CTTCGTGGGT GTACGACTTG GCGTTGGGGT CGTCGGCCTC TCGGAGAGCT TCCTCGACCT CGCGGGTCAT CCGCGCATAT 1700
TCTTCCGGCC ACAGCGCTTG CTCCATGCGC AGCGACGCCT GCCCAAGCAG GTGCAGCAGG CCGAACAGCC GCATGTCATT GGTGGCGACG ACGTGCTCTC 1800
GAATCCGCTC CTGGATCACC TCGCAGGCCC GATGCGCCTC TGGCGTCGCC GTGCCCTCGT AGCCGGCTGG GAGTTCTGCT TCTTCAGCGA TTCGCGCCCA 1900
AGCGATAGCC AGCGCCTCGA TGGTGGACAG GTTCATTTGC TCATCCACTT GCGCAGCAGA CGCTTTTTCA GGGAGGCGCG CTCTTGCGGA TTGCGTCCCT 2000
TGTGGTTGGC AATGCGATCC GCCGTGGCGG CCTGGCGCTT GATGGGCCAG TAGGAGCGGC CATCCTTACC CATCGACCAG ACGTTGCTGA CCTGGTTTTC 2100
CAGTAGAGGC AGATGGGCGC ATAGAGCTTC CGGCGACGCG CTGGCCAGCG CGGTGCGCTC GTGGGTTCGC CAGCGCTGAT GCCAGAGTTT CTTGTCCTCG 2200
CGCTCGCTAC GGCAGGTCGT GTGCCCAACG ATGGGCGTTT TGCGGCGGCT GCGGCTCATG ATGTGGTTGT CTCCAAGAAC ATTCAGGACA GGCTTTCTGG 2300
GTAGAGCGCC GTCAACCGGG ACAGGGTTTC TTGCACTTGT TCCAGCGAGG TCATCAGATG ATCAACCTGA TCCTGAAGAT CCACGGCGAG ATCAAATAGC 2400
TCAGCCACTC GGCTGCGTGA TCCCTCGTTG AACGCGGCCA TTGCCAGTTG ATGCAGCTTC AACAGGTCGG TGCGCAGTTG CGGAGGTGCG CCGTCTGCGC 2500
TGTCATTCAA ATCGCCGCGC AGCACGTCCA CGGCATCGAC TGCACGCAGC AGTGCCGTGG TATCGAAATT CTCGGGAGTC AGTTCGTCCC ATTCGTCGTC 2600
GGTGATGCGG GCTGCCATCA GGAGAGCTCC GATTAAGCGG TTGCGAGCGT TAGATGCCCG ATCGGCTCGG CTGCTGGCCG TACCTTGATT TCGATGTCGT 2700
AGCCGAGGCG ATTCAGACAA TCCATCAGCT TGCGTTCGGA TAGATTGGTG AAGTCGCCGC GCATCATGCC CGACACCTTC GGTTGCGGGA TGCCCATGCG 2800
TTTGGCCGCC GCTTGTTGAG TCAGCCCAAG GGCGCGCATG GCCCTCCTGA TCTCGACCAC CAGGCCGGTC TTGATCTTGA GCTTTTCAGC GTCAGGCAGT 2900
CCAAGGTCGG CAAAGACGTT GCCCGAGCTG CGCTGAACCT CGACGCCTTC AATGATTCGT TTTTGCATTT CGTAGCTCCT GTGCCAATAC CTCGGCCACC 3000
TTCAGCCGAG CGCGGATGAT GTCCATGTCG GCCTTTGGCG TGGCGATTCC GCTCTTGCTC TTCTTCTGGA AGCAGTGCAG GACGAACACC GCTTCCGCAA 3100
ACTTGACCGT GTATACCGCT CGATAGGTGC CGCCGGCATC GTCTTCGACG ACCTCCAGCA CGCCGGCACC ACCGAACCCC TTGAGCACCT TTGCTGCGTC 3200
ATCCTGATCG CCTATCTGCG CCAACGAGAG CGCGTAACCG AAACGGCGAC GCACGTCGGA CGGCAACGCC ATCAAATCCT TGTGGCTGCT CGCGATCCAT 3300
TCGAGCGGTT TTTCTTTGTT TGTCATGACG GAATTTTATA CCTGTTCAGG TAATGATGTA AACGCGGCAA CCTCAAGGAG GTGTCGTAAA ACATTTGTTT 3400
TTCGACAGGC CTTCAACGGT CCTCTGCACC AACCTCCGAG TGGCCGCAAA ATTGTGCGGA AAACTCTGTC GCCAGACGCT ACCATACGGA AACCTCGTCT 3500
TAATGGTTTT CCGCTTATGT TGGTAGGTTA CATGCGCGTG TCGTCGGACT CCGACCGCCA GAGCACGAAC TTGCAGCGCG ATGCGCTGCT CGCCGTCGGC 3600
GTCGATGCGC GGCATCTGTT CGAGGATCAT GCTTCCGGCG CGAAGGACGA CCGCGCGGGC CTGGCGCGGG CGCTCGAATT CGTTCGCCCT GGCGACGTGT 3700
TGGTCGTGTG GAAGCTCGAC CGGCTCGGCC GTTCGTTGTC GCACTTGCTC GCCATCGTGA CCTCGCTCAA GAAAAAGCAG GTGGCGTTCC GCTCGCTGAC 3800
GGAGAACCTG GATACCACGA CGCCCTCGGG CGAGTTTCTG TTCCAGGTGT TCGGCGCGCT CGCGCAGTAC GAACGCGCCT TGATCCAGGA ACGTGTCGTC 3900
GCCGGTCTGG CTGCCGCCCG CAAACGCGGC CGGATCGGCG GCCGGCCGCA GGCGATCACC GGCGAGAAGC TGGAGGCCAT CGTCGCTGCG CTCGATGGCG 4000
GCATGTCCAA GGCGGCGGTG TGCCGCAACT TCGGCGTCAA GCGAACCACG CTGATCGAGA CCCTGGCACG GGTTGGTTGG ACGGGCTCTC GTGGAGCGTC 4100
ATCGCGATGA CGACCAAGAG CGAACGATTG ACCGTCCTGT CGGACGCCGA GCAGGAAGCC CTGTACGGCC TGCCGGACTT CGACGACGCC CAGCGGCTGG 4200
AATACTTGGC GTTGACTGAA ACCGAACTGG CGCTCGCCAG CAGCCGGCCT GGTCTCCATG CCCAGGTCTA TTGCATCTTG CAGATCGGTT ACTTCAAGGC 4300
CAAGCATGCC TTCTTCCGCT TCGACTGGAG TGAGGTCGAG CACGATTGCG CCTTCGTGCT GAGCCGCTAC TTCCACGGCG AGTCCTTCGA GCACAAGCCA 4400
ATCTCCAAGC ACGAGCACTA CACCCAGCGC GAGTGGATTG CCGATCTGTT CGGCTACCGG CCGTGGGCGG CCGAGTTCCT GGCGCAGCTC GCGCAGCAGG 4500
CCGCGCAGAC CGTGCGGCGC GACGTGATGC CGGGGTTCAT CGCCGCCGAG CTGATCGTCT GGCTAAACGA GCACAAGATC ATCCGGCCCG GCTATACCAC 4600
CCTGCAAGAG CTGGTGAGCG AAGCCCTGTC CGCCGAGCGT CGGCGGCTGG CTGGCCTGCT GTCGGAAGTG TTGGACGAAT CGGCCAAGGC CGCGCTGGGT 4700
CGGCTTCTAG TGCGTGACGA CACCCTGTCG CAATTGGCGG CGCTCAAGCA GGACGCCAAG GACTTTGGCT GGCGTCAGAT GGCCCGCGAA CGCGAAAAGC 4800
GCGCCACGCT GGAGCCGCTG CACCGGATCG CCAAGGCGCT GCTGCCCAAG CTCGGCGTCT CGCAGCAGAA TCTGCTGTAC TACGCCAGCC TGGCGAACTT 4900
CTACACCGTC CACGATCTAC GCAACCTGAA GGCCGATCAG ACCTACCTCT ACCTGCTTTG CTATGCCTGG GTGCGCTACC GGCAGCTTTC CGACAACCTG 5000
GTCGATGCGA TGGCCTACCA CATGAAGCAG TTGGAGGACG AAAGCAGTGC GGGCGCAAAG CAATCCTTTG TCGCCGAGCA GGTGCGCCGT CAGCAAGACA 5100
CACCGCAGGT CGGCCGCCTG CTGTCGCTTT ACATCGACGA CAGCGTGCCC GATCCCACGC CGTTCGGCGA TGTGCGCCAG CGCGCCTACA AAATCATGCC 5200
CCGCGATACG CTGCAAACCA CCGCGCAGCG CATGAGCGTG AAGCCGGTGA GCAAGCTGGC TTTGCACTGG CAGGCGGTGG ACGGCCTGGC TGAGCGCATC 5300
CGCCGCCATC TTCGGCCGCT GTATGTCGCG CTCGACCTCG CTGGCACTGA TCCGGGCAGC CCGTGGCTCG TGGCGCTGGC CTGGGCCAAG GACGTGTTCG 5400
CCAAACAGCA GCGCCTATCG CAACGGCCGC TCGCCGAATG TCCAGCGGCC ACGCTGCCGA AACGCTTGCG ACCGTACCTG CTGACCTTCG ATGCCGATGG 5500
CAAGCCGACG GACCTGCATG CCGACCGCTA CGAGTTCTGG CTGTACCGCC AGGTCAGGAA GCGCTTCCAG TCGGGTGAAC TCTACCTCGA CGACAGCTTG 5600
CAGCACCGGC ATTTTTCCGA CGAGCTGGTT TCGCTGGATG AGAAGGCCGC CGTGCTGGCG CAGATCGACA TCCCGTTCCT GCGGCAGCCA CTCGATGCCC 5700
AGCTCGATGC GCTCGCGACC GAGCTGCGCG CTCAGTGGCT GGCCTTCAAC CGCGAGCTGA AGCAGGGCAA GCTGACGCAC CTAGAATACG ACAAGGACAC 5800
GCAGAAGCTG ACATGGCGCA AGCCCAAGGG CGAGAACCAG AAGGCGCGCG AGAAGGCGTT CTACGAGCAA CTGCCGTTCT GCGACGTGGC CGACGTGTTC 5900
CGCTTCGTCA ACGGCCAGTG CCAGTTCCTG TCGGCGCTGA CGCCTTTGCA GCCGCGCTAT GCGAAGAAGG TCGCCGACGC CGACAGCCTG ATGGCGGTCA 6000
TCATCGCGCA GGCGATGAAC CACGGCAACC AGGTCATGGC ACGCACCAGC GACATCCCGT ACCACGTGCT GGAGAGCGCC TACCAACAGT ACCTGCGCCA 6100
CGCAACGCTG CACGCGGCCA ACGACTGCAT CAGCAACGCC ATCGCCGCGC TGCCGATCTT CCCGTACTAC TCGTTCGACC TCGATGCACT GTACGGTGCC 6200
GTCGATGGTC AGAAATTCGG CGTCGAGCGG CCGACCGTGA AAGCGCGCCA CTCGCGCAAA TACTTTGGGC GCGGCAAGGG CGTGGTCGCC TACACGCTGC 6300
TGTGCAACCA CGTGCCGCTC AACGGCTACC TGATCGGCGC GCACGATTAC GAGGCCCATC ACGTGTTCGA CATCTGGTAT CGCAACACGT CGGACATCGT 6400
GCCGACCGCG ATCACCGGCG ACATGCACAG CGTCAACAAG GCCAACTTCG CTATCCTGCA CTGGTTCGGC CTGCGTTTCG AGCCGCGCTT CACCGACCTT 6500
GGCGATCAGT TGAAGGAACT CTACAGTGCC GACGATCCGG CGCTGTACGA TCAGTGCCTG ATCCGGCCGG CCGGGAGAAT CGACCGCGAT CTCATAGTCA 6600
GCGAGAAGCC GAACCTCGAC CAGATTGTCG CCACGCTCGG ACTGAAGGAG ATGACGCAGG GCACGCTGAT CCGCAAGCTA TGCACCTACA CCGCGCCGAA 6700
CCCCACGCGG CGCGCGGTGT TCGAGTTCGA CAAGCTCATC CGCAGCATCT ACACGCTGCG CTACCTGCGC GATCCGCAAC TGGAGCGCAA CGTTCACCGC 6800
TCACAGAACC GCATCGAGTC CTATCACCAG CTACGCTCAA CCATCGCCCA GGTCGGCGGC AAGAAGGAAT TGACCGGGCG CACCGACATC GAAATTGAGA 6900
TCAGCAACCA GTGCGCCAGG CTGATCGCCA ACGCGGTCAT CTTCTACAAC TCGGCCATCC TCTCGCGGCT GCTGATGAAG TACGAGGCGA GCGGCAACGC 7000
CAAGGCGCAC GCTCTCCTGA CCCAGATATC GCCGGCGGCC TGGCGGCACA TCCTGCTGAA CGGGCATTAC ACCTTCCAGA GCGACGGCAA GATGATCGAC 7100
CTGGATGCGC TCGTGGCGGG GCTGGAGCTG GGATGACGGA AATTTCGGCG GTTCTGGCTT AGAACCCC
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Recombination Sites |
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Name |
Coordinates |
Gene |
Sequence |
res |
3342-3509 |
168 |
CTGTTCAGGT AATGATGTAA ACGCGGCAAC CTCAAGGAGG TGTCGTAAAA CATTTGTTTT TCGACAGGCC TTCAACGGTC CTCTGCACCA ACCTCCGAGT GGCCGCAAAA TTGTGCGGAA AACTCTGTCG CCAGACGCTA CCATACGGAA ACCTCGTCTT AATGGTTT |
res_site_I |
3342-3371 |
30 |
CTGTTCAGGT AATGATGTAA ACGCGGCAAC |
res_site_II |
3379-3409 |
31 |
AGGTGTCGTA AAACATTTGT TTTTCGACAG G |
res_site_II |
3441-3484 |
44 |
TGGCCGCAAA ATTGTGCGGA AAACTCTGTC GCCAGACGCT ACCA |
res_site_III |
3485-3509 |
25 |
TACGGAAACC TCGTCTTAAT GGTTT |
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ORFs |
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Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
rpfG |
Tn5501.12 |
168-1301 |
Passenger Gene |
Other |
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pDK1_p018 |
Tn5501.12 |
1556-1948 |
Passenger Gene |
Hypothetical |
- |
pDK1_p017 |
Tn5501.12 |
1933-2259 |
Passenger Gene |
Hypothetical |
- |
WP_000741275.1 |
Tn5501.12 |
2316-2618 |
Passenger Gene |
Hypothetical |
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HTH_37 |
Tn5501.12 |
2633-2968 |
Passenger Gene |
Antitoxin |
- |
Gp49 |
Tn5501.12 |
2949-3326 |
Passenger Gene |
Toxin |
- |
tnpR |
Tn5501.12 |
3532-4110 |
Accessory Gene |
Resolvase |
+ |
tnpA |
Tn5501.12 |
4107-7136 |
Transposase |
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+ |
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
rpfG |
RpfG |
Tn5501.12 |
1134 |
168-1301 |
- |
Class: | Passenger Gene |
Sub Class: | Other |
Comment: | variant of Tn4662a metal dependent phosphohydrolases with conserved HD motif |
Protein Sequence:
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MWRRGGLGRL GQKPSRPREP REPREPREPR EPRAQSPEPR AQSPEPRELS EEQSLPSSPL SKKSDGATSM ESEMCYARKL CLAAKSQVMD MFQEARLGKA VDPSTTLPLV GEIAASVLRQ PHALISVARI KTHDDYTYLH SVAVCALMLS LARHLDLDEE QTRLAGIGGL MHDLGKAAMP LEVLNKPGKL TDAEFAIMKR HPVEGAKMLR AGGAEPGVVD IALHHHEKID GTGYPDRLAG DAISLLARMG AICDVYDAVT SERAYKKPWD PSAAMRQMAK WEGHFDKRIF HAFVKAVGIY PVGSLVRLSS QRLAVVVEPG MESLLTPKVR VFFSLRSREP IPMQTIDLAA TSCKDSITGP EDPTLWNFKN LDDLWME
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
pDK1_p018 |
PDK1_p018 |
Tn5501.12 |
393 |
1556-1948 |
- |
Class: | Passenger Gene |
Sub Class: | Hypothetical |
Protein Sequence:
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MDEQMNLSTI EALAIAWARI AEEAELPAGY EGTATPEAHR ACEVIQERIR EHVVATNDMR LFGLLHLLGQ ASLRMEQALW PEEYARMTRE VEEALREADD PNAKSYTHEE VMQAMQERID RARDKAMLIG
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
pDK1_p017 |
PDK1_p017 |
Tn5501.12 |
327 |
1933-2259 |
- |
Class: | Passenger Gene |
Sub Class: | Hypothetical |
Protein Sequence:
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MSRSRRKTPI VGHTTCRSER EDKKLWHQRW RTHERTALAS ASPEALCAHL PLLENQVSNV WSMGKDGRSY WPIKRQAATA DRIANHKGRN PQERASLKKR LLRKWMSK
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
WP_000741275.1 |
WP_000741275.1 |
Tn5501.12 |
303 |
2316-2618 |
- |
Class: | Passenger Gene |
Sub Class: | Hypothetical |
Protein Sequence:
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MAARITDDEW DELTPENFDT TALLRAVDAV DVLRGDLNDS ADGAPPQLRT DLLKLHQLAM AAFNEGSRSR VAELFDLAVD LQDQVDHLMT SLEQVQETLS R
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
HTH_37 |
HTH_37 |
Tn5501.12 |
336 |
2633-2968 |
- |
Class: | Passenger Gene |
Sub Class: | Antitoxin |
Sequence Family: | HTH_37 (Pfam:PF13744) |
Protein Sequence:
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MQKRIIEGVE VQRSSGNVFA DLGLPDAEKL KIKTGLVVEI RRAMRALGLT QQAAAKRMGI PQPKVSGMMR GDFTNLSERK LMDCLNRLGY DIEIKVRPAA EPIGHLTLAT A
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
Gp49 |
Gp49 |
Tn5501.12 |
378 |
2949-3326 |
- |
Class: | Passenger Gene |
Sub Class: | Toxin |
Target: | ribosome associated mRNA |
Sequence Family: | Gp49 (Pfam:PF05973) |
Protein Sequence:
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MTNKEKPLEW IASSHKDLMA LPSDVRRRFG YALSLAQIGD QDDAAKVLKG FGGAGVLEVV EDDAGGTYRA VYTVKFAEAV FVLHCFQKKS KSGIATPKAD MDIIRARLKV AEVLAQELRN AKTNH
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpR |
TnpR |
Tn5501.12 |
579 |
3532-4110 |
+ |
Class: | Accessory Gene |
Sub Class: | Resolvase |
Transpoase Chemistry: | Serine |
Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
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MRVSSDSDRQ STNLQRDALL AVGVDARHLF EDHASGAKDD RAGLARALEF VRPGDVLVVW KLDRLGRSLS HLLAIVTSLK KKQVAFRSLT ENLDTTTPSG EFLFQVFGAL AQYERALIQE RVVAGLAAAR KRGRIGGRPQ AITGEKLEAI VAALDGGMSK AAVCRNFGVK RTTLIETLAR VGWTGSRGAS SR
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpA |
TnpA |
Tn5501.12 |
3030 |
4107-7136 |
+ |
Class: | Transposase |
Transpoase Chemistry: | DDE |
Protein Sequence:
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MTTKSERLTV LSDAEQEALY GLPDFDDAQR LEYLALTETE LALASSRPGL HAQVYCILQI GYFKAKHAFF RFDWSEVEHD CAFVLSRYFH GESFEHKPIS KHEHYTQREW IADLFGYRPW AAEFLAQLAQ QAAQTVRRDV MPGFIAAELI VWLNEHKIIR PGYTTLQELV SEALSAERRR LAGLLSEVLD ESAKAALGRL LVRDDTLSQL AALKQDAKDF GWRQMARERE KRATLEPLHR IAKALLPKLG VSQQNLLYYA SLANFYTVHD LRNLKADQTY LYLLCYAWVR YRQLSDNLVD AMAYHMKQLE DESSAGAKQS FVAEQVRRQQ DTPQVGRLLS LYIDDSVPDP TPFGDVRQRA YKIMPRDTLQ TTAQRMSVKP VSKLALHWQA VDGLAERIRR HLRPLYVALD LAGTDPGSPW LVALAWAKDV FAKQQRLSQR PLAECPAATL PKRLRPYLLT FDADGKPTDL HADRYEFWLY RQVRKRFQSG ELYLDDSLQH RHFSDELVSL DEKAAVLAQI DIPFLRQPLD AQLDALATEL RAQWLAFNRE LKQGKLTHLE YDKDTQKLTW RKPKGENQKA REKAFYEQLP FCDVADVFRF VNGQCQFLSA LTPLQPRYAK KVADADSLMA VIIAQAMNHG NQVMARTSDI PYHVLESAYQ QYLRHATLHA ANDCISNAIA ALPIFPYYSF DLDALYGAVD GQKFGVERPT VKARHSRKYF GRGKGVVAYT LLCNHVPLNG YLIGAHDYEA HHVFDIWYRN TSDIVPTAIT GDMHSVNKAN FAILHWFGLR FEPRFTDLGD QLKELYSADD PALYDQCLIR PAGRIDRDLI VSEKPNLDQI VATLGLKEMT QGTLIRKLCT YTAPNPTRRA VFEFDKLIRS IYTLRYLRDP QLERNVHRSQ NRIESYHQLR STIAQVGGKK ELTGRTDIEI EISNQCARLI ANAVIFYNSA ILSRLLMKYE ASGNAKAHAL LTQISPAAWR HILLNGHYTF QSDGKMIDLD ALVAGLELG
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Internal Repeat Elements |
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Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
IRL |
Tn4662a |
1-38 |
GGGGATGTAA GCCGGAACCC CAGAAATTTC CGTCACCC |
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References |
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Dößelmann B, Willmann M, Steglich M, Bunk B, Nübel U, Peter S, Neher RA, ORCID: 0000-0003-2525-1407. Rapid and Consistent Evolution of Colistin Resistance in Extensively Drug-Resistant Pseudomonas aeruginosa during Morbidostat Culture. Antimicrob Agents Chemother. 2017 Aug 24;61(9):e00043-17. doi: 10.1128/AAC.00043-17. Print 2017 Sep. PubMed ID: 28630206
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