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Internal Transposable Elements | |
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Internal Repeats | |
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| Name: Tn5501.11 |
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| Family: Tn3 Group: Tn3000 |
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| Evidence of Transposition: yes |
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| Host |
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| Host Organism: | Alicycliphilus denitrificans BC | Molecular Source: | plasmid pALIDE02 |
| Place of Origin: | Korea | Date of Isolation: | 2011 |
| | Other Geographic Information: | isolated from a stable benzene-degrading chlorate-reducing enrichment culture 2008 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 38 bp) |  | GGGGTTCTAAGCCGGAACCGCCGAAAATTCCGTCAGCC |
| IRR (Length: 38 bp) | | GGGGTTCTAAGCCGGAACCGCCGAAATTTCCGTCATCC |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTTCTAA GCCGGAACCG CCGAAAATTC CGTCAGCCGA TCAACGTGGC TTGTCCCTCG CCCGGTCGAT GGGGTAGACC CAACAGTCGT GTCACTAGCC 100
GCCATTTCGA TCACGGCAAT GCCAGCCGGA TGTCACGTCC AGATTGTTCC GGTCTGGACG GGGCCGACTG ACGTCTCGGA TGGCGGGTGG CATACAACTG 200
CTGTGACTCC TGCAGGGGGG CGGCTGCCTG ACCGGACGGC GAGCATCAAC CCATCTCACG TATTCGTCAT GTCAGCTTTG ACACTGCGCA CGCGACGGCA 300
CCCGACCCGT TGCGGCCGTT CAAGACAATC GTGGCGCAAC AGCAGGTATC TGGCTTTAGC TGCCGTATGC CGTCACATAT GACGTTGTAG GCGCCATCTG 400
CTTTTTACCT CGGCCAAAGA ATCATCTGGG TGCACCGAAA GAGTGCCAAT TTGCGACCAC TGGCTTCGTC AGTTACCTCA GCATCCCAGA CCTGGGTCGT 500
TCGACCGAGA TGTTGTGCTG TTGCGACACA GGCCACGGTG CCTTCGGTTA CTGTTCCGAG ATGATTGCTT TTTAGTTCTA TCGTGGTGAA GGACTGAGCA 600
CCATCCGGCA AATGGGCAAT GGTCGCGTAG CCGCAACTGG TATCGGCAAG GGCAACCACG CTTGCCGCGT GGAGAAATTC ATTAGGCGCA ATGTGCAATT 700
TCTGAATGGG CATTCGGCTG CGTAACACAT TTGGCTGGAG GTCGATGACC TGAATCCCCA GGTATCCCGG GAGATATTCC TTGCCACGCT CGTTCAGAGT 800
TTCAAGGCTG ACATCGCTTC TCAGTTTGCT CATTTAATTA TCCTCATAGT GATCCAGTCA ACCTCATCGA GTATAGCAGG ACGTCGGTTT CATACGAAGC 900
AACACTGACC TAACTGAGTA AGCAGGTAAC CTGACAGCTT CCAAATTCAA GCACCCACTC CAGTGGCATC TTCCCCAAAT CACTGATCGG CCGCTTCTGG 1000
CCGCCTTGTT AACGGCGGTC GATTCCCGCA CAAATCCGGC GTCCACCGCC GGCACGGCAC AGCATGACCT TGATCTGGTG AGCGGATAGC GGCTGTTTGC 1100
TTGATGGGGT CAGGGGCGTT GGAAGGCGCC CGTAGGGCGA CTGGAAACGC CCCTGACCCC GGCGCGCCGA TGGCGGGCGG GGTGTTCGTG CAATCGGGAG 1200
GGAGGGCGTT TGGCACCCGA GTGGCCGATG CGCGCACAAT CGGGCTCGGC CTGTGGCAAC GCAGGCGCGA CACCGGCTCA AACCGCCAAG TCATCCCCAG 1300
TGTCGCGCCC CACACCCGCG CAAGGCTGCG CGGTCGTTGC GCCCGTAGTC TTTCACGAAG TGGGCGCTGG CGTCGAGTCT CCCACGGGCC TCAAGGCCCA 1400
TGGAGTCGAC CGGACGACGC TATCTCTGTG CCGCGTGCCG CGCGGCAGTG CTGATCTGCA GCCACTGTGA TCGGGGGCAG CGCTATTGCG CCGCCGGCTG 1500
CGCCCAGCGT GCCCGCGCGG CCTCGCTGCG GGCAGCCGGC ACGCGCTACC AGGCGAGCTT TGCGGGGCGC CTGGCGCACG CGCAACGCCA GCGCCGCTAC 1600
CGCGCGCGAC GCCAGGAAGT GACGCATCAG GGTTCCCCGC CGCCGGCCCC GCCTGTTGAA GTAAGGACCG CGCCGACCGT GCCCGAGTCC GTACCGTCCG 1700
CGAGCGGGCA GTGCCACCTG TGCCACCGCG CACTGTCCCC GTTCGTGCGT CAGGACTTCC TGCACTCCCC GGTTCGGCGC CCCTGTCCGC GATCCGAACG 1800
GAGTCCGCCC CGCCATGGCC CTGTCCCCTG AACACGAAGC GCAGATCCTG CGCTACTACC ACGCCGAGCG CTGGCGCATC GGCACCATCG CCGTGCAGCT 1900
CGGGCTGCAC CGCGACACCG TCGCGCGCGT GCTCGCCCAG GCCGGCCTGC CCCGGCACGG CCCCGTGCAG CGCGCCTCGG CGATCGACCC CTATCTGCCC 2000
TTCCTCCACG AGACGCTCGC GCAGTTTCCG CGCCTTACGG CCGCGCGGCT CTACGACATG GTGCGCGCAC GCGGTTACCC CGGGCGCCCC GATCACTTCC 2100
GCCACCTCAT CGCCCGCCAC CGCCCGCGCC CGAGCGCCGA GGCCTACCTG CGGCTACGCA CCCTGCCCGG CGAGCAGGCC CAGGTCGACT GGGGGCACTT 2200
CGGGCACCTG ACGATCGGGC GCGCACGCCG TCCGCTGATG GCCTTCGTCA TGGTGCTGTC GTGGTCGCGC CAGATCTATC TGCGCTTCTT CCTCGATGCG 2300
CGCATGGAGA ACTTCCTGCG CGGCCATGTC GGCGCCTTCG AGTGCTGGGG CGCGGTGCCG CGCATCGCCC TCTACGACAA TCTGAAGAGC GCGGTGCTCG 2400
AGCGTTGCGG CAACGCGATC CGCTTCCACC CGACCCTGCT CGCGCTCGCC GGCCACTACC GCTTCGAGCC GCGCCCGGTG GCGGTGGCGC GTGGCAACGA 2500
GAAGGGGCGC GTCGAGCGCG CGATCCGCTA CGTGCGCGAG GCCTTCTTCG CCGGATGCGC CTTCGCCGAT CTGGACGACC TCAACGCGCA GGCCCAGGCC 2600
TGGTGCGAGG GCGCCGCCGG CGCGCGGCGC TGCCCCGAGG ACGCCTCGAT GACGGTGGCC GAGGCCTTCG CGGCCGAGCG CGAGCGCCTG CTCGCGCGGC 2700
CCGAGACACC GTTTCCGACC GACGAGCTGC GCGCGGTGTC GGCGGGCAAG ACCCCGTACG TGCGCTTCGA TCTGAACGAC TACTCGATCC CCCACACCCA 2800
TGTACGGCGC ACCCTCACCG TGCTCGCCGA CCCGCTGCGG GTGCGCATCC TCGACGGCGA GGACGTCATC GCCACCCATG CGCGCAGCTA CGACCGCCGC 2900
CAGCAGATCG AGTGTGACGC CCACCTCGAG GCGCTCGTCG CACACAAGCA CGCGGCCAGT GCGCACCGCG CCACCGACCG CCTGACGGCG GCCGTGCCGG 3000
CCTGCCAGGC GCTGCTCGCC CAGGCCGCCG AGCGCGGCGA GCCGCTCGGG CGCACCACGC GCGCGCTCAC CGACCTGCTC GACCGCTACG GCGCGGGCGA 3100
ACTGGCCGTT GCCGTCGACG AGGCGCTCGC GCGCGGCGTG CCGCATCCCA ACGCGGTGCG CCTGGCGCTC GAGCGTCGGC GCGAGGCGCC CCCGCCGCTG 3200
GGCGTGCCGC TGCCCGCGCA TCTGAAGACG CGCGACGTCA CCGTGCGCGC CCACCCCTTG GCCGGCTACG ACCGCCTGCT GGAGGACGAC CATGACGACG 3300
CCTGAACCGC TGCTCGCGCG CGCCCGCGCG CTGCAACTGC ACGGCGTGGT GAGCCACTGG GCCGAGTGCG CCCAGGCCCC GTGGATCACC CCGCTCATCG 3400
AGTGGGAGGA GACCGAGCGC GCCCGACGCT CACTCGAGCG CCGGCTGCGC TGCGCGCACA TCGGCCGCTT CAAGCCGCTG GCCGACTTCG ACTGGCGCTG 3500
GCCCGAGCAG TGCGACCAGG CCGCCATCGC AGAGCTGATG ACGCTCGGCT TCCTCGAGAC CGCCACCAAC GCCTTGCTGG TCGGCCCCTC CGGGCTCGGG 3600
AAGACCACCA TCGCGCAGAA CATCGCCCAC CAGGCGGTGC TGCGCGGGCA CACCGTGCTC TTCACCACCG CCGGCCAGCT CCTGGGCGAG CTCGCCGCGC 3700
TCGACTCCGA CTCCGCGCTG CGCCGCCGCC TGCGCCACTA CGCCAGCCCC ACGCTCCTGG TGATCGACGA GGTCGGCTAC CTCTCCTACT CGAACCGTCA 3800
CGCCGATCTG CTCTTCGAGC TCATCAGCCG TCGCCACGAG AAAAAGAGCA CCCTCATCAC CACCAACAAG TCCTTTGCCG AATGGTCCGA GGTGTTCCCC 3900
AACGCCGCCT GCGTGGTCGC GCTCATCGAC CGCCTGATCC ATCACGCCGA GATCATCGCC CTCAAGGGCC CGTCCTGGCG CCACAAGGAA GCCCAGGAGC 4000
GCGCCGCCAC CAACGCCCGC AAACGCAAAT CCGCACGGAG TCCCGCATGA AGACCGACCA CCCGCCGTCC GGGCTGCTGC GCGGCCTGGA CCTGCTCATC 4100
GACGCCGACT GGACGCCCGA GCAGGCCCGG GCCGTGATCG AGCTGCTCGA CGATCTGCGC GAGCGCATCT GGGCGCACTA CGAGCTCGCC CTGTTCGAGC 4200
ACTACCGCCA GGACCGCCTC ACGCAGGCCG AGCTGCCGTT CGACGATCCG TCGTTCTGAT CGAGCCCCGC CCCCCAGCAC AACGAGGGCC GACGCGCGCG 4300
GCCCTCGTGC CGTTTACGGC GCCGCCGGCG CCCACTCGAC GACGCCGTTT AACGACGCCA GATTTGTGCG GAATCAGGGA GCCGGCAACA CGCCTGCCGC 4400
CGACCGCGGT CTGGCTCGAA AGCGGCCTGT CAACGCGCCG TTTCATCGTT GCCATGATCG TTTCTTAATC GCGCACAGGC GGCCACAGGC GGGCAGTATG 4500
AACCAGCGTC AGTATCCACA CCGTTTCGCC GTCGATCTGA TACACCAGGC GATAGCTTTC GTGCGGGATC AACTCGCGGG TCCCGGGAAT CTTTCCCGGC 4600
TTGCCCAGCA TGGGGTGCTG GATCAAGCGG GCGGCCGCGT CGCTGAAAAT CTCATCCATC CGGGCCGCCG CGCGCGAATT GTCGGCTGCG ATGTAGTCCC 4700
ACACATCGGC ACGGTCTTGC TGCGCTTCGG GCGTCCAAAC AACCCTCACG CCTGGCTCGC CACACTGGCA CGCCGTGCGG CGAATTCGGC CTCAACTTCA 4800
TCGTTCGACC GCCCCAATCC AGCGCGCATC GAAGCCCGGC CGGCTTCGAC CTTGCGGCGC AGGAACTCGT CGTACTCGCG CGACTCGCGC TGGCGCTGAA 4900
CGAACTCGCG CATCAGCTCG CGCAGCACTT GCGACGCCGG GCGATGGGCC GCCTCGGCTT CGGCCATAAA CTCGGCGCGC AACTCAGGCT CCAGCTTCAT 5000
CGTGAAAACG GCTTGTTTTG ACATGATCGG GGCCTCCTGC CACTTGATAC TAACAAAGTA TATACGCCGT CATTACTAAG CGCTATTCAC AGAACGCTGC 5100
AAGGCGGGCG TGCGCTAGGC CAAGGCCTGT CGGAAAACAT TTGTTTTTCG ACAGGCCTTC AACGATCCTC TGCACCAACC TCCGAGTGGC CGCAAAATTG 5200
TGCGGAAAAC TCTGTCGCCA GACGCTACCA TACGGAAACC TCGTCTTAAT GGTTTTCCGC TTATGTTGGT AGGTTACATG CGCGTGTCGT CGGACTCCGA 5300
CCGCCAGAGC ACGAACTTGC AGCGTGATGC GCTGCTCGCC GTCGGCGTCG ATGCGCGGCA TCTGTTCGAG GATCATGCTT CCGGCGCGAA GGACGACCGC 5400
GCGGGCCTGG CGCGGGCGCT CGAATTCGTT CGCCCTGGCG ACGTGTTGGT CGTGTGGAAG CTCGACCGGC TCGGCCGTTC GTTGTCGCAC TTGCTCGCCA 5500
TCGTGACCTC GCTCAAGGAA AAGCAGGTGG CGTTCCGCTC GCTGACGGAG AACCTGGATA CCACGACGCC CTCGGGCGAG TTTCTGTTCC AGGTGTTCGG 5600
CGCGCTCGCG CAGTACGAAC GCGCCTTGAT CCAGGAACGT GTCGTCGCCG GTCTGGCTGC CGCCCGCAAA CGCGGCCGGA TCGGCGGCCG GCCGCAGGCG 5700
ATCACCGGCG AGAAGCTGGA GGCCATCGTC GCTGCGCTCG ATGGCGGCAT GTCCAAGGCG GCGGTGTGCC GCAACTTCGG CGTCAAGCGA ACCACGCTGA 5800
TCGAGACCCT GGCACGGGTT GGTTGGACGG GCTCTCGTGG AGCGTCATCG CGATGACGAC CAAGAGCGAA CGATTGACCG TCCTGTCGGA CGCCGAGCAG 5900
GAAGCCCTGT ACGGCCTGCC GGACTTCGAC GACGCCCAGC GGCTGGAATA CTTGGCGTTG ACTGAAACCG AACTGGCGCT CGCCAGCAGC CGGCCTGGTC 6000
TCCATGCCCA GGTCTATTGC ATCTTGCAGA TCGGTTACTT CAAGGCCAAG CATGCCTTCT TCCGCTTCGA CTGGAGTGAG GTCGAGCACG ATTGCGCCTT 6100
CGTGCTGAGC CGCTACTTCC ACGGCGAGTC CTTCGAGCAC AAGCCAATCT CCAAGCACGA GCACTACACC CAGCGCGAGT GGATTGCCGA TCTGTTCGGC 6200
TACCGGCCGT GGGCGGCCGA GTTCCTGGCG CAGCTCGCGC AGCAGGCCGC GCAGACCGTG CGGCGCGACG TGATGCCGGG GTTCATCGCC GCCGAGCTGA 6300
TCGTCTGGCT AAACGAGCAC AAGATCATCC GGCCCGGCTA TACCACCCTG CAAGAGCTGG TGAGCGAAGC CCTGTCCGCC GAGCGTCGGC GGCTGGCTGG 6400
CCTGCTGTCG GAAGTGTTGG ACGAATCGGC CAAGGCCGCG CTGGGTCGGC TTCTAGTGCG TGACGACACC CTGTCGCAAT TGGCGGCGCT CAAGCAGGAC 6500
GCCAAGGACT TTGGCTGGCG TCAGATGGCC CGCGAACGCG AAAAGCGCGC CACGCTGGAG CCGCTGCACC GGATCGCCAA GGCGCTGCTG CCCAAGCTCG 6600
GCGTCTCGCA GCAGAATCTG CTGTACTACG CCAGCCTGGC GAACTTCTAC ACCGTCCACG ATCTACGCAA CCTGAAGGCC GATCAGACCT ACCTCTACCT 6700
GCTTTGCTAT GCCTGGGTGC GCTACCGGCA GCTTTCCGAC AACCTGGTCG ATGCGATGGC CTACCACATG AAGCAGTTGG AGGACGAAAG CAGTGCGGGC 6800
GCAAAGCAAT CCTTTGTCGC CGAGCAGGTG CGCCGTCAGC AAGACACACC GCAGGTCGGC CGCCTGCTGT CGCTTTACAT CGACGACAGC GTGCCCGATC 6900
CCACGCCGTT CGGCGATGTG CGCCAGCGCG CCTACAAAAT CATGCCCCGC GATACGCTGC AAACCACCGC GCAGCGCATG AGCGTGAAGC CGGTGAGCAA 7000
GCTGGCTTTG CACTGGCAGG CGGTGGACGG CCTGGCTGAG CGCATCCGCC GCCATCTTCG GCCGCTGTAT GTCGCGCTCG ACCTCGCTGG CACTGATCCG 7100
GGCAGCCCGT GGCTCGTGGC GCTGGCCTGG GCCAAGGACG TGTTCGCCAA ACAGCAGCGC CTATCGCAAC GGCCGCTCGC CGAATGTCCA GCGGCCACGC 7200
TGCCGAAACG CTTGCGACCG TACCTGCTGA CCTTCGATGC CGATGGCAAG CCGACGGGCC TGCATGCCGA CCGCTACGAG TTCTGGCTGT ACCGCCAGGT 7300
CAGGAAGCGC TTCCAGTCGG GTGAACTCTA CCTCGACGAC AGCTTGCAGC ACCGGCATTT TTCCGACGAG CTGGTTTCGC TGGAGGAGAA GGCCGCCGTG 7400
CTGGCGCAGA TCGACATCCC GTTCCTGCGG CAGCCACTCG ATGCCCAGCT CGATGCACTC GCGACCGAGC TGCGCTCTCA GTGGCTTGCC TTCAACCGCG 7500
AGCTGAAGCA GGGAAAGCTG ACGCACTTGG AATACGACAA GGACACGCAG AAGCTGACAT GGCGCAAGCC CAAGGGCGAG AACCAGAAGG CGCGCGAGAA 7600
GGCGTTCTAC GAGCAACTGC CGTTCTGCGA CGTGGCCGAC GTGTTCCGCT TCGTCAACGG CCAGTGCCAG TTCCTGTCGG CGCTGACGCC TTTGCAGCCG 7700
CGCTATGCGA AGAAGGTCGC CGACGCCGAC AGCCTGATGG CGGTCATCAT CGCGCAGGCG ATGAACCACG GCAACCAGGT CATGGCACGC ACCAGCGACA 7800
TCCCGTACCA CGTGCTGGAG AGCGCCTACC AACAGTACCT GCGCCACGCA ACGCTGCACG CGGCCAACGA CTGCATCAGC AACGCCATCG CCGCGCTGCC 7900
GATCTTCCCG TACTACTCGT TCGACCTCGA TGCACTGTAC GGTGCCGTCG ATGGTCAGAA ATTCGGCGTC GAGCGGCCGA CCGTGAAAGC GCGCCACTCG 8000
CGCAAATACT TTGGGCGCGG CAAGGGCGTG GTCGCCTACA CGCTGCTGTG CAACCACGTG CCGCTCAACG GCTACCTGAT CGGCGCGCAC GATTACGAGG 8100
CCCATCACGT GTTCGACATC TGGTATCGCA ACACGTCGGA CATCGTGCCG ACCGCGATCA CCGGCGACAT GCACAGCGTC AACAAGGCCA ACTTCGCTAT 8200
CCTCCACTGG TTCGGCCTGC GTTTCGAGCC GCGCTTCACC GACCTTGGCG ATCAGTTGAA GGAGCTCTAC AGTGCCGACG ATCCGGCGCT GTACGATCAG 8300
TGCCTGATCC GGCCGGCCGG GAGAATCGAC CGCGATCTCA TAGTCAGCGA GAAGCCGAAC CTCGACCAGA TCGTCGCCAC GCTCGGACTG AAGGAGATGA 8400
CGCAGGGCAC GCTGATCCGC AAGCTATGCA CCTACACCGC GCCGAACCCG ACGCGGCGCG CCGTGTTCGA GTTCGACAAG CTCATCCGCA GCATCTACAC 8500
GCTGCGCTAC CTGCGCGATC CACAACTGGA GCGCAACGTG CACCGCTCAC AGAACCGCAT CGAGTCCTAT CACCATCTAC GCTCGACCAT CGCCCAGGTC 8600
GGCGGCAAGA AGGAATTGAC CGGGCGCACC GACATCGAAA TTGAGATCAG CAACCAGTGC GCCAGGCTGA TCGCCAACGC GGTCATCTTC TACAACTCGG 8700
CCATCCTCTC GCGGCTGCTG ATGAAGTACG AGGTGAGCGG TAACGCCAAG GCGCACGCTC TCCTGACCCA GATATCGCCG GCGGCCTGGC GGCACATCCT 8800
GCTGAACGGG CATTACACCT TCCAGAGCGA CGGCAAGATG ATCGACCTGG ATGAGCTCGT GGCGGGGCTG GAACTGGGAT GACGGAAATT TCGGCGGTTC 8900
CGGCTTAGAA CCCC
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| res |
5125-5255 |
131 |
GCCTGTCGGA AAACATTTGT TTTTCGACAG GCCTTCAACG ATCCTCTGCA CCAACCTCCG
AGTGGCCGCA AAATTGTGCG GAAAACTCTG TCGCCAGACG CTACCATACG GAAACCTCGT
CTTAATGGTT T |
| res_site_I |
5125-5153 |
29 |
GCCTGTCGGA AAACATTTGT TTTTCGACA |
| res_site_II |
5187-5230 |
44 |
TGGCCGCAAA ATTGTGCGGA AAACTCTGTC GCCAGACGCT ACCA |
| res_site_III |
5231-5255 |
25 |
TACGGAAACC TCGTCTTAAT GGTTT |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| paaI family |
Tn5501.11 |
405-833 |
Passenger Gene |
Other |
- |
| czcA N-ter |
Tn5501.11 |
1104-1400 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| czcA C-ter |
Tn5501.11 |
1400-1831 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| istA |
Tn5501.11 |
1815-3305 |
Transposase |
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+ |
| istB |
Tn5501.11 |
3292-4050 |
Accessory Gene |
ATPase Transposition Helper |
+ |
| Alide_4453 |
Tn5501.11 |
4047-4259 |
Passenger Gene |
Hypothetical |
+ |
| parE |
Tn5501.11 |
4465-4749 |
Passenger Gene |
Toxin |
- |
| parD |
Tn5501.11 |
4746-5024 |
Passenger Gene |
Antitoxin |
- |
| tnpR |
Tn5501.11 |
5278-5856 |
Accessory Gene |
Resolvase |
+ |
| tnpA |
Tn5501.11 |
5853-8882 |
Transposase |
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+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| paaI family |
PaaI family |
Tn5501.11 |
429 |
405-833 |
- |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Comment: | PaaI family thioesterase |
Protein Sequence:
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MSKLRSDVSL ETLNERGKEY LPGYLGIQVI DLQPNVLRSR MPIQKLHIAP NEFLHAASVV ALADTSCGYA TIAHLPDGAQ SFTTIELKSN HLGTVTEGTV
ACVATAQHLG RTTQVWDAEV TDEASGRKLA LFRCTQMILW PR
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| czcA N-ter |
CzcA N-ter |
Tn5501.11 |
297 |
1104-1400 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Cobalt||Cadmium||Nickel |
| Comment: | heavy metal efflux pump, CzcA family || split by frameshift mutation||PMID:12829273 |
Protein Sequence:
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MGSGALEGAR RATGNAPDPG APMAGGVFVQ SGGRAFGTRV ADARTIGLGL WQRRRDTGSN RQVIPSVAPH TRARLRGRCA RSLSRSGRWR RVSHGPQGP
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| czcA C-ter |
CzcA C-ter |
Tn5501.11 |
432 |
1400-1831 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Cobalt||Cadmium||Nickel |
| Comment: | CzcA family heavy metal efflux pump || split by frameshift mutation||PMID:12829273 |
Protein Sequence:
|
MESTGRRYLC AACRAAVLIC SHCDRGQRYC AAGCAQRARA ASLRAAGTRY QASFAGRLAH AQRQRRYRAR RQEVTHQGSP PPAPPVEVRT APTVPESVPS
ASGQCHLCHR ALSPFVRQDF LHSPVRRPCP RSERSPPRHG PVP
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| istA |
IstA |
Tn5501.11 |
1491 |
1815-3305 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MALSPEHEAQ ILRYYHAERW RIGTIAVQLG LHRDTVARVL AQAGLPRHGP VQRASAIDPY LPFLHETLAQ FPRLTAARLY DMVRARGYPG RPDHFRHLIA
RHRPRPSAEA YLRLRTLPGE QAQVDWGHFG HLTIGRARRP LMAFVMVLSW SRQIYLRFFL DARMENFLRG HVGAFECWGA VPRIALYDNL KSAVLERCGN
AIRFHPTLLA LAGHYRFEPR PVAVARGNEK GRVERAIRYV REAFFAGCAF ADLDDLNAQA QAWCEGAAGA RRCPEDASMT VAEAFAAERE RLLARPETPF
PTDELRAVSA GKTPYVRFDL NDYSIPHTHV RRTLTVLADP LRVRILDGED VIATHARSYD RRQQIECDAH LEALVAHKHA ASAHRATDRL TAAVPACQAL
LAQAAERGEP LGRTTRALTD LLDRYGAGEL AVAVDEALAR GVPHPNAVRL ALERRREAPP PLGVPLPAHL KTRDVTVRAH PLAGYDRLLE DDHDDA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| istB |
IstB |
Tn5501.11 |
759 |
3292-4050 |
+ |
| Class: | Accessory Gene |
| Sub Class: | ATPase Transposition Helper |
Protein Sequence:
|
MTTPEPLLAR ARALQLHGVV SHWAECAQAP WITPLIEWEE TERARRSLER RLRCAHIGRF KPLADFDWRW PEQCDQAAIA ELMTLGFLET ATNALLVGPS
GLGKTTIAQN IAHQAVLRGH TVLFTTAGQL LGELAALDSD SALRRRLRHY ASPTLLVIDE VGYLSYSNRH ADLLFELISR RHEKKSTLIT TNKSFAEWSE
VFPNAACVVA LIDRLIHHAE IIALKGPSWR HKEAQERAAT NARKRKSARS PA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| Alide_4453 |
Alide_4453 |
Tn5501.11 |
213 |
4047-4259 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Hypothetical |
Protein Sequence:
|
MKTDHPPSGL LRGLDLLIDA DWTPEQARAV IELLDDLRER IWAHYELALF EHYRQDRLTQ AELPFDDPSF
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| parE |
ParE |
Tn5501.11 |
285 |
4465-4749 |
- |
| Class: | Passenger Gene |
| Sub Class: | Toxin |
| Target: | DNA gyrase |
| Sequence Family: | ParE_toxin (Pfam:PF05016) |
Protein Sequence:
|
VRVVWTPEAQ QDRADVWDYI AADNSRAAAR MDEIFSDAAA RLIQHPMLGK PGKIPGTREL IPHESYRLVY QIDGETVWIL TLVHTARLWP PVRD
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| parD |
ParD |
Tn5501.11 |
279 |
4746-5024 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antitoxin |
| Sequence Family: | parD (PDB:4Q2U) |
| Comment: | RelB |
Protein Sequence:
|
MSKQAVFTMK LEPELRAEFM AEAEAAHRPA SQVLRELMRE FVQRQRESRE YDEFLRRKVE AGRASMRAGL GRSNDEVEAE FAARRASVAS QA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
Tn5501.11 |
579 |
5278-5856 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MRVSSDSDRQ STNLQRDALL AVGVDARHLF EDHASGAKDD RAGLARALEF VRPGDVLVVW KLDRLGRSLS HLLAIVTSLK EKQVAFRSLT ENLDTTTPSG
EFLFQVFGAL AQYERALIQE RVVAGLAAAR KRGRIGGRPQ AITGEKLEAI VAALDGGMSK AAVCRNFGVK RTTLIETLAR VGWTGSRGAS SR
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn5501.11 |
3030 |
5853-8882 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MTTKSERLTV LSDAEQEALY GLPDFDDAQR LEYLALTETE LALASSRPGL HAQVYCILQI GYFKAKHAFF RFDWSEVEHD CAFVLSRYFH GESFEHKPIS
KHEHYTQREW IADLFGYRPW AAEFLAQLAQ QAAQTVRRDV MPGFIAAELI VWLNEHKIIR PGYTTLQELV SEALSAERRR LAGLLSEVLD ESAKAALGRL
LVRDDTLSQL AALKQDAKDF GWRQMARERE KRATLEPLHR IAKALLPKLG VSQQNLLYYA SLANFYTVHD LRNLKADQTY LYLLCYAWVR YRQLSDNLVD
AMAYHMKQLE DESSAGAKQS FVAEQVRRQQ DTPQVGRLLS LYIDDSVPDP TPFGDVRQRA YKIMPRDTLQ TTAQRMSVKP VSKLALHWQA VDGLAERIRR
HLRPLYVALD LAGTDPGSPW LVALAWAKDV FAKQQRLSQR PLAECPAATL PKRLRPYLLT FDADGKPTGL HADRYEFWLY RQVRKRFQSG ELYLDDSLQH
RHFSDELVSL EEKAAVLAQI DIPFLRQPLD AQLDALATEL RSQWLAFNRE LKQGKLTHLE YDKDTQKLTW RKPKGENQKA REKAFYEQLP FCDVADVFRF
VNGQCQFLSA LTPLQPRYAK KVADADSLMA VIIAQAMNHG NQVMARTSDI PYHVLESAYQ QYLRHATLHA ANDCISNAIA ALPIFPYYSF DLDALYGAVD
GQKFGVERPT VKARHSRKYF GRGKGVVAYT LLCNHVPLNG YLIGAHDYEA HHVFDIWYRN TSDIVPTAIT GDMHSVNKAN FAILHWFGLR FEPRFTDLGD
QLKELYSADD PALYDQCLIR PAGRIDRDLI VSEKPNLDQI VATLGLKEMT QGTLIRKLCT YTAPNPTRRA VFEFDKLIRS IYTLRYLRDP QLERNVHRSQ
NRIESYHHLR STIAQVGGKK ELTGRTDIEI EISNQCARLI ANAVIFYNSA ILSRLLMKYE VSGNAKAHAL LTQISPAAWR HILLNGHYTF QSDGKMIDLD
ELVAGLELG
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