Transposon
Name: Tn5393.8
Family: Tn3        Group: Tn163
Evidence of Transposition: no
 Host     

Host Organism:Salmonella enterica subsp. enterica serovar Kentucky Molecular Source:plasmid pCS0010A

 Map     



 Terminal Inverted Repeats (IR)     

IRL (Length: 81 bp)GGGGTCGTTTGCGGGAGAGGGCGAAATCCTACGCTAAGGCTTTGGCCAACGATATTCTCCGGTAAGATTGATGTGTTCCCA
IRR (Length: 40 bp)GGGGTCGTTTGCGGGAGGGGGCGGAATCCTACGCTAAGGC

 Sequence     
DNA SequenceLength  15861 
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTCGTTT GCGGGAGAGG GCGAAATCCT ACGCTAAGGC TTTGGCCAAC GATATTCTCC GGTAAGATTG ATGTGTTCCC AGGGGATAGG AGAAGTCGCT 100
TGATATCTAG TATGACGTCT GTCGCACCTG CTTGATCGCG GCCGCGATAG CTAGATCGCG TTGCTCCTCT TCTCCATCCG CGTTCCAAGC TGCGGAAAGG 200
CACCCATAAG CGTACGCCTG GTCGAGCAGG CGACGCGGAT CGACGTCCAG CGCACGAGAG AATGCGTCCG CCATCTGTGC AATGCGTCTA GGATCGAGAC 300
AAAGGTCGTC TCTGTCAGCC GGATCGTAGA ACATATTGGC GGCGCCAAAG CCCACTTCAC CGACCAGACC GACGGGATCT ATCACCAGCC AGCCGCGACT 400
GGAGAACATG ATGTTTTCAT GATGCAGATC GCCATGTAGC CCACGCAGTT CCGAGGCATT GCTCATCATT TGATCGGCTA TAATCGCCGC GTGGACGTAG 500
TCAGTTTGAC AACCTGCGTT TTGATCATCG CGCGCCCGCT GAAACAAAGC TGCAAAGCGA TCCCGGATCG GGAGAAGGGC AGAAGGCAGG GGTTCCTCAG 600
ATGCGGCATA CAGCTTCGCC ATTAGTTCCG CTGCAATTTC GGTCGCCTGG TAGTCGCCGT GCTCGGCAAC GATGTGAGAG AGCATTCGCT CCCCGGCATA 700
TTCGAGCAAC ATCAGATTGT TCTCACGACC GAGCAACCGG ACTGCTCCCC TCCCATTGCG CCATACCAGA TAGTCGGCCC CGCGCAGTTC ATCAGCAATG 800
TCTTCTATAG GTTTCAATCC CTTGACGATT GCAGGAGTCC CGTCTGGCAA TGAAACTTTC CAAACGAGGC TGGAAAAGGT GTCCGCAATG AGAACAGGTT 900
GCGAAACGTG CCAATGAGCA GGAAAAACAG GCGGCATGAA CATCAACCCC AAGTCAGAGG GTCCAATCGC AGATAGAAGG CAAGGCGTTC GCGGTCGGGG 1000
GCTTCGATCC CCAATACATT GAATAGGACA GCGAAGGCGC GCTCTGCTTC ATCTGGCGCT GCCCAGTTCT CTTCGGCGTT AGCAATCATG AGTGCCAAAT 1100
CGGCATAGCG ATCTGCTGTT CCGAGCCGCC CAAGGTCGAT CAGACCCGTG CATTGAAGAG TTTTAGGGTC CACCATGAAG TTCGGCATGC AGGGATCACC 1200
ATGGCAAACA ACCATATCGG TGCGCTCTTG GTCGAGCCGC ACCGGTAGCT CTCGTTCGAC ACGAGCCAAA AGATCGAGCT GCGGCGTACT CTTGTCCTCG 1300
TCCGGTAAGA AGTCGGGATT GACGGCATTG CGGGACACCA CATCAACGGC GCGTCCGAAC ATTCGCGACA GCCTGCGCTC AAACGGACAT TGATCAACCG 1400
ATAGGCTGTG AACAGCGCCA AGTTGCTGCC CCATTGACGG CCACGCTTTG AGCAAATCCG CTCCAGACAG ATCAGCCGCC GGTACTCCCG GAATTGCCGT 1500
TATCACCAAG CATGCACCCT CCTGTTCCTC CTGCCAGTTG ATGACCTCGG GGCAAGCCAC ACCTCGACCT TTGAGCCAAA TGAGGCGGTC ACGCTCTCCA 1600
GCGAGCTCAC CGCGGCGGGA AGCAGGTGCG ATTTTCGCGA AGGCATGCCC GTCACCACGT CGAAAAACAA AATCACCAGA TTCTCCGCCT CTGACAGGCA 1700
ACCAGTCAGA ATGCGATTCA CCAAAAAAAA TATTAGTTCG ATTCAATGGA GGTTCCTTCA GTTTTCTGAT GAAGCGCGGA GGTGGCTCAA CCTGCGAAAA 1800
GAAACGAGTT GCTATGGACT TGCACCGGTT GTGTTCCGGT CTATCTCTCA TTTTAAGCGG CTTTTTTCTC AAATGCCACC GGCGATTTCC AGCCGAGTGT 1900
TGAATGTCTT CGGCGTGGAT TATAAAAGCC ATTTATATAT TCGAAGATTG CAATCTCAAT ATCTCGCCTT GTTTGCCAGT GTCTGCGCCA AATCAACTCA 2000
GCCTTTAATG ATTTAAAGAA GCTTTCTACT GCGGAGTTAT CAAAACAATT GCCTTTCCCG CTCATGGACG GCAGCAATTG ATGTTTGAGC AGTAGCTTTT 2100
GATATTCATG AGCGCAATAT TGGCTCCCAC GGTCTGTGTG TTGAATACAA CCCGGTGGTG GTTTGCGTAA AGCCAACGCC ATATTCAGTG CCCTTAATGC 2200
AAGATCCTGC TTTAATCGAT CACCTGTTGC CCAGCCAATC ACGCGACGGG AATACAGGTC AAGGATAACA GCAAGATAGA CCCATCCTTC TCTGGTCCAA 2300
ACATAAGTGA TATCGCCTGC CCATTTCTGG TTGGGTGCGC TTGCGCTAAA GTCTTGTTTT AATAGGTTCG GTGCAATGTT GAAGGTATGA TGACTATCCG 2400
TTGTCCGTTT GAATTTACGC GTTCGAACAA CTGTAATGTT ATTCTGGCGC ATCAAACGTC CAACCCGACG CTGCCCAACC TGCAGGCCCA GCGCTTTCAA 2500
CTCTTCTGTC ATACGCGGCC TACCATAGCT CCCCAAACAC AACCGATGCT GCTCACGTAT ATGCGCTAGA AGTATAAGAT CACGACGCTG GCGCAGTGAT 2600
GGAGGACGGC GTTTCCATGC ACGTAAACCA CGATCTGTTA CGCCCATCAA ACGACATATG CGTGAACGTG AGAGAGAGCC ACGGTAATCC GTAATAAACT 2700
GAAATCTCAC AGCTTTTGTA CTGCGAAAAA TATTGCTGCC TTTTTTAATA TCTCCCTCTC CTCCCGAAGG ATACGGTTCT CTTTGCGTAA ACGTTCATTC 2800
TCACGCAGAA GATCAGTGTC TTGGGTAGGA ATTTTAGTTT CATCGGAAAT TGATGCGATC CATTTCCCAA GCGTGGAAAG CCCAATACTT AAATCTGACG 2900
CAACTTGACG GCGTGTTAAG CCACTAGTGA GTGCTATGCG AACTGCATCA CGCTTAAATT CATCACTATG CTTTAATGAC ATATATGGTC TCCTTGATAA 3000
CAAATAATGC TCTCAAAAAG ACCGGAACGA AACCGAGGCA AGTCCACTAC GTAAGTCCGA GAACATGCTT TCCATGGTCT CTGAGCTCGC CTTTGGGACC 3100
GACATATCGG TAGAGAGTGA CGCGCTCGAT GCCGAGTTCC TTGCAGAGAT CGGAAACTGA AGTATCGCGC TGGGCCATGG CGGCTTGCGC GAGACGCACC 3200
TGAGCTTTGG TGAGCGCGAA TTTTCGTCCG CCCTTGCGAC CGCGCGCTCT CGCGGAGGCG AGACCCGCCA TGGTGCGCTC TCGGATCAGA TCCCGCTCGA 3300
ACTCGGCCAA GGTGGCGAAG ATTCCGAACA CCATGCGACC GGACGCAGTC GTGGTGTCGA TCTGAGCGCC CTTTCCAGTC AGAACCCGCA GGCCGATCTT 3400
GCGGTCTGAC AGCTCCTTCA CCGTGTTGAC CAGATGGGCA AGCGATCGTC CGAGGCGATC GAGCTTCCAG ACCACCAGCA CATCGCCGTC ACGCAATGAC 3500
TTGAGGCAGG CAGTCAAGCC AGGGCGATCA TCACGACCGC CGGAAGCAAG ATCATCATAG ATATTGTCCC GTTCGACACC TGCGGCGCGC AAGGCGTCGT 3600
GCTGCAGGTC GAGAGACTGC GAGCCATCGG CTTTGGAGAC GCGGGCATAT CCGATCAGCA TGTATCACAA ACGTTGGTTT GAGGCGGCGC TTCGGCCACG 3700
ATTGCATTGA CCTCTGGAAA TGTATCTCAA CCAGCTTCAT AAACAAAGCG TCTTGAACGC TATCAGATTT TGAAAAAGGA ACATGTATGC CGCGTCGCGT 3800
CACTCTAACC GATCGGCAGA AAGACGCGCT GTTGCGCTTG CCGACTTCAC AGACGGATTT GCTCAAGCAC TATACGCTGA GTGATGAAGA CCTTGGGCAT 3900
ATCAGGCTCT GATGAATCCC CTAATGATTT TGGTAAAAAT CATTAAGTTA AGGTGGATAC ACATCTTGTC ATATGATCAA ATGGTTTCGC GAAAAATCAA 4000
TAATCAGACA ACAAGATGTG CGAACTCGAT ATTTTACACG ACTCTCTTTA CCAATTCTGC CCCGAATTAC ACTTAAAACG ACTCAACAGC TTAACGTTGG 4100
CTTGCCACGC ATTACTTGAC TGTAAAACTC TCACTCTTAC CGAACTTGGC CGTAACCTGC CAACCAAAGC GAGAACAAAA CATAACATCA AACGAATCGA 4200
CCGATTGTTA GGTAATCGTC ACCTCCACAA AGAGCGACTC GCTGTATACC GTTGGCATGC TAGCTTTATC TGTTCGGGCA ATACGATGCC CATTGTACTT 4300
GTTGACTGGT CTGATATTCG TGAGCAAAAA CGACTTATGG TATTGCGAGC TTCAGTCGCA CTACACGGTC GTTCTGTTAC TCTTTATGAG AAAGCGTTCC 4400
CGCTTTCAGA GCAATGTTCA AAGAAAGCTC ATGACCAATT TCTAGCCGAC CTTGCGAGCA TTCTACCGAG TAACACCACA CCGCTCATTG TCAGTGATGC 4500
TGGCTTTAAA GTGCCATGGT ATAAATCCGT TGAGAAGCTG GGTTGGTACT GGTTAAGTCG AGTAAGAGGA AAAGTACAAT ATGCAGACCT AGGAGCGGAA 4600
AACTGGAAAC CTATCAGCAA CTTACATGAT ATGTCATCTA GTCACTCAAA GACTTTAGGC TATAAGAGGC TGACTAAAAG CAATCCAATC TCATGCCAAA 4700
TTCTATTGTA TAAATCTCGC TCTAAAGGCC GAAAAAATCA GCGCTCGACA CGGACTCATT GTCACCACCC GTCACCTAAA ATCTACTCAG CGTCGGCAAA 4800
GGAGCCATGG GTTCTAGCAA CTAACTTACC TGTTGAAATT CGAACACCCA AACAACTTGT TAATATCTAT TCGAAGCGAA TGCAGATTGA AGAAACCTTC 4900
CGAGACTTGA AAAGTCCTGC CTACGGACTA GGCCTACGCC ATAGCCGAAC GAGCAGCTCA GAGCGTTTTG ATATCATGCT GCTAATCGCC CTGATGCTTC 5000
AACTAACATG TTGACTTGCG GGCGTTCATG CTCAGAAACA AGGTTGGGAC AAGCACTTCC AGGCTAACAC AGTCAGAAAT CGAAACGTAC TCTCAACAGT 5100
TCGCTTAGGC ATGGAAGTTT TGCGGCATTC TGGCTACACA ATAACAAGGG AAGACTTACT CGTGGCTGCA ACCCTACTAG CTCAAAATTT ATTCACACAT 5200
GGTTACGCTT TGGGGAAATT ATGAGGGGAT CTCTCAGTGC ATTGCCTCCA ATTCCCATAA TTTATTACGC CGATAATAAC TTGGTGTAAC CTTAAAAATG 5300
TACTTAAATC GACGTGTAAA AGATTGTTGG GAATCAAATT GATATTTTAA TGCGATCTCA AGGATAGTTT TTTTCGTCAA CCTCAACTCA ACAGCCGCTT 5400
TCGTCAAACG ACGAGCACGA ATATAGCTAG CCAGTGTGAC CCCTGTTACT TTTTTGAACA GCCGCTGAAA ATACCACTTG GTATAACCCG CTTTATTCGC 5500
CACATCATCA AGCAGTAAAG ACTGATCTAA ATTATGTTCA ATCCATAATA GAACATCTTT GATAACCGTT GTATGAAACT GCTTATCATC ATATCTTAAT 5600
TGGATGTTAT TAGCTTTATT TTGATAGCGA GAATGCTGTT CAATATACAT AAAATAACCT AAATGTTCTT AAGATTGTCA CGACCACATC ATCATGATAC 5700
CATAAACATA CTGACGGTAT GTTATTTTAA ATCTATCATG GAAAATAAAA ATCATCAACA AGAAAATTTT AAGAGTACCT ATCAATCACT GGTTAACTCA 5800
GCACGAATAT TGTTTGTTGA AAAAGGCTAT CAAGCTGTTT CAATAGATGA GATCTCGGGA AAAGCGTTGG TGACCAAAGG TGCCTTTTAT CATCACTTTA 5900
AAAATAAAAA ACAATTACTC AGTGCCTGTT ATAAGCAGCA ATTAATTATG ATTGATGCCT ACATCACAAC AAAAACTGAT TTAACAAATG GTTGGTCTGC 6000
CTTAGAAAGT ATATTTGAAC ATTATCTTGA TTATATTATT GATAATAATA AAAACCTTAT CCCTATCCAA GAAGTGATGC CAATCATTGG TTGGAATGAA 6100
CTTGAAAAAA TTAGCCTTGA ATACATTACT GGTAAGGTAA ACGCCATTGT CAGCAAATTG ATCCAAGAGA ACCAACTTAA AGCTTATGAT GATGATGTGC 6200
TTAAAAACTT ACTCAATGGC TGGTTTATGC ATATCGCAAT ACATGCGAAA AACCTAAAAG AGCTTGCCGA TAAAAAAGGC CAATTTATTG CTATTTACCG 6300
CGGCTTTTTA TTGAGCTTGA AAGATAAATA AAATAGATAG GTTTTATTTG AAGCTAAATC TTCTTTATCG TAAAAAATGC CCTCTTGGGT TATCAAGAGG 6400
GTCATTATAT TTCGCGGAAT AACATCATTT GGTGACGAAA TAACTAAGCA CTTGTCTCCT GTTTACTCCC CTGAGCTTGA GGGGTTAACA TGAAGGTCAT 6500
CGATAGCAGG ATAATAATAC AGTAAAACGC TAAACCAATA ATCCAAATCC AGCCATCCCA AATTGGTAGT GAATGATTAT AAATAACAGC AAACAGTAAT 6600
GGGCCAATAA CACCGGTTGC ATTGGTAAGG CTCACCAATA ATCCCTGTAA AGCACCTTGC TGATGACTCT TTGTTTGGAT AGACATCACT CCCTGTAATG 6700
CAGGTAAAGC GATCCCACCA CCAGCCAATA AAATTAAAAC AGGGAAAACT AACCAACCTT CAGATATAAA CGCTAAAAAG GCAAATGCAC TACTATCTGC 6800
AATAAATCCG AGCAGTACTG CCGTTTTTTC GCCCCATTTA GTGGCTATTC TTCCTGCCAC AAAGGCTTGG AATACTGAGT GTAAAAGACC AAGACCCGCT 6900
AATGAAAAGC CAACCATCAT GCTATTCCAT CCAAAACGAT TTTCGGTAAA TAGCACCCAC ACCGTTGCGG GAATTTGGCC TATCAATTGC GCTGAAAAAT 7000
AAATAATCAA CAAAATGGGC ATCGTTTTAA ATAAAGTGAT GTATACCGAA TTCGATTGCG TCTCAACCCC TACTTCGGTA TCTGTATTAT CACGTGTATT 7100
TTTGGTTTCA CGGAACCAAA ACATAACCAC AAGGAAAGCG ACAATATTTA GCAACGCAGC GATAAAAAAG GGACTATGCG GTGAAATCTC TCCTGCAAAA 7200
CCACCAATAA TAGGCCCCGC TATTAAACCA AGCCCAAAAC TTGCCCCTAA CCAACCGAAC CACTTCACGC GTTGAGAAGC TGAGGTGGTA TCGGCAATGA 7300
CCGATGCCGC GACAGCCCCA GTAGCTCCTG TGATCCCTGA AAGCAAACGG CCTAAATACA GCATCCAAAG CGCACTTGAA AAAGCCAGCA ATAAGTAATC 7400
CAGCGATGCG CCTATTAATG ACAACAACAG CACTGGGCGC CGACCAAATC GGTCAGACAT TTTTCCAAGC CAAGGAGCAA AGATAACCTG CATTAACGCA 7500
TAAAGTGCAA GCAATACGCC AAAGTGGTTA GCGATATCTT CCGAAGCAAT AAATTCACGT AATAACGTTG GCAAGACTGG CATGATAAGG CCAATCCCCA 7600
TGGCATCGAG TAACGTAATT ACCAATGCGA TCTTTGTCGA ACTATTCATT TCACTTTTCT CTATCACTGA TAGGGAGTGG TAAAATAACT CTATCAATGA 7700
TAGAGTGTCA ACAAAAATTA GGAATTAATG ATGTCTAGAT TAGATAAAAG TAAAGTGATT AACAGCGCAT TAGAGCTGCT TAATGAGGTC GGAATCGAAG 7800
GTTTAACAAC CCGTAAACTC GCCCAGAAGC TAGGTGTAGA GCAGCCTACA TTGTATTGGC ATGTAAAAAA TAAGCGGGCT TTGCTCGACG CCTTAGCCAT 7900
TGAGATGTTA GATAGGCACC ATACTCACTT TTGCCCTTTA GAAGGGGAAA GCTGGCAAGA TTTTTTACGT AATAACGCTA AAAGTTTTAG ATGTGCTTTA 8000
CTAAGTCATC GCGATGGAGC AAAAGTACAT TTAGGTACAC GGCCTACAGA AAAACAGTAT GAAACTCTCG AAAATCAATT AGCCTTTTTA TGCCAACAAG 8100
GTTTTTCACT AGAGAATGCA TTATATGCAC TCAGCGCTGT GGGGCATTTT ACTTTAGGTT GCGTATTGGA AGATCAAGAG CATCAAGTCG CTAAAGAAGA 8200
AAGGGAAACA CCTACTACTG ATAGTATGCC GCCATTATTA CGACAAGCTA TCGAATTATT TGATCACCAA GGTGCAGAGC CAGCCTTCTT ATTCGGCCTT 8300
GAATTGATCA TATGCGGATT AGAAAAACAA CTTAAATGTG AAAGTGGGTC TTAAAAGCAG CATAACCTTT TTCCGTGATG GTAACTTCAC GGTAACCAAG 8400
ATGTCGAGTT AACCACCCTT TAGATTCATA AAGCGAAAAT AATGCGGCTC CAACGTACCC ACCTAAATGG AAACGGCGTT CACTCCAATC TAAACACGCA 8500
CAACAGATTT TACGTGAATG TTTGGAAGGA ACGTCAATTC CCATTTCATG AAAATATTGA ATACCACTTA ATGTGATCAT TGAACCATTT TCAGTGATCC 8600
ATTGCTGTTG ACAAAGGGAA TCATAGATCT TAACGGCAAC TTCGCCAGCT AAATGATCAT AGCAAGTACG TGCTTTTCGT AAATGCACTG GCGTGGAAAC 8700
TTTGGCATGT ACGCCATGGT TTAAGGAGAT CCCCATCATA CTTTCCATCA ATTCAGCAAT ATCTTTTCCT GCTAGCCGAA AATAACGATG CTTGCCTTGA 8800
GCTACTACTG TGATTAGCTG GCAATCTAAT AATTTAGATA AATGACTGCT CGCCGTTGAA GCTGATATAT TCGCCACAGA ACTTAGCTCA GTGGCCGTCC 8900
AAGCTCGCCC ATCCATCAAA GCACTGAGTA TTTTAACTCG TGAAATGTCA GACATAGCCG CCCCTATCGC GGCTATTGAG GACTCAAAGG TAACCTCTTT 9000
TCGTATTAAA TTAGCCATCG CAAGTTCACT TTATTGCCCA AGGGAGCGTA ACAGATGCAG CCATACTATC ATTGTCCGTT ATTAATATCA GTTGGTTAGC 9100
ATGGTCACTG TATTGCACTA AAATATTAAT GTTATTCTCC GCCAATACTC GTGCTATTTC GCCAAGTTCC CCCGGTTTTT CCTGTTTTAA CTTACGAATT 9200
AATGGTGTCC GGATCGCAAG TACTAACAGT CCAGCTTGCT CTAGCGCTAT TTTAGCTTCC TTTCCTTGTT CAACAAGAAA ATGAGCATGG CATTCATCAC 9300
CAACCGTAAA TATCCCTCCC CCTTCCAATC CAATACCTTT ATTACCTAAT GTTTTTCCTA GTAATGCTAA TTGTCCTATT TGATTATCTA AAACAACGTG 9400
AACATCAAAC ATTATCCTTG TCCTTTTTAA ATGAATATTC GCGAGTAATA TGAGCAATAC TAATTTTGTA AAAATCAAAT ATTGACTCTC GCCCTTCTTG 9500
TTGAGCTTTC GCATGTAAAA CATGATTTTT CCATTGCAGA ACTGCGTATT CGTTTTCCCA CCAAGATAGC GATAACATTT TTCCTTCTGT AGCTAGACTT 9600
TGAAAACGTT CAATTGAAAT AAAACCAGCT ACATGACTTA ATAGTGGTCT TAACTCCTCA GCTAAAGTCA AATAGCGAGT TTGTTGGTCG GGTTGTATTT 9700
GCACCTCAAA TATTACAGCA ATCATATTTT TCTCCGTTAT TAATCAACAA ACAGAGTAAT CCACCCGAAA ATTAACACTT CGATAAGCAA CGAAATATAG 9800
AAAGGTCATG CTGCTGTTTT ATGTTGTATA TCACACTTCT TTAAATTGCT CGGCCTGCGC TTATCATGTT CTCCTTCTCT TATAATTTTG TTTATTATTT 9900
ATACTTTTTT ATTTTTTGCT ATCACCGAAA ATAGTGCGGA TCCCGCATGG TATTTAGGTT TACCCATCAT TAAATACCAT TGTTGTTATT TTAATCTTTT 10000
TAATATTTCA TGATTAAGAT CACACTAAAA TTATGACCCT ATTAACTAAA AGTTATGGAT ACCCTAATAA AACTCATTGT TAAAGATTAG TTAACCAAAG 10100
TAACTTCATT TTTCACTATT GTTAAATTGT TATAGTGAAA ATTCTGGTAA ACTAATAGAG GTAAAAAAAT GATCCTAGAT GCCAGTTATA CATTATTAGT 10200
CGCATGTATC GCGCTACTCA TAGGAATGTT TGTCGTAAAA TTTACCCCGT TCCTACAAAA AAACCACATA CCAGAAGCCG TCGTTGGTGG CTTTATTGTT 10300
GCAATTGTTC TGTTAATTAT TGATAAAACA TCAGGTTATT CGTTTACTTT TGATGCTTCA TTGCAAAGTT TATTAATGCT CACATTCTTT TCCTCTATCG 10400
GGCTAAGTTC TGACTTTTCT CGACTGATTA AAGGAGGAAA GCCGTTAGTT CTATTAACTA TTGCAGTAAC GATCCTAATC GCCATTCAAA ATACTGTCGG 10500
CATGAGTATG GCTGTCATGA TGAATGAAAG TCCATTTATT GGCTTAATTG CAGGTTCAAT TACTCTAACA GGTGGTCATG GTAATGCCGG AGCATGGGGC 10600
CCTATTCTCG CTGATAAATA TGATGTAACA GGCGCCGTTG AATTAGCGAT GGCTTGTGCA ACACTTGGAT TAGTGTTGGG TGGTTTAGTT GGCGGCCCTG 10700
TTGCCCGTCA TCTTTTGAAA AAGGTCTCTA TTCCTAAAAC AACCGAGCAA GAGCGCGACA CTATCGTTGA AGCTTTTGAG CAACCAAGCG TCAAAAGAAA 10800
AATCAATGCA AATAACGTTA TTGAAACCAT TTCAATGCTG ATTATCTGTA TTGTTGTTGG TGGCTATATC AGTGCATTGT TTAAAGATAC TTTTCTGCAA 10900
CTGCCTACTT TTGTCTGGTG TTTATTTGTC GGTATTATTA TCCGTAATAC ACTGACTCAT GTATTTAAAC ACGAAGTGTT TGAGCCGACC GTCGATGTAT 11000
TAGGTAGCGT TGCTTTATCG CTTTTCTTGG CAATGGCGTT AATGTCATTA AAATTTGGTC AATTGGCAAG CATGGCAGGG CCAGTATTAA TTATCATTGC 11100
TGTACAAACT GTTGTCATGG TGCTATTTGC CTGCTTTGTC ACCTTCAAAA TGATGGGCAA AGATTATGAT GCTGTCGTGA TCAGCGCGGG TCACTGTGGC 11200
TTTGGTATGG GAGCAACACC AACAGCAATT GCGAATATGC AAACAGTCAC AAAAGCATTT GGACCATCAC ATAAAGCTTT CCTTGTCGTT CCTATGGTCG 11300
GTGCCTTTAT TGTTGATATT TCAAACAGTA TCTTAATTAA AATATTTATT GAAATTGGTA CATACTTTAC CTAATAGCTA CACACTACTC GGCGTACTTC 11400
TCCTAACAAT TTATTATAGG GCAGTATGCC GAGCCGCTTT CTTACCCCGT ATATTCCCCT AGTCAATCTA TTTAGCTTGC ACGTTTACGA ATTAATTCTC 11500
GTGACAGCTA AACCAAAATT TGAATTATGA CGAGTATATC TGATTATTTA TACTTTATTC GTTAGAATAG TCCGTAGAAA TAAATAATCA GTAGGCTACA 11600
TGGAATGAAA TTAAGACATC TCGATATCTT TTATGCTGTA ATGACTTGTG GTTCCTTAAC GCGTGCGGCT GAAGTTTTAC ATATTTCTCA ACCCGCGGCG 11700
AGTAAAGCAC TCAAACATGC TGAGCACTGA GAGATCCCCT CATAATTTCC CCAAAACGTA ACCATGTGTG AATAGATTTT GAGTAAGCAG GGTTGCAGCC 11800
ACGAGTGAGT CTTCCCTTGT TATTGTGTAG CCAGAATGCC GCAAAACTTC CATGCCTAAG CGAACTGTTG AGAGTACGTT TCGATTTCTG ACTGTGTTAG 11900
CCTGGAAGTG CTTGTCCCAA CCTTGTTTCT GAGCATGAAC GCCCGCAAGC CAACATGTTA GTTGAAGCAT CAGGGCGATT AGCAGCATGA TATCAAAACG 12000
CTCTGAGCTG CTCGTTCGGC TATGGCGTAG GCCTAGTCCG TAGGCAGGAC TTTTCAAGTC TCGGAAGGTT TCTTCAATCT GCATTCGCTT CGAATAGATA 12100
TTAACAAGTT GTTTGGGTGT TCGAATTTCA ACAGGTAAGT TAGTTGCTAG AATCCATGGC TCCTTTGCCG ACGCTGAGTA GATTTTAGGT GACGGGTGGT 12200
GACAATGAGT CCGTGTCGAG CGCTGATTTT TTCGGCCTTT AGAGCGAGAT TTATACAATA GAATTTGGCA TGAGATTGGA TTGCTTTTAG TCAGCCTCTT 12300
ATAGCCTAAA GTCTTTGAGT GACTAGATGA CATATCATGT AAGTTGCTGA TAGGTTTCCA GTTTTCCGCT CCTAGGTCTG CATATTGTAC TTTTCCTCTT 12400
ACTCGACTTA ACCAGTACCA ACCCAGCTTC TCAACGGATT TATACCATGG CACTTTAAAG CCAGCATCAC TGACAATGAG CGGTGTGGTG TTACTCGGTA 12500
GAATGCTCGC AAGGTCGGCT AGAAATTGGT CATGAGCTTT CTTTGAACAT TGCTCTGAAA GCGGGAACGC TTTCTCATAA AGAGTAACAG AACGACCGTG 12600
TAGTGCGACT GAAGCTCGCA ATACCATAAG CCGTTTTTGC TCACGGATAT CAGACCAGTC AACAAGTACA ATGGGCATCG TATTGCCCGA ACAGATAAAG 12700
CTAGCATGCC AACGGTATAC AGCGAGTCGC TCTTTGTGGA GGTGACGATT ACCTAACAAT CGGTCGATTC GTTTGATGTT ATGTTTTGTT CTCGCTTTGG 12800
TTGGCAGGTT ACGGCCAAGT TCGGTAAGAG TGAGAGTTTT ACAGTCAAGT AAGGCGTGGC AAGCCAACGT TAAGCTGTTG AGTCGTTTTA AGTGTAATTC 12900
GGGGCAGAAT TGGTAAAGAG AGTCGTGTAA AATATCGAGT TCGCACATTT TGTTGTCTGA TTATTGATTT TTGGCGAAAC CATTTGATCA TATGACAAGA 13000
TGTGTATCTA CCTTAACTTA ATGATTTTGA TAAAAATCAT TAGGGGATTC ATCAGTATCA GGCTGCGTCG GCGCGCTCAC AACAGGTTCG GCTTCGCCCT 13100
GCAATTGTGT GTCCTGCGCT ATCCCGGCCG GGTGCTGGCT CCAGGCGAAC TGATCCCTGC AGAGGTCATC GAATTTATCG GAGCGCAGCT TGGCCTGGGT 13200
GCCGACGATC TCGTAGACTA TGCTGCCCGC GAGGAAACAC GGCACGAGCA TCTTGCCGAG TTACGGGGGC TCTACGGCTT CCGCACCTTC TCCGGACGTG 13300
GTGCGAGCGA GCTGAAGGAA TGGTTGTTCC GAGAAGCCGA GATGGCGGTG TCGAACGAGG ATATCGCCCG TCGCTTCGTA GCCGAGTGCC GACGCACCCG 13400
CACTGTCCTT CCCGCGACAT CCACGATCGA GCGGCTTTGT GCCGCGGCTC TCGTCGATGC CGAGCGACGC ATCGAGACGA GGATCGCCAG TCGGCTGCCT 13500
ATGTCGATCC GAGAACAGTT GCTGGCATTG CTCGAGGAGA CGGCTGATGA TCGGGTGACC CGTTTTGTGT GGCTGCGCCA GTTCGAGCCT GGCTCGAACT 13600
CTTCGTCGGC CAACCGGCTG CTCGACCGGC TCGAATATCT GCAACGCATC GATCTCCCCG AGGATCTGCT TGCCGGCGTT CCTGCCCATC GGGTGACTCG 13700
TCTGCGCAGG CAGGGTGAAC GGTATTATGC CGACGGCATG CGCGATCTCC CGGAGGACAG GCGGCTTGCG ATCTTGGCTG TTTGCGTCTC GGAATGGCAG 13800
GCGATGTTGG CCGACGCAGT GGTCGAAACC CACGACCGGA TCGTCGGCCG TCTCTACCGT GCTTCGGAGC GTATTTGCCA TGCAAAGGTC GCAGACGAAG 13900
CGGGGGTGGT GCGTGACACC CTGAAATCCT TCGCCGAGAT CGGGGGCGCC CTGGTCGATG CACAGGATGA TGGCCAGCCG CTGGGCGATG TCATCGCGAG 14000
TGGGTCAGGG TGGGACGGCT TAAAAACCCT TGTTGCAATG GCAACCAGGC TGACCGCCAC CATGGCCGAC GATCCGCTCA ATCATGTGCT CGACGGTTAT 14100
CACCGCTTCC GCCGATACGC TCCACGCATG TTGCGCCTGC TCGATCTGCG AGCTGCGCCC GTTGCACTGC CGCTTCTGGA AGCGGTGACG GCCCTTCGTA 14200
CCGGTTTGAA CGATGCCGCG ATGACCAGCT TCTTGCGGCC CAGCTCGAAA TGGCATCGCC ACCTTCGGGC CCAGAGGGCT GGCGACGCTC GCCTATGGGA 14300
GATCGCGGTG CTGTTCCATC TGCGCGATGC GTTCCGCTCC GGAGATGTCT GGCTTACTAG GTCCCGGCGC TATGGCGATC TGAAACACGC ACTCGTTCCG 14400
GCACAATCCA TCGCGGAAGG CGGTCGTCTC GCTGTGCCAT TGCGGCCGGA GGAATGGCTG GCAGACCGGC AAGCTCGCCT CGACATGCGG TTGCGCGAGC 14500
TTGGCCGTGC CGCTCGCGCA GGCACGATCC CGGGCGGGTC GATTGAAAAC GGCGTTCTGC ATATCGAGAA ACTCGAAGCC GCCGCGCCGA CAGGCGCCGA 14600
AGATCTGGTG CTCGATCTCT ACAAGCAGAT CCCGCCCACG CGCATCACCG ATCTCCTGCT GGAGGTGGAT GCGGCGACCG GCTTCACCGA AGCGTTCACC 14700
CATCTGCGCA CAGGAGCACC CTGCGCTGAC CGGATCGGGC TAATGAACGT TATCTTGGCG GAAGGGATCA ACCTCGGCTT GCGCAAAATG GCGGATGCGA 14800
CAAACACCCA CACCTTCTGG GAATTGATCC GCATTGGACG GTGGCATGTC GAGGGCGAAG CCTATGACCG GGCGCTGGCC ATGGTGGTCG AGGCACAGGC 14900
AGCGTTACCC ATGGCCCGGT TCTGGGGCAT GGGCACGTCG GCTTCGAGCG ACGGACAGTT CTTCGTCGCT ACAGAGCAAG GTGAGGCCAT GAACCTGGTC 15000
AACGCGAAAT ATGGCAATAC CCCGGGCCTG AAAGCCTATA GCCACGTCTC CGACCAATAT GCGCCGTTCG CAACCCAGGT GATTCCTGCA ACGGCAAGCG 15100
AAGCGCCTTA CATCCTCGAT GGCCTGCTGA TGAACGATGC TGGACGCCAT ATCCGCGAGC AGTTCACCGA CACGGGCGGC TTCACCGATC ACGTCTTTGC 15200
CGCATGTGCC ATTCTCGGCT ACCGGTTCGC TCCGCGCATC CGCGACCTGC CATCCAAACG GCTCTACGCG TTCAATCCGT CGGCCGCCCC GGCGCACCTG 15300
CGAGCGTTGA TCGGCGGAAA GGTCAACCAA GCCATGATCG AGCGCAATTG GCCCGACATC CTGCGCATCG CCGCCACCAT TGCTGCCGGG ACCGTCGCGC 15400
CAAGCCAGAT TCTGCGGAAA CTCGCCTCCT ATCCGCGGCA GAACGAGCTC GCGACAGCCC TGCGGGAAGT CGGTCGCGTC GAGCGCACCC TGTTCATGAT 15500
CGACTGGATT CTGGATGCCG AACTCCAACG GCGTGCCCAG ATCGGGCTCA ACAAAGGCGA AGCTCATCAT GCGCTGAAGC GGGCAATCAG CTTCCACCGC 15600
CGCGGTGAAA TCCGCGACCG TTCCGCCGAA GGCCAGCATT ACCGCATCGC CGGCATGAAT CTGCTCGCCG CCATCATCAT CTTCTGGAAC ACCATGAAGC 15700
TCGGCGAGGT CGTTGCAAAC CAGAAACGCG ATGGAAAGCT GCTATCGCCC GATCTCTTGG CCCATGTTTC GCCGCTCGGA TGGGAACACA TCAATCTCAC 15800
CGGAGAATAT CGCTGGCCAA AGCCTTAGCG TAGGATTCCG CCCCCTCCCG CAAACGACCC C

 Recombination Sites     

Name Coordinates Gene Sequence
res 3565-3786 222 TGTCCCGTTC GACACCTGCG GCGCGCAAGG CGTCGTGCTG CAGGTCGAGA GACTGCGAGC
CATCGGCTTT GGAGACGCGG GCATATCCGA TCAGCATGTA TCACAAACGT TGGTTTGAGG
CGGCGCTTCG GCCACGATTG CATTGACCTC TGGAAATGTA TCTCAACCAG CTTCATAAAC
AAAGCGTCTT GAACGCTATC AGATTTTGAA AAAGGAACAT GT

 ORFs     
ORF Summary
Gene Name Associated TE Coordinates Class Sub Class Orientation
APH(6)-Id (ARO:3002660) Tn5393.8 107-952 Passenger Gene Antibiotic Resistance -
APH(3'')-Ib (ARO:3002639) Tn5393.8 943-1746 Passenger Gene Antibiotic Resistance -
orfAB IS1133 1853-2982 Transposase   -
orfB IS1133 1853-2710 Transposase   -
orfA IS1133 2707-2982 Accessory Gene Regulator -
tnpR Tn5393.8 3050-3661 Accessory Gene Resolvase -
tnp IS10R 4016-5224 Transposase   +
tetD Tn10 5234-5650 Passenger Gene Antibiotic Resistance -
tetC Tn10 5738-6331 Passenger Gene Antibiotic Resistance +
tet(B) (ARO:3000166) Tn10 6444-7649 Passenger Gene Antibiotic Resistance -
tetR (ARO:3003479) Tn10 7728-8354 Passenger Gene Antibiotic Resistance +
jemC Tn10 8332-9018 Passenger Gene Other -
CPT07_26605 Tn10 9026-9412 Passenger Gene Hypothetical -
jemB Tn10 9405-9725 Passenger Gene Other -
jemA Tn10 10169-11374 Passenger Gene Other +
tnp IS10L 11740-12948 Transposase   -
tnpA Tn5393.8 13000-15828 Transposase   +

ORF Details
Gene Name Protein Name Associated TE Gene Length Coordinates Strand
APH(6)-Id (ARO:3002660) APH(6)-Id Tn5393.8 846 107-952 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  APH(6) (ARO:3000151)
Comment:   strB, orfI || strict match to reference sequence for ARO:3002660 (bitscore: 568)
Protein Sequence:  
MGLMFMPPVF PAHWHVSQPV LIADTFSSLV WKVSLPDGTP AIVKGLKPIE DIADELRGAD YLVWRNGRGA VRLLGRENNL MLLEYAGERM LSHIVAEHGD
YQATEIAAEL MAKLYAASEE PLPSALLPIR DRFAALFQRA RDDQNAGCQT DYVHAAIIAD QMMSNASELR GLHGDLHHEN IMFSSRGWLV IDPVGLVGEV
GFGAANMFYD PADRDDLCLD PRRIAQMADA FSRALDVDPR RLLDQAYAYG CLSAAWNADG EEEQRDLAIA AAIKQVRQTS Y

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
APH(3'')-Ib (ARO:3002639) APH(3'')-Ib Tn5393.8 804 943-1746 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  APH(3'') (ARO:3000127)
Comment:   strA, orfH || perfect match to reference sequence for ARO: 3002639
Protein Sequence:  
MNRTNIFFGE SHSDWLPVRG GESGDFVFRR GDGHAFAKIA PASRRGELAG ERDRLIWLKG RGVACPEVIN WQEEQEGACL VITAIPGVPA ADLSGADLLK
AWPSMGQQLG AVHSLSVDQC PFERRLSRMF GRAVDVVSRN AVNPDFLPDE DKSTPQLDLL ARVERELPVR LDQERTDMVV CHGDPCMPNF MVDPKTLQCT
GLIDLGRLGT ADRYADLALM IANAEENWAA PDEAERAFAV LFNVLGIEAP DRERLAFYLR LDPLTWG

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
orfAB OrfAB IS1133 1130 1853-2982 -
Class:   Transposase
Transpoase Chemistry:   DDE
Comment:   fusion protein from -1 programmed frameshifting between orfA and orfB
Protein Sequence:  
MSLKHSDEFK RDAVRIALTS GLTRRQVASD LSIGLSTLGK WIASISDETK IPTQDTDLLR ENERLRKENR ILREEREILK KAAIFFAVQK L*DFSLLRIT
VALSHVHAYV V*WA*QIVVY VHGNAVLHHC ASVVILYF*R IYVSSIGCVW GAMVGRV*QK S*KRWACRLG SVGLDV*CAR ITLQLFERVN SNGQRIVIIP
STLHRTY*NK TLAQAHPTRN GQAISLMFGP EKDGSILLLS LTCIPVA*LA GQQVID*SRI LH*GH*IWRW LYANHHRVVF NTQTVGANIA LMNIKSYCSN
INCCRP*AGK AIVLITPQ*K ASLNH*RLS* FGADTGKQGE ILRLQSSNI* MAFIIHAEDI QHSAGNRRWH LRKKPL

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
orfB OrfB IS1133 858 1853-2710 -
Class:   Transposase
Function:   Nucleic acid binding (GO:0003676)
Transpoase Chemistry:   DDE
Comment:   frameshift required| 5'-end of tnp gene
Protein Sequence:  
MRFQFITDYR GSLSRSRICR LMGVTDRGLR AWKRRPPSLR QRRDLILLAH IREQHRLCLG SYGRPRMTEE LKALGLQVGQ RRVGRLMRQN NITVVRTRKF
KRTTDSHHTF NIAPNLLKQD FSASAPNQKW AGDITYVWTR EGWVYLAVIL DLYSRRVIGW ATGDRLKQDL ALRALNMALA LRKPPPGCIQ HTDRGSQYCA
HEYQKLLLKH QLLPSMSGKG NCFDNSAVES FFKSLKAELI WRRHWQTRRD IEIAIFEYIN GFYNPRRRHS TLGWKSPVAF EKKAA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
orfA OrfA IS1133 276 2707-2982 -
Class:   Accessory Gene
Sub Class:   Regulator
Function:   transposase activity (GO:0004803)
Comment:   orfA, together with orfB, encodes a fusion protein formed by translational frame-shifting that is the transposase for IS1133
Protein Sequence:  
MSLKHSDEFK RDAVRIALTS GLTRRQVASD LSIGLSTLGK WIASISDETK IPTQDTDLLR ENERLRKENR ILREEREILK KAAIFFAVQK L

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnpR TnpR Tn5393.8 612 3050-3661 -
Class:   Accessory Gene
Sub Class:   Resolvase
Function:   recombinaseactivity (GO:0000150)
Transpoase Chemistry:   Serine
Sequence Family:  Serine Site-Specific Recombinase
Protein Sequence:  
MLIGYARVSK ADGSQSLDLQ HDALRAAGVE RDNIYDDLAS GGRDDRPGLT ACLKSLRDGD VLVVWKLDRL GRSLAHLVNT VKELSDRKIG LRVLTGKGAQ
IDTTTASGRM VFGIFATLAE FERDLIRERT MAGLASARAR GRKGGRKFAL TKAQVRLAQA AMAQRDTSVS DLCKELGIER VTLYRYVGPK GELRDHGKHV
LGLT

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnp Tnp IS10R 1209 4016-5224 +
Class:   Transposase
Function:   transposase
Transpoase Chemistry:   DDE
Comment:   minor sequence variant-99.9% identical to reference sequence for tnp (IS10R)
Protein Sequence:  
MCELDILHDS LYQFCPELHL KRLNSLTLAC HALLDCKTLT LTELGRNLPT KARTKHNIKR IDRLLGNRHL HKERLAVYRW HASFICSGNT MPIVLVDWSD
IREQKRLMVL RASVALHGRS VTLYEKAFPL SEQCSKKAHD QFLADLASIL PSNTTPLIVS DAGFKVPWYK SVEKLGWYWL SRVRGKVQYA DLGAENWKPI
SNLHDMSSSH SKTLGYKRLT KSNPISCQIL LYKSRSKGRK NQRSTRTHCH HPSPKIYSAS AKEPWVLATN LPVEIRTPKQ LVNIYSKRMQ IEETFRDLKS
PAYGLGLRHS RTSSSERFDI MLLIALMLQL TC*LAGVHAQ KQGWDKHFQA NTVRNRNVLS TVRLGMEVLR HSGYTITRED LLVAATLLAQ NLFTHGYALG
KL

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tetD TetD Tn10 417 5234-5650 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Target:   tetracycline antibiotic (ARO:3000050)
Comment:   no match in CARD
Protein Sequence:  
MYIEQHSRYQ NKANNIQLRY DDKQFHTTVI KDVLLWIEHN LDQSLLLDDV ANKAGYTKWY FQRLFKKVTG VTLASYIRAR RLTKAAVELR LTKKTILEIA
LKYQFDSQQS FTRRFKYIFK VTPSYYRRNK LWELEAMH

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tetC TetC Tn10 594 5738-6331 +
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   DNA binding (GO:0003677)
Target:   tetracycline antibiotic (ARO:3000050)
Sequence Family:  Bacterial regulatory proteins, tetR family (Pfam:PF00440)
Comment:   no match in CARD||99.8% identical to TnCentral reference sequence for tetC (Tn10)
Protein Sequence:  
MENKNHQQEN FKSTYQSLVN SARILFVEKG YQAVSIDEIS GKALVTKGAF YHHFKNKKQL LSACYKQQLI MIDAYITTKT DLTNGWSALE SIFEHYLDYI
IDNNKNLIPI QEVMPIIGWN ELEKISLEYI TGKVNAIVSK LIQENQLKAY DDDVLKNLLN GWFMHIAIHA KNLKELADKK GQFIAIYRGF LLSLKDK

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tet(B) (ARO:3000166) Tet(B) Tn10 1206 6444-7649 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic efflux (ARO:0010000)
Transpoase Chemistry:   antibiotic efflux (ARO:0010000)
Target:   tetracycline antibiotic (ARO:3000050)
Sequence Family:  major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002)
Comment:   strict match to reference sequence for ARO:3000166 (bitscore:786)||99.9% identical to TnCentral reference sequence for tet(B) (Tn10)||Synonym: tetB
Protein Sequence:  
MNSSTKIALV ITLLDAMGIG LIMPVLPTLL REFIASEDIA NHFGVLLALY ALMQVIFAPW LGKMSDRFGR RPVLLLSLIG ASLDYLLLAF SSALWMLYLG
RLLSGITGAT GAVAASVIAD TTSASQRVKW FGWLGASFGL GLIAGPIIGG FAGEISPHSP FFIAALLNIV AFLVVMFWFR ETKNTRDNTD TEVGVETQSN
SVYITLFKTM PILLIIYFSA QLIGQIPATV WVLFTENRFG WNSMMVGFSL AGLGLLHSVF QAFVAGRIAT KWGEKTAVLL GFIADSSAFA FLAFISEGWL
VFPVLILLAG GGIALPALQG VMSIQTKSHQ QGALQGLLVS LTNATGVIGP LLFAVIYNHS LPIWDGWIWI IGLAFYCIII LLSMTFMLTP QAQGSKQETS
A

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tetR (ARO:3003479) TetR Tn10 627 7728-8354 +
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target alteration (ARO:0001001); antibiotic efflux (ARO:0010000)
Transpoase Chemistry:   repressor of the tetracycline resistance element
Target:   tetracycline antibiotic (ARO:3000050)
Sequence Family:  major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002)
Comment:   perfect match to reference sequence for ARO:3003479
Protein Sequence:  
MMSRLDKSKV INSALELLNE VGIEGLTTRK LAQKLGVEQP TLYWHVKNKR ALLDALAIEM LDRHHTHFCP LEGESWQDFL RNNAKSFRCA LLSHRDGAKV
HLGTRPTEKQ YETLENQLAF LCQQGFSLEN ALYALSAVGH FTLGCVLEDQ EHQVAKEERE TPTTDSMPPL LRQAIELFDH QGAEPAFLFG LELIICGLEK
QLKCESGS

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
jemC JemC Tn10 687 8332-9018 -
Class:   Passenger Gene
Sub Class:   Other
Sequence Family:  HTH ArsR-type DNA-binding domain (InterPro:IPR001845)
Comment:   N-terminal 100 amino acids similar to bacterial transcriptional repressors and metal-binding proteins (PMID:10781570)
Protein Sequence:  
MANLIRKEVT FESSIAAIGA AMSDISRVKI LSALMDGRAW TATELSSVAN ISASTASSHL SKLLDCQLIT VVAQGKHRYF RLAGKDIAEL MESMMGISLN
HGVHAKVSTP VHLRKARTCY DHLAGEVAVK IYDSLCQQQW ITENGSMITL SGIQYFHEMG IDVPSKHSRK ICCACLDWSE RRFHLGGYVG AALFSLYESK
GWLTRHLGYR EVTITEKGYA AFKTHFHI

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
CPT07_26605 CPT07_26605 Tn10 387 9026-9412 -
Class:   Passenger Gene
Sub Class:   Hypothetical
Comment:   Amino acid-binding protein
Protein Sequence:  
MFDVHVVLDN QIGQLALLGK TLGNKGIGLE GGGIFTVGDE CHAHFLVEQG KEAKIALEQA GLLVLAIRTP LIRKLKQEKP GELGEIARVL AENNINILVQ
YSDHANQLIL ITDNDSMAAS VTLPWAIK

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
jemB JemB Tn10 321 9405-9725 -
Class:   Passenger Gene
Sub Class:   Other
Sequence Family:  Antibiotic biosynthesis monooxygenase (Pfam:PF03992)
Protein Sequence:  
MIAVIFEVQI QPDQQTRYLT LAEELRPLLS HVAGFISIER FQSLATEGKM LSLSWWENEY AVLQWKNHVL HAKAQQEGRE SIFDFYKISI AHITREYSFK
KDKDNV

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
jemA JemA Tn10 1206 10169-11374 +
Class:   Passenger Gene
Sub Class:   Other
Function:   glutamate:sodium symporter activity (GO:0015501)
Comment:   sodium-dependent glutamate permease
Protein Sequence:  
MILDASYTLL VACIALLIGM FVVKFTPFLQ KNHIPEAVVG GFIVAIVLLI IDKTSGYSFT FDASLQSLLM LTFFSSIGLS SDFSRLIKGG KPLVLLTIAV
TILIAIQNTV GMSMAVMMNE SPFIGLIAGS ITLTGGHGNA GAWGPILADK YDVTGAVELA MACATLGLVL GGLVGGPVAR HLLKKVSIPK TTEQERDTIV
EAFEQPSVKR KINANNVIET ISMLIICIVV GGYISALFKD TFLQLPTFVW CLFVGIIIRN TLTHVFKHEV FEPTVDVLGS VALSLFLAMA LMSLKFGQLA
SMAGPVLIII AVQTVVMVLF ACFVTFKMMG KDYDAVVISA GHCGFGMGAT PTAIANMQTV TKAFGPSHKA FLVVPMVGAF IVDISNSILI KIFIEIGTYF
T

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnp Tnp IS10L 1209 11740-12948 -
Class:   Transposase
Function:   transposase
Transpoase Chemistry:   DDE
Protein Sequence:  
MCELDILHDS LYQFCPELHL KRLNSLTLAC HALLDCKTLT LTELGRNLPT KARTKHNIKR IDRLLGNRHL HKERLAVYRW HASFICSGNT MPIVLVDWSD
IREQKRLMVL RASVALHGRS VTLYEKAFPL SEQCSKKAHD QFLADLASIL PSNTTPLIVS DAGFKVPWYK SVEKLGWYWL SRVRGKVQYA DLGAENWKPI
SNLHDMSSSH SKTLGYKRLT KSNPISCQIL LYKSRSKGRK NQRSTRTHCH HPSPKIYSAS AKEPWILATN LPVEIRTPKQ LVNIYSKRMQ IEETFRDLKS
PAYGLGLRHS RTSSSERFDI MLLIALMLQL TCWLAGVHAQ KQGWDKHFQA NTVRNRNVLS TVRLGMEVLR HSGYTITRED SLVAATLLTQ NLFTHGYVLG
KL

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnpA TnpA Tn5393.8 2829 13000-15828 +
Class:   Transposase
Function:   transposase activity (GO:0004803)
Transpoase Chemistry:   DDE
Comment:   probably N-terminal truncation by Tn10 insertion
Protein Sequence:  
MCIYLNLMIL IKIIRGFISI RLRRRAHNRF GFALQLCVLR YPGRVLAPGE LIPAEVIEFI GAQLGLGADD LVDYAAREET RHEHLAELRG LYGFRTFSGR
GASELKEWLF REAEMAVSNE DIARRFVAEC RRTRTVLPAT STIERLCAAA LVDAERRIET RIASRLPMSI REQLLALLEE TADDRVTRFV WLRQFEPGSN
SSSANRLLDR LEYLQRIDLP EDLLAGVPAH RVTRLRRQGE RYYADGMRDL PEDRRLAILA VCVSEWQAML ADAVVETHDR IVGRLYRASE RICHAKVADE
AGVVRDTLKS FAEIGGALVD AQDDGQPLGD VIASGSGWDG LKTLVAMATR LTATMADDPL NHVLDGYHRF RRYAPRMLRL LDLRAAPVAL PLLEAVTALR
TGLNDAAMTS FLRPSSKWHR HLRAQRAGDA RLWEIAVLFH LRDAFRSGDV WLTRSRRYGD LKHALVPAQS IAEGGRLAVP LRPEEWLADR QARLDMRLRE
LGRAARAGTI PGGSIENGVL HIEKLEAAAP TGAEDLVLDL YKQIPPTRIT DLLLEVDAAT GFTEAFTHLR TGAPCADRIG LMNVILAEGI NLGLRKMADA
TNTHTFWELI RIGRWHVEGE AYDRALAMVV EAQAALPMAR FWGMGTSASS DGQFFVATEQ GEAMNLVNAK YGNTPGLKAY SHVSDQYAPF ATQVIPATAS
EAPYILDGLL MNDAGRHIRE QFTDTGGFTD HVFAACAILG YRFAPRIRDL PSKRLYAFNP SAAPAHLRAL IGGKVNQAMI ERNWPDILRI AATIAAGTVA
PSQILRKLAS YPRQNELATA LREVGRVERT LFMIDWILDA ELQRRAQIGL NKGEAHHALK RAISFHRRGE IRDRSAEGQH YRIAGMNLLA AIIIFWNTMK
LGEVVANQKR DGKLLSPDLL AHVSPLGWEH INLTGEYRWP KP

 Internal Transposable Elements (TE)     

TnCentral Accession TE Name Type Coordinates Length
IS1133-Z12167 IS1133 Insertion Sequence 1815-3046 1232
Tn10-AF162223 Tn10 Transposon 3909-13055 9147
IS10R-AF162223 IS10R Insertion Sequence 3909-5237 1329
IS10L-AF162223 IS10L Insertion Sequence 11727-13055 1329

 Internal Repeat Elements     

Name Associated Mobile Element Coordinates Sequence (Top Strand)
IRL Tn5393.8 1-40 GGGGTCGTTT GCGGGAGAGG GCGAAATCCT ACGCTAAGGC
IRR IS1133 1815-1841 TGGACTTGCA CCGGTTGTGT TCCGGTC
IRL IS1133 3020-3046 CTGGCCTTGC TTTGGCTCCG TTCAGGT
IRL IS10R 3909-3925 CTGATGAATC CCCTAAT
IRR IS10R 5216-5237 TTTAATACTC CCCTAGAGAG TC
IRR IS10L 11727-11748 CTGAGAGATC CCCTCATAAT TT
IRL IS10L 13039-13055 TAATCCCCTA AGTAGTC
IRRl Tn5393.8 15781-15861 ACCCTTGTGT AGTTAGAGTG GCCTCTTATA GCGACCGGTT TCGGAATCGC
ATCCTAAGGC GGGGGAGGGC GTTTGCTGGG G

 References     

Johnson TJ, Thorsness JL, Anderson CP, Lynne AM, Foley SL, Han J, Fricke WF, McDermott PF, White DG, Khatri M, Stell AL, Flores C, Singer RS. Horizontal gene transfer of a ColV plasmid has resulted in a dominant avian clonal type of Salmonella enterica serovar Kentucky. PLoS One. 2010 Dec 22;5(12):e15524. doi: 10.1371/journal.pone.0015524. PubMed ID: 21203520