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Name: Tn5393.8 |
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Family: Tn3 Group: Tn163 |
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Evidence of Transposition: no |
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Host |
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Host Organism: | Salmonella enterica subsp. enterica serovar Kentucky | Molecular Source: | plasmid pCS0010A |
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Map |
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Terminal Inverted Repeats (IR) |
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IRL (Length: 81 bp) | | GGGGTCGTTTGCGGGAGAGGGCGAAATCCTACGCTAAGGCTTTGGCCAACGATATTCTCCGGTAAGATTGATGTGTTCCCA |
IRR (Length: 40 bp) | | GGGGTCGTTTGCGGGAGGGGGCGGAATCCTACGCTAAGGC |
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Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTCGTTT GCGGGAGAGG GCGAAATCCT ACGCTAAGGC TTTGGCCAAC GATATTCTCC GGTAAGATTG ATGTGTTCCC AGGGGATAGG AGAAGTCGCT 100
TGATATCTAG TATGACGTCT GTCGCACCTG CTTGATCGCG GCCGCGATAG CTAGATCGCG TTGCTCCTCT TCTCCATCCG CGTTCCAAGC TGCGGAAAGG 200
CACCCATAAG CGTACGCCTG GTCGAGCAGG CGACGCGGAT CGACGTCCAG CGCACGAGAG AATGCGTCCG CCATCTGTGC AATGCGTCTA GGATCGAGAC 300
AAAGGTCGTC TCTGTCAGCC GGATCGTAGA ACATATTGGC GGCGCCAAAG CCCACTTCAC CGACCAGACC GACGGGATCT ATCACCAGCC AGCCGCGACT 400
GGAGAACATG ATGTTTTCAT GATGCAGATC GCCATGTAGC CCACGCAGTT CCGAGGCATT GCTCATCATT TGATCGGCTA TAATCGCCGC GTGGACGTAG 500
TCAGTTTGAC AACCTGCGTT TTGATCATCG CGCGCCCGCT GAAACAAAGC TGCAAAGCGA TCCCGGATCG GGAGAAGGGC AGAAGGCAGG GGTTCCTCAG 600
ATGCGGCATA CAGCTTCGCC ATTAGTTCCG CTGCAATTTC GGTCGCCTGG TAGTCGCCGT GCTCGGCAAC GATGTGAGAG AGCATTCGCT CCCCGGCATA 700
TTCGAGCAAC ATCAGATTGT TCTCACGACC GAGCAACCGG ACTGCTCCCC TCCCATTGCG CCATACCAGA TAGTCGGCCC CGCGCAGTTC ATCAGCAATG 800
TCTTCTATAG GTTTCAATCC CTTGACGATT GCAGGAGTCC CGTCTGGCAA TGAAACTTTC CAAACGAGGC TGGAAAAGGT GTCCGCAATG AGAACAGGTT 900
GCGAAACGTG CCAATGAGCA GGAAAAACAG GCGGCATGAA CATCAACCCC AAGTCAGAGG GTCCAATCGC AGATAGAAGG CAAGGCGTTC GCGGTCGGGG 1000
GCTTCGATCC CCAATACATT GAATAGGACA GCGAAGGCGC GCTCTGCTTC ATCTGGCGCT GCCCAGTTCT CTTCGGCGTT AGCAATCATG AGTGCCAAAT 1100
CGGCATAGCG ATCTGCTGTT CCGAGCCGCC CAAGGTCGAT CAGACCCGTG CATTGAAGAG TTTTAGGGTC CACCATGAAG TTCGGCATGC AGGGATCACC 1200
ATGGCAAACA ACCATATCGG TGCGCTCTTG GTCGAGCCGC ACCGGTAGCT CTCGTTCGAC ACGAGCCAAA AGATCGAGCT GCGGCGTACT CTTGTCCTCG 1300
TCCGGTAAGA AGTCGGGATT GACGGCATTG CGGGACACCA CATCAACGGC GCGTCCGAAC ATTCGCGACA GCCTGCGCTC AAACGGACAT TGATCAACCG 1400
ATAGGCTGTG AACAGCGCCA AGTTGCTGCC CCATTGACGG CCACGCTTTG AGCAAATCCG CTCCAGACAG ATCAGCCGCC GGTACTCCCG GAATTGCCGT 1500
TATCACCAAG CATGCACCCT CCTGTTCCTC CTGCCAGTTG ATGACCTCGG GGCAAGCCAC ACCTCGACCT TTGAGCCAAA TGAGGCGGTC ACGCTCTCCA 1600
GCGAGCTCAC CGCGGCGGGA AGCAGGTGCG ATTTTCGCGA AGGCATGCCC GTCACCACGT CGAAAAACAA AATCACCAGA TTCTCCGCCT CTGACAGGCA 1700
ACCAGTCAGA ATGCGATTCA CCAAAAAAAA TATTAGTTCG ATTCAATGGA GGTTCCTTCA GTTTTCTGAT GAAGCGCGGA GGTGGCTCAA CCTGCGAAAA 1800
GAAACGAGTT GCTATGGACT TGCACCGGTT GTGTTCCGGT CTATCTCTCA TTTTAAGCGG CTTTTTTCTC AAATGCCACC GGCGATTTCC AGCCGAGTGT 1900
TGAATGTCTT CGGCGTGGAT TATAAAAGCC ATTTATATAT TCGAAGATTG CAATCTCAAT ATCTCGCCTT GTTTGCCAGT GTCTGCGCCA AATCAACTCA 2000
GCCTTTAATG ATTTAAAGAA GCTTTCTACT GCGGAGTTAT CAAAACAATT GCCTTTCCCG CTCATGGACG GCAGCAATTG ATGTTTGAGC AGTAGCTTTT 2100
GATATTCATG AGCGCAATAT TGGCTCCCAC GGTCTGTGTG TTGAATACAA CCCGGTGGTG GTTTGCGTAA AGCCAACGCC ATATTCAGTG CCCTTAATGC 2200
AAGATCCTGC TTTAATCGAT CACCTGTTGC CCAGCCAATC ACGCGACGGG AATACAGGTC AAGGATAACA GCAAGATAGA CCCATCCTTC TCTGGTCCAA 2300
ACATAAGTGA TATCGCCTGC CCATTTCTGG TTGGGTGCGC TTGCGCTAAA GTCTTGTTTT AATAGGTTCG GTGCAATGTT GAAGGTATGA TGACTATCCG 2400
TTGTCCGTTT GAATTTACGC GTTCGAACAA CTGTAATGTT ATTCTGGCGC ATCAAACGTC CAACCCGACG CTGCCCAACC TGCAGGCCCA GCGCTTTCAA 2500
CTCTTCTGTC ATACGCGGCC TACCATAGCT CCCCAAACAC AACCGATGCT GCTCACGTAT ATGCGCTAGA AGTATAAGAT CACGACGCTG GCGCAGTGAT 2600
GGAGGACGGC GTTTCCATGC ACGTAAACCA CGATCTGTTA CGCCCATCAA ACGACATATG CGTGAACGTG AGAGAGAGCC ACGGTAATCC GTAATAAACT 2700
GAAATCTCAC AGCTTTTGTA CTGCGAAAAA TATTGCTGCC TTTTTTAATA TCTCCCTCTC CTCCCGAAGG ATACGGTTCT CTTTGCGTAA ACGTTCATTC 2800
TCACGCAGAA GATCAGTGTC TTGGGTAGGA ATTTTAGTTT CATCGGAAAT TGATGCGATC CATTTCCCAA GCGTGGAAAG CCCAATACTT AAATCTGACG 2900
CAACTTGACG GCGTGTTAAG CCACTAGTGA GTGCTATGCG AACTGCATCA CGCTTAAATT CATCACTATG CTTTAATGAC ATATATGGTC TCCTTGATAA 3000
CAAATAATGC TCTCAAAAAG ACCGGAACGA AACCGAGGCA AGTCCACTAC GTAAGTCCGA GAACATGCTT TCCATGGTCT CTGAGCTCGC CTTTGGGACC 3100
GACATATCGG TAGAGAGTGA CGCGCTCGAT GCCGAGTTCC TTGCAGAGAT CGGAAACTGA AGTATCGCGC TGGGCCATGG CGGCTTGCGC GAGACGCACC 3200
TGAGCTTTGG TGAGCGCGAA TTTTCGTCCG CCCTTGCGAC CGCGCGCTCT CGCGGAGGCG AGACCCGCCA TGGTGCGCTC TCGGATCAGA TCCCGCTCGA 3300
ACTCGGCCAA GGTGGCGAAG ATTCCGAACA CCATGCGACC GGACGCAGTC GTGGTGTCGA TCTGAGCGCC CTTTCCAGTC AGAACCCGCA GGCCGATCTT 3400
GCGGTCTGAC AGCTCCTTCA CCGTGTTGAC CAGATGGGCA AGCGATCGTC CGAGGCGATC GAGCTTCCAG ACCACCAGCA CATCGCCGTC ACGCAATGAC 3500
TTGAGGCAGG CAGTCAAGCC AGGGCGATCA TCACGACCGC CGGAAGCAAG ATCATCATAG ATATTGTCCC GTTCGACACC TGCGGCGCGC AAGGCGTCGT 3600
GCTGCAGGTC GAGAGACTGC GAGCCATCGG CTTTGGAGAC GCGGGCATAT CCGATCAGCA TGTATCACAA ACGTTGGTTT GAGGCGGCGC TTCGGCCACG 3700
ATTGCATTGA CCTCTGGAAA TGTATCTCAA CCAGCTTCAT AAACAAAGCG TCTTGAACGC TATCAGATTT TGAAAAAGGA ACATGTATGC CGCGTCGCGT 3800
CACTCTAACC GATCGGCAGA AAGACGCGCT GTTGCGCTTG CCGACTTCAC AGACGGATTT GCTCAAGCAC TATACGCTGA GTGATGAAGA CCTTGGGCAT 3900
ATCAGGCTCT GATGAATCCC CTAATGATTT TGGTAAAAAT CATTAAGTTA AGGTGGATAC ACATCTTGTC ATATGATCAA ATGGTTTCGC GAAAAATCAA 4000
TAATCAGACA ACAAGATGTG CGAACTCGAT ATTTTACACG ACTCTCTTTA CCAATTCTGC CCCGAATTAC ACTTAAAACG ACTCAACAGC TTAACGTTGG 4100
CTTGCCACGC ATTACTTGAC TGTAAAACTC TCACTCTTAC CGAACTTGGC CGTAACCTGC CAACCAAAGC GAGAACAAAA CATAACATCA AACGAATCGA 4200
CCGATTGTTA GGTAATCGTC ACCTCCACAA AGAGCGACTC GCTGTATACC GTTGGCATGC TAGCTTTATC TGTTCGGGCA ATACGATGCC CATTGTACTT 4300
GTTGACTGGT CTGATATTCG TGAGCAAAAA CGACTTATGG TATTGCGAGC TTCAGTCGCA CTACACGGTC GTTCTGTTAC TCTTTATGAG AAAGCGTTCC 4400
CGCTTTCAGA GCAATGTTCA AAGAAAGCTC ATGACCAATT TCTAGCCGAC CTTGCGAGCA TTCTACCGAG TAACACCACA CCGCTCATTG TCAGTGATGC 4500
TGGCTTTAAA GTGCCATGGT ATAAATCCGT TGAGAAGCTG GGTTGGTACT GGTTAAGTCG AGTAAGAGGA AAAGTACAAT ATGCAGACCT AGGAGCGGAA 4600
AACTGGAAAC CTATCAGCAA CTTACATGAT ATGTCATCTA GTCACTCAAA GACTTTAGGC TATAAGAGGC TGACTAAAAG CAATCCAATC TCATGCCAAA 4700
TTCTATTGTA TAAATCTCGC TCTAAAGGCC GAAAAAATCA GCGCTCGACA CGGACTCATT GTCACCACCC GTCACCTAAA ATCTACTCAG CGTCGGCAAA 4800
GGAGCCATGG GTTCTAGCAA CTAACTTACC TGTTGAAATT CGAACACCCA AACAACTTGT TAATATCTAT TCGAAGCGAA TGCAGATTGA AGAAACCTTC 4900
CGAGACTTGA AAAGTCCTGC CTACGGACTA GGCCTACGCC ATAGCCGAAC GAGCAGCTCA GAGCGTTTTG ATATCATGCT GCTAATCGCC CTGATGCTTC 5000
AACTAACATG TTGACTTGCG GGCGTTCATG CTCAGAAACA AGGTTGGGAC AAGCACTTCC AGGCTAACAC AGTCAGAAAT CGAAACGTAC TCTCAACAGT 5100
TCGCTTAGGC ATGGAAGTTT TGCGGCATTC TGGCTACACA ATAACAAGGG AAGACTTACT CGTGGCTGCA ACCCTACTAG CTCAAAATTT ATTCACACAT 5200
GGTTACGCTT TGGGGAAATT ATGAGGGGAT CTCTCAGTGC ATTGCCTCCA ATTCCCATAA TTTATTACGC CGATAATAAC TTGGTGTAAC CTTAAAAATG 5300
TACTTAAATC GACGTGTAAA AGATTGTTGG GAATCAAATT GATATTTTAA TGCGATCTCA AGGATAGTTT TTTTCGTCAA CCTCAACTCA ACAGCCGCTT 5400
TCGTCAAACG ACGAGCACGA ATATAGCTAG CCAGTGTGAC CCCTGTTACT TTTTTGAACA GCCGCTGAAA ATACCACTTG GTATAACCCG CTTTATTCGC 5500
CACATCATCA AGCAGTAAAG ACTGATCTAA ATTATGTTCA ATCCATAATA GAACATCTTT GATAACCGTT GTATGAAACT GCTTATCATC ATATCTTAAT 5600
TGGATGTTAT TAGCTTTATT TTGATAGCGA GAATGCTGTT CAATATACAT AAAATAACCT AAATGTTCTT AAGATTGTCA CGACCACATC ATCATGATAC 5700
CATAAACATA CTGACGGTAT GTTATTTTAA ATCTATCATG GAAAATAAAA ATCATCAACA AGAAAATTTT AAGAGTACCT ATCAATCACT GGTTAACTCA 5800
GCACGAATAT TGTTTGTTGA AAAAGGCTAT CAAGCTGTTT CAATAGATGA GATCTCGGGA AAAGCGTTGG TGACCAAAGG TGCCTTTTAT CATCACTTTA 5900
AAAATAAAAA ACAATTACTC AGTGCCTGTT ATAAGCAGCA ATTAATTATG ATTGATGCCT ACATCACAAC AAAAACTGAT TTAACAAATG GTTGGTCTGC 6000
CTTAGAAAGT ATATTTGAAC ATTATCTTGA TTATATTATT GATAATAATA AAAACCTTAT CCCTATCCAA GAAGTGATGC CAATCATTGG TTGGAATGAA 6100
CTTGAAAAAA TTAGCCTTGA ATACATTACT GGTAAGGTAA ACGCCATTGT CAGCAAATTG ATCCAAGAGA ACCAACTTAA AGCTTATGAT GATGATGTGC 6200
TTAAAAACTT ACTCAATGGC TGGTTTATGC ATATCGCAAT ACATGCGAAA AACCTAAAAG AGCTTGCCGA TAAAAAAGGC CAATTTATTG CTATTTACCG 6300
CGGCTTTTTA TTGAGCTTGA AAGATAAATA AAATAGATAG GTTTTATTTG AAGCTAAATC TTCTTTATCG TAAAAAATGC CCTCTTGGGT TATCAAGAGG 6400
GTCATTATAT TTCGCGGAAT AACATCATTT GGTGACGAAA TAACTAAGCA CTTGTCTCCT GTTTACTCCC CTGAGCTTGA GGGGTTAACA TGAAGGTCAT 6500
CGATAGCAGG ATAATAATAC AGTAAAACGC TAAACCAATA ATCCAAATCC AGCCATCCCA AATTGGTAGT GAATGATTAT AAATAACAGC AAACAGTAAT 6600
GGGCCAATAA CACCGGTTGC ATTGGTAAGG CTCACCAATA ATCCCTGTAA AGCACCTTGC TGATGACTCT TTGTTTGGAT AGACATCACT CCCTGTAATG 6700
CAGGTAAAGC GATCCCACCA CCAGCCAATA AAATTAAAAC AGGGAAAACT AACCAACCTT CAGATATAAA CGCTAAAAAG GCAAATGCAC TACTATCTGC 6800
AATAAATCCG AGCAGTACTG CCGTTTTTTC GCCCCATTTA GTGGCTATTC TTCCTGCCAC AAAGGCTTGG AATACTGAGT GTAAAAGACC AAGACCCGCT 6900
AATGAAAAGC CAACCATCAT GCTATTCCAT CCAAAACGAT TTTCGGTAAA TAGCACCCAC ACCGTTGCGG GAATTTGGCC TATCAATTGC GCTGAAAAAT 7000
AAATAATCAA CAAAATGGGC ATCGTTTTAA ATAAAGTGAT GTATACCGAA TTCGATTGCG TCTCAACCCC TACTTCGGTA TCTGTATTAT CACGTGTATT 7100
TTTGGTTTCA CGGAACCAAA ACATAACCAC AAGGAAAGCG ACAATATTTA GCAACGCAGC GATAAAAAAG GGACTATGCG GTGAAATCTC TCCTGCAAAA 7200
CCACCAATAA TAGGCCCCGC TATTAAACCA AGCCCAAAAC TTGCCCCTAA CCAACCGAAC CACTTCACGC GTTGAGAAGC TGAGGTGGTA TCGGCAATGA 7300
CCGATGCCGC GACAGCCCCA GTAGCTCCTG TGATCCCTGA AAGCAAACGG CCTAAATACA GCATCCAAAG CGCACTTGAA AAAGCCAGCA ATAAGTAATC 7400
CAGCGATGCG CCTATTAATG ACAACAACAG CACTGGGCGC CGACCAAATC GGTCAGACAT TTTTCCAAGC CAAGGAGCAA AGATAACCTG CATTAACGCA 7500
TAAAGTGCAA GCAATACGCC AAAGTGGTTA GCGATATCTT CCGAAGCAAT AAATTCACGT AATAACGTTG GCAAGACTGG CATGATAAGG CCAATCCCCA 7600
TGGCATCGAG TAACGTAATT ACCAATGCGA TCTTTGTCGA ACTATTCATT TCACTTTTCT CTATCACTGA TAGGGAGTGG TAAAATAACT CTATCAATGA 7700
TAGAGTGTCA ACAAAAATTA GGAATTAATG ATGTCTAGAT TAGATAAAAG TAAAGTGATT AACAGCGCAT TAGAGCTGCT TAATGAGGTC GGAATCGAAG 7800
GTTTAACAAC CCGTAAACTC GCCCAGAAGC TAGGTGTAGA GCAGCCTACA TTGTATTGGC ATGTAAAAAA TAAGCGGGCT TTGCTCGACG CCTTAGCCAT 7900
TGAGATGTTA GATAGGCACC ATACTCACTT TTGCCCTTTA GAAGGGGAAA GCTGGCAAGA TTTTTTACGT AATAACGCTA AAAGTTTTAG ATGTGCTTTA 8000
CTAAGTCATC GCGATGGAGC AAAAGTACAT TTAGGTACAC GGCCTACAGA AAAACAGTAT GAAACTCTCG AAAATCAATT AGCCTTTTTA TGCCAACAAG 8100
GTTTTTCACT AGAGAATGCA TTATATGCAC TCAGCGCTGT GGGGCATTTT ACTTTAGGTT GCGTATTGGA AGATCAAGAG CATCAAGTCG CTAAAGAAGA 8200
AAGGGAAACA CCTACTACTG ATAGTATGCC GCCATTATTA CGACAAGCTA TCGAATTATT TGATCACCAA GGTGCAGAGC CAGCCTTCTT ATTCGGCCTT 8300
GAATTGATCA TATGCGGATT AGAAAAACAA CTTAAATGTG AAAGTGGGTC TTAAAAGCAG CATAACCTTT TTCCGTGATG GTAACTTCAC GGTAACCAAG 8400
ATGTCGAGTT AACCACCCTT TAGATTCATA AAGCGAAAAT AATGCGGCTC CAACGTACCC ACCTAAATGG AAACGGCGTT CACTCCAATC TAAACACGCA 8500
CAACAGATTT TACGTGAATG TTTGGAAGGA ACGTCAATTC CCATTTCATG AAAATATTGA ATACCACTTA ATGTGATCAT TGAACCATTT TCAGTGATCC 8600
ATTGCTGTTG ACAAAGGGAA TCATAGATCT TAACGGCAAC TTCGCCAGCT AAATGATCAT AGCAAGTACG TGCTTTTCGT AAATGCACTG GCGTGGAAAC 8700
TTTGGCATGT ACGCCATGGT TTAAGGAGAT CCCCATCATA CTTTCCATCA ATTCAGCAAT ATCTTTTCCT GCTAGCCGAA AATAACGATG CTTGCCTTGA 8800
GCTACTACTG TGATTAGCTG GCAATCTAAT AATTTAGATA AATGACTGCT CGCCGTTGAA GCTGATATAT TCGCCACAGA ACTTAGCTCA GTGGCCGTCC 8900
AAGCTCGCCC ATCCATCAAA GCACTGAGTA TTTTAACTCG TGAAATGTCA GACATAGCCG CCCCTATCGC GGCTATTGAG GACTCAAAGG TAACCTCTTT 9000
TCGTATTAAA TTAGCCATCG CAAGTTCACT TTATTGCCCA AGGGAGCGTA ACAGATGCAG CCATACTATC ATTGTCCGTT ATTAATATCA GTTGGTTAGC 9100
ATGGTCACTG TATTGCACTA AAATATTAAT GTTATTCTCC GCCAATACTC GTGCTATTTC GCCAAGTTCC CCCGGTTTTT CCTGTTTTAA CTTACGAATT 9200
AATGGTGTCC GGATCGCAAG TACTAACAGT CCAGCTTGCT CTAGCGCTAT TTTAGCTTCC TTTCCTTGTT CAACAAGAAA ATGAGCATGG CATTCATCAC 9300
CAACCGTAAA TATCCCTCCC CCTTCCAATC CAATACCTTT ATTACCTAAT GTTTTTCCTA GTAATGCTAA TTGTCCTATT TGATTATCTA AAACAACGTG 9400
AACATCAAAC ATTATCCTTG TCCTTTTTAA ATGAATATTC GCGAGTAATA TGAGCAATAC TAATTTTGTA AAAATCAAAT ATTGACTCTC GCCCTTCTTG 9500
TTGAGCTTTC GCATGTAAAA CATGATTTTT CCATTGCAGA ACTGCGTATT CGTTTTCCCA CCAAGATAGC GATAACATTT TTCCTTCTGT AGCTAGACTT 9600
TGAAAACGTT CAATTGAAAT AAAACCAGCT ACATGACTTA ATAGTGGTCT TAACTCCTCA GCTAAAGTCA AATAGCGAGT TTGTTGGTCG GGTTGTATTT 9700
GCACCTCAAA TATTACAGCA ATCATATTTT TCTCCGTTAT TAATCAACAA ACAGAGTAAT CCACCCGAAA ATTAACACTT CGATAAGCAA CGAAATATAG 9800
AAAGGTCATG CTGCTGTTTT ATGTTGTATA TCACACTTCT TTAAATTGCT CGGCCTGCGC TTATCATGTT CTCCTTCTCT TATAATTTTG TTTATTATTT 9900
ATACTTTTTT ATTTTTTGCT ATCACCGAAA ATAGTGCGGA TCCCGCATGG TATTTAGGTT TACCCATCAT TAAATACCAT TGTTGTTATT TTAATCTTTT 10000
TAATATTTCA TGATTAAGAT CACACTAAAA TTATGACCCT ATTAACTAAA AGTTATGGAT ACCCTAATAA AACTCATTGT TAAAGATTAG TTAACCAAAG 10100
TAACTTCATT TTTCACTATT GTTAAATTGT TATAGTGAAA ATTCTGGTAA ACTAATAGAG GTAAAAAAAT GATCCTAGAT GCCAGTTATA CATTATTAGT 10200
CGCATGTATC GCGCTACTCA TAGGAATGTT TGTCGTAAAA TTTACCCCGT TCCTACAAAA AAACCACATA CCAGAAGCCG TCGTTGGTGG CTTTATTGTT 10300
GCAATTGTTC TGTTAATTAT TGATAAAACA TCAGGTTATT CGTTTACTTT TGATGCTTCA TTGCAAAGTT TATTAATGCT CACATTCTTT TCCTCTATCG 10400
GGCTAAGTTC TGACTTTTCT CGACTGATTA AAGGAGGAAA GCCGTTAGTT CTATTAACTA TTGCAGTAAC GATCCTAATC GCCATTCAAA ATACTGTCGG 10500
CATGAGTATG GCTGTCATGA TGAATGAAAG TCCATTTATT GGCTTAATTG CAGGTTCAAT TACTCTAACA GGTGGTCATG GTAATGCCGG AGCATGGGGC 10600
CCTATTCTCG CTGATAAATA TGATGTAACA GGCGCCGTTG AATTAGCGAT GGCTTGTGCA ACACTTGGAT TAGTGTTGGG TGGTTTAGTT GGCGGCCCTG 10700
TTGCCCGTCA TCTTTTGAAA AAGGTCTCTA TTCCTAAAAC AACCGAGCAA GAGCGCGACA CTATCGTTGA AGCTTTTGAG CAACCAAGCG TCAAAAGAAA 10800
AATCAATGCA AATAACGTTA TTGAAACCAT TTCAATGCTG ATTATCTGTA TTGTTGTTGG TGGCTATATC AGTGCATTGT TTAAAGATAC TTTTCTGCAA 10900
CTGCCTACTT TTGTCTGGTG TTTATTTGTC GGTATTATTA TCCGTAATAC ACTGACTCAT GTATTTAAAC ACGAAGTGTT TGAGCCGACC GTCGATGTAT 11000
TAGGTAGCGT TGCTTTATCG CTTTTCTTGG CAATGGCGTT AATGTCATTA AAATTTGGTC AATTGGCAAG CATGGCAGGG CCAGTATTAA TTATCATTGC 11100
TGTACAAACT GTTGTCATGG TGCTATTTGC CTGCTTTGTC ACCTTCAAAA TGATGGGCAA AGATTATGAT GCTGTCGTGA TCAGCGCGGG TCACTGTGGC 11200
TTTGGTATGG GAGCAACACC AACAGCAATT GCGAATATGC AAACAGTCAC AAAAGCATTT GGACCATCAC ATAAAGCTTT CCTTGTCGTT CCTATGGTCG 11300
GTGCCTTTAT TGTTGATATT TCAAACAGTA TCTTAATTAA AATATTTATT GAAATTGGTA CATACTTTAC CTAATAGCTA CACACTACTC GGCGTACTTC 11400
TCCTAACAAT TTATTATAGG GCAGTATGCC GAGCCGCTTT CTTACCCCGT ATATTCCCCT AGTCAATCTA TTTAGCTTGC ACGTTTACGA ATTAATTCTC 11500
GTGACAGCTA AACCAAAATT TGAATTATGA CGAGTATATC TGATTATTTA TACTTTATTC GTTAGAATAG TCCGTAGAAA TAAATAATCA GTAGGCTACA 11600
TGGAATGAAA TTAAGACATC TCGATATCTT TTATGCTGTA ATGACTTGTG GTTCCTTAAC GCGTGCGGCT GAAGTTTTAC ATATTTCTCA ACCCGCGGCG 11700
AGTAAAGCAC TCAAACATGC TGAGCACTGA GAGATCCCCT CATAATTTCC CCAAAACGTA ACCATGTGTG AATAGATTTT GAGTAAGCAG GGTTGCAGCC 11800
ACGAGTGAGT CTTCCCTTGT TATTGTGTAG CCAGAATGCC GCAAAACTTC CATGCCTAAG CGAACTGTTG AGAGTACGTT TCGATTTCTG ACTGTGTTAG 11900
CCTGGAAGTG CTTGTCCCAA CCTTGTTTCT GAGCATGAAC GCCCGCAAGC CAACATGTTA GTTGAAGCAT CAGGGCGATT AGCAGCATGA TATCAAAACG 12000
CTCTGAGCTG CTCGTTCGGC TATGGCGTAG GCCTAGTCCG TAGGCAGGAC TTTTCAAGTC TCGGAAGGTT TCTTCAATCT GCATTCGCTT CGAATAGATA 12100
TTAACAAGTT GTTTGGGTGT TCGAATTTCA ACAGGTAAGT TAGTTGCTAG AATCCATGGC TCCTTTGCCG ACGCTGAGTA GATTTTAGGT GACGGGTGGT 12200
GACAATGAGT CCGTGTCGAG CGCTGATTTT TTCGGCCTTT AGAGCGAGAT TTATACAATA GAATTTGGCA TGAGATTGGA TTGCTTTTAG TCAGCCTCTT 12300
ATAGCCTAAA GTCTTTGAGT GACTAGATGA CATATCATGT AAGTTGCTGA TAGGTTTCCA GTTTTCCGCT CCTAGGTCTG CATATTGTAC TTTTCCTCTT 12400
ACTCGACTTA ACCAGTACCA ACCCAGCTTC TCAACGGATT TATACCATGG CACTTTAAAG CCAGCATCAC TGACAATGAG CGGTGTGGTG TTACTCGGTA 12500
GAATGCTCGC AAGGTCGGCT AGAAATTGGT CATGAGCTTT CTTTGAACAT TGCTCTGAAA GCGGGAACGC TTTCTCATAA AGAGTAACAG AACGACCGTG 12600
TAGTGCGACT GAAGCTCGCA ATACCATAAG CCGTTTTTGC TCACGGATAT CAGACCAGTC AACAAGTACA ATGGGCATCG TATTGCCCGA ACAGATAAAG 12700
CTAGCATGCC AACGGTATAC AGCGAGTCGC TCTTTGTGGA GGTGACGATT ACCTAACAAT CGGTCGATTC GTTTGATGTT ATGTTTTGTT CTCGCTTTGG 12800
TTGGCAGGTT ACGGCCAAGT TCGGTAAGAG TGAGAGTTTT ACAGTCAAGT AAGGCGTGGC AAGCCAACGT TAAGCTGTTG AGTCGTTTTA AGTGTAATTC 12900
GGGGCAGAAT TGGTAAAGAG AGTCGTGTAA AATATCGAGT TCGCACATTT TGTTGTCTGA TTATTGATTT TTGGCGAAAC CATTTGATCA TATGACAAGA 13000
TGTGTATCTA CCTTAACTTA ATGATTTTGA TAAAAATCAT TAGGGGATTC ATCAGTATCA GGCTGCGTCG GCGCGCTCAC AACAGGTTCG GCTTCGCCCT 13100
GCAATTGTGT GTCCTGCGCT ATCCCGGCCG GGTGCTGGCT CCAGGCGAAC TGATCCCTGC AGAGGTCATC GAATTTATCG GAGCGCAGCT TGGCCTGGGT 13200
GCCGACGATC TCGTAGACTA TGCTGCCCGC GAGGAAACAC GGCACGAGCA TCTTGCCGAG TTACGGGGGC TCTACGGCTT CCGCACCTTC TCCGGACGTG 13300
GTGCGAGCGA GCTGAAGGAA TGGTTGTTCC GAGAAGCCGA GATGGCGGTG TCGAACGAGG ATATCGCCCG TCGCTTCGTA GCCGAGTGCC GACGCACCCG 13400
CACTGTCCTT CCCGCGACAT CCACGATCGA GCGGCTTTGT GCCGCGGCTC TCGTCGATGC CGAGCGACGC ATCGAGACGA GGATCGCCAG TCGGCTGCCT 13500
ATGTCGATCC GAGAACAGTT GCTGGCATTG CTCGAGGAGA CGGCTGATGA TCGGGTGACC CGTTTTGTGT GGCTGCGCCA GTTCGAGCCT GGCTCGAACT 13600
CTTCGTCGGC CAACCGGCTG CTCGACCGGC TCGAATATCT GCAACGCATC GATCTCCCCG AGGATCTGCT TGCCGGCGTT CCTGCCCATC GGGTGACTCG 13700
TCTGCGCAGG CAGGGTGAAC GGTATTATGC CGACGGCATG CGCGATCTCC CGGAGGACAG GCGGCTTGCG ATCTTGGCTG TTTGCGTCTC GGAATGGCAG 13800
GCGATGTTGG CCGACGCAGT GGTCGAAACC CACGACCGGA TCGTCGGCCG TCTCTACCGT GCTTCGGAGC GTATTTGCCA TGCAAAGGTC GCAGACGAAG 13900
CGGGGGTGGT GCGTGACACC CTGAAATCCT TCGCCGAGAT CGGGGGCGCC CTGGTCGATG CACAGGATGA TGGCCAGCCG CTGGGCGATG TCATCGCGAG 14000
TGGGTCAGGG TGGGACGGCT TAAAAACCCT TGTTGCAATG GCAACCAGGC TGACCGCCAC CATGGCCGAC GATCCGCTCA ATCATGTGCT CGACGGTTAT 14100
CACCGCTTCC GCCGATACGC TCCACGCATG TTGCGCCTGC TCGATCTGCG AGCTGCGCCC GTTGCACTGC CGCTTCTGGA AGCGGTGACG GCCCTTCGTA 14200
CCGGTTTGAA CGATGCCGCG ATGACCAGCT TCTTGCGGCC CAGCTCGAAA TGGCATCGCC ACCTTCGGGC CCAGAGGGCT GGCGACGCTC GCCTATGGGA 14300
GATCGCGGTG CTGTTCCATC TGCGCGATGC GTTCCGCTCC GGAGATGTCT GGCTTACTAG GTCCCGGCGC TATGGCGATC TGAAACACGC ACTCGTTCCG 14400
GCACAATCCA TCGCGGAAGG CGGTCGTCTC GCTGTGCCAT TGCGGCCGGA GGAATGGCTG GCAGACCGGC AAGCTCGCCT CGACATGCGG TTGCGCGAGC 14500
TTGGCCGTGC CGCTCGCGCA GGCACGATCC CGGGCGGGTC GATTGAAAAC GGCGTTCTGC ATATCGAGAA ACTCGAAGCC GCCGCGCCGA CAGGCGCCGA 14600
AGATCTGGTG CTCGATCTCT ACAAGCAGAT CCCGCCCACG CGCATCACCG ATCTCCTGCT GGAGGTGGAT GCGGCGACCG GCTTCACCGA AGCGTTCACC 14700
CATCTGCGCA CAGGAGCACC CTGCGCTGAC CGGATCGGGC TAATGAACGT TATCTTGGCG GAAGGGATCA ACCTCGGCTT GCGCAAAATG GCGGATGCGA 14800
CAAACACCCA CACCTTCTGG GAATTGATCC GCATTGGACG GTGGCATGTC GAGGGCGAAG CCTATGACCG GGCGCTGGCC ATGGTGGTCG AGGCACAGGC 14900
AGCGTTACCC ATGGCCCGGT TCTGGGGCAT GGGCACGTCG GCTTCGAGCG ACGGACAGTT CTTCGTCGCT ACAGAGCAAG GTGAGGCCAT GAACCTGGTC 15000
AACGCGAAAT ATGGCAATAC CCCGGGCCTG AAAGCCTATA GCCACGTCTC CGACCAATAT GCGCCGTTCG CAACCCAGGT GATTCCTGCA ACGGCAAGCG 15100
AAGCGCCTTA CATCCTCGAT GGCCTGCTGA TGAACGATGC TGGACGCCAT ATCCGCGAGC AGTTCACCGA CACGGGCGGC TTCACCGATC ACGTCTTTGC 15200
CGCATGTGCC ATTCTCGGCT ACCGGTTCGC TCCGCGCATC CGCGACCTGC CATCCAAACG GCTCTACGCG TTCAATCCGT CGGCCGCCCC GGCGCACCTG 15300
CGAGCGTTGA TCGGCGGAAA GGTCAACCAA GCCATGATCG AGCGCAATTG GCCCGACATC CTGCGCATCG CCGCCACCAT TGCTGCCGGG ACCGTCGCGC 15400
CAAGCCAGAT TCTGCGGAAA CTCGCCTCCT ATCCGCGGCA GAACGAGCTC GCGACAGCCC TGCGGGAAGT CGGTCGCGTC GAGCGCACCC TGTTCATGAT 15500
CGACTGGATT CTGGATGCCG AACTCCAACG GCGTGCCCAG ATCGGGCTCA ACAAAGGCGA AGCTCATCAT GCGCTGAAGC GGGCAATCAG CTTCCACCGC 15600
CGCGGTGAAA TCCGCGACCG TTCCGCCGAA GGCCAGCATT ACCGCATCGC CGGCATGAAT CTGCTCGCCG CCATCATCAT CTTCTGGAAC ACCATGAAGC 15700
TCGGCGAGGT CGTTGCAAAC CAGAAACGCG ATGGAAAGCT GCTATCGCCC GATCTCTTGG CCCATGTTTC GCCGCTCGGA TGGGAACACA TCAATCTCAC 15800
CGGAGAATAT CGCTGGCCAA AGCCTTAGCG TAGGATTCCG CCCCCTCCCG CAAACGACCC C
|
|
|
|
Recombination Sites |
|
|
Name |
Coordinates |
Gene |
Sequence |
res |
3565-3786 |
222 |
TGTCCCGTTC GACACCTGCG GCGCGCAAGG CGTCGTGCTG CAGGTCGAGA GACTGCGAGC CATCGGCTTT GGAGACGCGG GCATATCCGA TCAGCATGTA TCACAAACGT TGGTTTGAGG CGGCGCTTCG GCCACGATTG CATTGACCTC TGGAAATGTA TCTCAACCAG CTTCATAAAC AAAGCGTCTT GAACGCTATC AGATTTTGAA AAAGGAACAT GT |
|
ORFs |
|
|
Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
APH(6)-Id (ARO:3002660) |
Tn5393.8 |
107-952 |
Passenger Gene |
Antibiotic Resistance |
- |
APH(3'')-Ib (ARO:3002639) |
Tn5393.8 |
943-1746 |
Passenger Gene |
Antibiotic Resistance |
- |
orfAB |
IS1133 |
1853-2982 |
Transposase |
|
- |
orfB |
IS1133 |
1853-2710 |
Transposase |
|
- |
orfA |
IS1133 |
2707-2982 |
Accessory Gene |
Regulator |
- |
tnpR |
Tn5393.8 |
3050-3661 |
Accessory Gene |
Resolvase |
- |
tnp |
IS10R |
4016-5224 |
Transposase |
|
+ |
tetD |
Tn10 |
5234-5650 |
Passenger Gene |
Antibiotic Resistance |
- |
tetC |
Tn10 |
5738-6331 |
Passenger Gene |
Antibiotic Resistance |
+ |
tet(B) (ARO:3000166) |
Tn10 |
6444-7649 |
Passenger Gene |
Antibiotic Resistance |
- |
tetR (ARO:3003479) |
Tn10 |
7728-8354 |
Passenger Gene |
Antibiotic Resistance |
+ |
jemC |
Tn10 |
8332-9018 |
Passenger Gene |
Other |
- |
CPT07_26605 |
Tn10 |
9026-9412 |
Passenger Gene |
Hypothetical |
- |
jemB |
Tn10 |
9405-9725 |
Passenger Gene |
Other |
- |
jemA |
Tn10 |
10169-11374 |
Passenger Gene |
Other |
+ |
tnp |
IS10L |
11740-12948 |
Transposase |
|
- |
tnpA |
Tn5393.8 |
13000-15828 |
Transposase |
|
+ |
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
APH(6)-Id (ARO:3002660) |
APH(6)-Id |
Tn5393.8 |
846 |
107-952 |
- |
Class: | Passenger Gene |
Sub Class: | Antibiotic Resistance |
Function: | antibiotic inactivation (ARO:0001004) |
Target: | aminoglycoside antibiotic (ARO:0000016) |
Sequence Family: | APH(6) (ARO:3000151) |
Comment: | strB, orfI || strict match to reference sequence for ARO:3002660 (bitscore: 568) |
Protein Sequence:
|
MGLMFMPPVF PAHWHVSQPV LIADTFSSLV WKVSLPDGTP AIVKGLKPIE DIADELRGAD YLVWRNGRGA VRLLGRENNL MLLEYAGERM LSHIVAEHGD YQATEIAAEL MAKLYAASEE PLPSALLPIR DRFAALFQRA RDDQNAGCQT DYVHAAIIAD QMMSNASELR GLHGDLHHEN IMFSSRGWLV IDPVGLVGEV GFGAANMFYD PADRDDLCLD PRRIAQMADA FSRALDVDPR RLLDQAYAYG CLSAAWNADG EEEQRDLAIA AAIKQVRQTS Y
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
APH(3'')-Ib (ARO:3002639) |
APH(3'')-Ib |
Tn5393.8 |
804 |
943-1746 |
- |
Class: | Passenger Gene |
Sub Class: | Antibiotic Resistance |
Function: | antibiotic inactivation (ARO:0001004) |
Target: | aminoglycoside antibiotic (ARO:0000016) |
Sequence Family: | APH(3'') (ARO:3000127) |
Comment: | strA, orfH || perfect match to reference sequence for ARO: 3002639 |
Protein Sequence:
|
MNRTNIFFGE SHSDWLPVRG GESGDFVFRR GDGHAFAKIA PASRRGELAG ERDRLIWLKG RGVACPEVIN WQEEQEGACL VITAIPGVPA ADLSGADLLK AWPSMGQQLG AVHSLSVDQC PFERRLSRMF GRAVDVVSRN AVNPDFLPDE DKSTPQLDLL ARVERELPVR LDQERTDMVV CHGDPCMPNF MVDPKTLQCT GLIDLGRLGT ADRYADLALM IANAEENWAA PDEAERAFAV LFNVLGIEAP DRERLAFYLR LDPLTWG
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
orfAB |
OrfAB |
IS1133 |
1130 |
1853-2982 |
- |
Class: | Transposase |
Transpoase Chemistry: | DDE |
Comment: | fusion protein from -1 programmed frameshifting between orfA and orfB |
Protein Sequence:
|
MSLKHSDEFK RDAVRIALTS GLTRRQVASD LSIGLSTLGK WIASISDETK IPTQDTDLLR ENERLRKENR ILREEREILK KAAIFFAVQK L*DFSLLRIT VALSHVHAYV V*WA*QIVVY VHGNAVLHHC ASVVILYF*R IYVSSIGCVW GAMVGRV*QK S*KRWACRLG SVGLDV*CAR ITLQLFERVN SNGQRIVIIP STLHRTY*NK TLAQAHPTRN GQAISLMFGP EKDGSILLLS LTCIPVA*LA GQQVID*SRI LH*GH*IWRW LYANHHRVVF NTQTVGANIA LMNIKSYCSN INCCRP*AGK AIVLITPQ*K ASLNH*RLS* FGADTGKQGE ILRLQSSNI* MAFIIHAEDI QHSAGNRRWH LRKKPL
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
orfB |
OrfB |
IS1133 |
858 |
1853-2710 |
- |
Class: | Transposase |
Function: | Nucleic acid binding (GO:0003676) |
Transpoase Chemistry: | DDE |
Comment: | frameshift required| 5'-end of tnp gene |
Protein Sequence:
|
MRFQFITDYR GSLSRSRICR LMGVTDRGLR AWKRRPPSLR QRRDLILLAH IREQHRLCLG SYGRPRMTEE LKALGLQVGQ RRVGRLMRQN NITVVRTRKF KRTTDSHHTF NIAPNLLKQD FSASAPNQKW AGDITYVWTR EGWVYLAVIL DLYSRRVIGW ATGDRLKQDL ALRALNMALA LRKPPPGCIQ HTDRGSQYCA HEYQKLLLKH QLLPSMSGKG NCFDNSAVES FFKSLKAELI WRRHWQTRRD IEIAIFEYIN GFYNPRRRHS TLGWKSPVAF EKKAA
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
orfA |
OrfA |
IS1133 |
276 |
2707-2982 |
- |
Class: | Accessory Gene |
Sub Class: | Regulator |
Function: | transposase activity (GO:0004803) |
Comment: | orfA, together with orfB, encodes a fusion protein formed by translational frame-shifting that is the transposase for IS1133 |
Protein Sequence:
|
MSLKHSDEFK RDAVRIALTS GLTRRQVASD LSIGLSTLGK WIASISDETK IPTQDTDLLR ENERLRKENR ILREEREILK KAAIFFAVQK L
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpR |
TnpR |
Tn5393.8 |
612 |
3050-3661 |
- |
Class: | Accessory Gene |
Sub Class: | Resolvase |
Function: | recombinaseactivity (GO:0000150) |
Transpoase Chemistry: | Serine |
Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MLIGYARVSK ADGSQSLDLQ HDALRAAGVE RDNIYDDLAS GGRDDRPGLT ACLKSLRDGD VLVVWKLDRL GRSLAHLVNT VKELSDRKIG LRVLTGKGAQ IDTTTASGRM VFGIFATLAE FERDLIRERT MAGLASARAR GRKGGRKFAL TKAQVRLAQA AMAQRDTSVS DLCKELGIER VTLYRYVGPK GELRDHGKHV LGLT
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnp |
Tnp |
IS10R |
1209 |
4016-5224 |
+ |
Class: | Transposase |
Function: | transposase |
Transpoase Chemistry: | DDE |
Comment: | minor sequence variant-99.9% identical to reference sequence for tnp (IS10R) |
Protein Sequence:
|
MCELDILHDS LYQFCPELHL KRLNSLTLAC HALLDCKTLT LTELGRNLPT KARTKHNIKR IDRLLGNRHL HKERLAVYRW HASFICSGNT MPIVLVDWSD IREQKRLMVL RASVALHGRS VTLYEKAFPL SEQCSKKAHD QFLADLASIL PSNTTPLIVS DAGFKVPWYK SVEKLGWYWL SRVRGKVQYA DLGAENWKPI SNLHDMSSSH SKTLGYKRLT KSNPISCQIL LYKSRSKGRK NQRSTRTHCH HPSPKIYSAS AKEPWVLATN LPVEIRTPKQ LVNIYSKRMQ IEETFRDLKS PAYGLGLRHS RTSSSERFDI MLLIALMLQL TC*LAGVHAQ KQGWDKHFQA NTVRNRNVLS TVRLGMEVLR HSGYTITRED LLVAATLLAQ NLFTHGYALG KL
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tetD |
TetD |
Tn10 |
417 |
5234-5650 |
- |
Class: | Passenger Gene |
Sub Class: | Antibiotic Resistance |
Target: | tetracycline antibiotic (ARO:3000050) |
Comment: | no match in CARD |
Protein Sequence:
|
MYIEQHSRYQ NKANNIQLRY DDKQFHTTVI KDVLLWIEHN LDQSLLLDDV ANKAGYTKWY FQRLFKKVTG VTLASYIRAR RLTKAAVELR LTKKTILEIA LKYQFDSQQS FTRRFKYIFK VTPSYYRRNK LWELEAMH
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tetC |
TetC |
Tn10 |
594 |
5738-6331 |
+ |
Class: | Passenger Gene |
Sub Class: | Antibiotic Resistance |
Function: | DNA binding (GO:0003677) |
Target: | tetracycline antibiotic (ARO:3000050) |
Sequence Family: | Bacterial regulatory proteins, tetR family (Pfam:PF00440) |
Comment: | no match in CARD||99.8% identical to TnCentral reference sequence for tetC (Tn10) |
Protein Sequence:
|
MENKNHQQEN FKSTYQSLVN SARILFVEKG YQAVSIDEIS GKALVTKGAF YHHFKNKKQL LSACYKQQLI MIDAYITTKT DLTNGWSALE SIFEHYLDYI IDNNKNLIPI QEVMPIIGWN ELEKISLEYI TGKVNAIVSK LIQENQLKAY DDDVLKNLLN GWFMHIAIHA KNLKELADKK GQFIAIYRGF LLSLKDK
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tet(B) (ARO:3000166) |
Tet(B) |
Tn10 |
1206 |
6444-7649 |
- |
Class: | Passenger Gene |
Sub Class: | Antibiotic Resistance |
Function: | antibiotic efflux (ARO:0010000) |
Transpoase Chemistry: | antibiotic efflux (ARO:0010000) |
Target: | tetracycline antibiotic (ARO:3000050) |
Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
Comment: | strict match to reference sequence for ARO:3000166 (bitscore:786)||99.9% identical to TnCentral reference sequence for tet(B) (Tn10)||Synonym: tetB |
Protein Sequence:
|
MNSSTKIALV ITLLDAMGIG LIMPVLPTLL REFIASEDIA NHFGVLLALY ALMQVIFAPW LGKMSDRFGR RPVLLLSLIG ASLDYLLLAF SSALWMLYLG RLLSGITGAT GAVAASVIAD TTSASQRVKW FGWLGASFGL GLIAGPIIGG FAGEISPHSP FFIAALLNIV AFLVVMFWFR ETKNTRDNTD TEVGVETQSN SVYITLFKTM PILLIIYFSA QLIGQIPATV WVLFTENRFG WNSMMVGFSL AGLGLLHSVF QAFVAGRIAT KWGEKTAVLL GFIADSSAFA FLAFISEGWL VFPVLILLAG GGIALPALQG VMSIQTKSHQ QGALQGLLVS LTNATGVIGP LLFAVIYNHS LPIWDGWIWI IGLAFYCIII LLSMTFMLTP QAQGSKQETS A
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tetR (ARO:3003479) |
TetR |
Tn10 |
627 |
7728-8354 |
+ |
Class: | Passenger Gene |
Sub Class: | Antibiotic Resistance |
Function: | antibiotic target alteration (ARO:0001001); antibiotic efflux (ARO:0010000) |
Transpoase Chemistry: | repressor of the tetracycline resistance element |
Target: | tetracycline antibiotic (ARO:3000050) |
Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
Comment: | perfect match to reference sequence for ARO:3003479 |
Protein Sequence:
|
MMSRLDKSKV INSALELLNE VGIEGLTTRK LAQKLGVEQP TLYWHVKNKR ALLDALAIEM LDRHHTHFCP LEGESWQDFL RNNAKSFRCA LLSHRDGAKV HLGTRPTEKQ YETLENQLAF LCQQGFSLEN ALYALSAVGH FTLGCVLEDQ EHQVAKEERE TPTTDSMPPL LRQAIELFDH QGAEPAFLFG LELIICGLEK QLKCESGS
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
jemC |
JemC |
Tn10 |
687 |
8332-9018 |
- |
Class: | Passenger Gene |
Sub Class: | Other |
Sequence Family: | HTH ArsR-type DNA-binding domain (InterPro:IPR001845) |
Comment: | N-terminal 100 amino acids similar to bacterial transcriptional repressors and metal-binding proteins (PMID:10781570) |
Protein Sequence:
|
MANLIRKEVT FESSIAAIGA AMSDISRVKI LSALMDGRAW TATELSSVAN ISASTASSHL SKLLDCQLIT VVAQGKHRYF RLAGKDIAEL MESMMGISLN HGVHAKVSTP VHLRKARTCY DHLAGEVAVK IYDSLCQQQW ITENGSMITL SGIQYFHEMG IDVPSKHSRK ICCACLDWSE RRFHLGGYVG AALFSLYESK GWLTRHLGYR EVTITEKGYA AFKTHFHI
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
CPT07_26605 |
CPT07_26605 |
Tn10 |
387 |
9026-9412 |
- |
Class: | Passenger Gene |
Sub Class: | Hypothetical |
Comment: | Amino acid-binding protein |
Protein Sequence:
|
MFDVHVVLDN QIGQLALLGK TLGNKGIGLE GGGIFTVGDE CHAHFLVEQG KEAKIALEQA GLLVLAIRTP LIRKLKQEKP GELGEIARVL AENNINILVQ YSDHANQLIL ITDNDSMAAS VTLPWAIK
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
jemB |
JemB |
Tn10 |
321 |
9405-9725 |
- |
Class: | Passenger Gene |
Sub Class: | Other |
Sequence Family: | Antibiotic biosynthesis monooxygenase (Pfam:PF03992) |
Protein Sequence:
|
MIAVIFEVQI QPDQQTRYLT LAEELRPLLS HVAGFISIER FQSLATEGKM LSLSWWENEY AVLQWKNHVL HAKAQQEGRE SIFDFYKISI AHITREYSFK KDKDNV
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
jemA |
JemA |
Tn10 |
1206 |
10169-11374 |
+ |
Class: | Passenger Gene |
Sub Class: | Other |
Function: | glutamate:sodium symporter activity (GO:0015501) |
Comment: | sodium-dependent glutamate permease |
Protein Sequence:
|
MILDASYTLL VACIALLIGM FVVKFTPFLQ KNHIPEAVVG GFIVAIVLLI IDKTSGYSFT FDASLQSLLM LTFFSSIGLS SDFSRLIKGG KPLVLLTIAV TILIAIQNTV GMSMAVMMNE SPFIGLIAGS ITLTGGHGNA GAWGPILADK YDVTGAVELA MACATLGLVL GGLVGGPVAR HLLKKVSIPK TTEQERDTIV EAFEQPSVKR KINANNVIET ISMLIICIVV GGYISALFKD TFLQLPTFVW CLFVGIIIRN TLTHVFKHEV FEPTVDVLGS VALSLFLAMA LMSLKFGQLA SMAGPVLIII AVQTVVMVLF ACFVTFKMMG KDYDAVVISA GHCGFGMGAT PTAIANMQTV TKAFGPSHKA FLVVPMVGAF IVDISNSILI KIFIEIGTYF T
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnp |
Tnp |
IS10L |
1209 |
11740-12948 |
- |
Class: | Transposase |
Function: | transposase |
Transpoase Chemistry: | DDE |
Protein Sequence:
|
MCELDILHDS LYQFCPELHL KRLNSLTLAC HALLDCKTLT LTELGRNLPT KARTKHNIKR IDRLLGNRHL HKERLAVYRW HASFICSGNT MPIVLVDWSD IREQKRLMVL RASVALHGRS VTLYEKAFPL SEQCSKKAHD QFLADLASIL PSNTTPLIVS DAGFKVPWYK SVEKLGWYWL SRVRGKVQYA DLGAENWKPI SNLHDMSSSH SKTLGYKRLT KSNPISCQIL LYKSRSKGRK NQRSTRTHCH HPSPKIYSAS AKEPWILATN LPVEIRTPKQ LVNIYSKRMQ IEETFRDLKS PAYGLGLRHS RTSSSERFDI MLLIALMLQL TCWLAGVHAQ KQGWDKHFQA NTVRNRNVLS TVRLGMEVLR HSGYTITRED SLVAATLLTQ NLFTHGYVLG KL
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpA |
TnpA |
Tn5393.8 |
2829 |
13000-15828 |
+ |
Class: | Transposase |
Function: | transposase activity (GO:0004803) |
Transpoase Chemistry: | DDE |
Comment: | probably N-terminal truncation by Tn10 insertion |
Protein Sequence:
|
MCIYLNLMIL IKIIRGFISI RLRRRAHNRF GFALQLCVLR YPGRVLAPGE LIPAEVIEFI GAQLGLGADD LVDYAAREET RHEHLAELRG LYGFRTFSGR GASELKEWLF REAEMAVSNE DIARRFVAEC RRTRTVLPAT STIERLCAAA LVDAERRIET RIASRLPMSI REQLLALLEE TADDRVTRFV WLRQFEPGSN SSSANRLLDR LEYLQRIDLP EDLLAGVPAH RVTRLRRQGE RYYADGMRDL PEDRRLAILA VCVSEWQAML ADAVVETHDR IVGRLYRASE RICHAKVADE AGVVRDTLKS FAEIGGALVD AQDDGQPLGD VIASGSGWDG LKTLVAMATR LTATMADDPL NHVLDGYHRF RRYAPRMLRL LDLRAAPVAL PLLEAVTALR TGLNDAAMTS FLRPSSKWHR HLRAQRAGDA RLWEIAVLFH LRDAFRSGDV WLTRSRRYGD LKHALVPAQS IAEGGRLAVP LRPEEWLADR QARLDMRLRE LGRAARAGTI PGGSIENGVL HIEKLEAAAP TGAEDLVLDL YKQIPPTRIT DLLLEVDAAT GFTEAFTHLR TGAPCADRIG LMNVILAEGI NLGLRKMADA TNTHTFWELI RIGRWHVEGE AYDRALAMVV EAQAALPMAR FWGMGTSASS DGQFFVATEQ GEAMNLVNAK YGNTPGLKAY SHVSDQYAPF ATQVIPATAS EAPYILDGLL MNDAGRHIRE QFTDTGGFTD HVFAACAILG YRFAPRIRDL PSKRLYAFNP SAAPAHLRAL IGGKVNQAMI ERNWPDILRI AATIAAGTVA PSQILRKLAS YPRQNELATA LREVGRVERT LFMIDWILDA ELQRRAQIGL NKGEAHHALK RAISFHRRGE IRDRSAEGQH YRIAGMNLLA AIIIFWNTMK LGEVVANQKR DGKLLSPDLL AHVSPLGWEH INLTGEYRWP KP
|
|
Internal Transposable Elements (TE) |
|
|
TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
IS1133-Z12167 |
IS1133 |
Insertion Sequence |
1815-3046 |
1232 |
Tn10-AF162223 |
Tn10 |
Transposon |
3909-13055 |
9147 |
IS10R-AF162223 |
IS10R |
Insertion Sequence |
3909-5237 |
1329 |
IS10L-AF162223 |
IS10L |
Insertion Sequence |
11727-13055 |
1329 |
|
Internal Repeat Elements |
|
|
Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
IRL |
Tn5393.8 |
1-40 |
GGGGTCGTTT GCGGGAGAGG GCGAAATCCT ACGCTAAGGC |
IRR |
IS1133 |
1815-1841 |
TGGACTTGCA CCGGTTGTGT TCCGGTC |
IRL |
IS1133 |
3020-3046 |
CTGGCCTTGC TTTGGCTCCG TTCAGGT |
IRL |
IS10R |
3909-3925 |
CTGATGAATC CCCTAAT |
IRR |
IS10R |
5216-5237 |
TTTAATACTC CCCTAGAGAG TC |
IRR |
IS10L |
11727-11748 |
CTGAGAGATC CCCTCATAAT TT |
IRL |
IS10L |
13039-13055 |
TAATCCCCTA AGTAGTC |
IRRl |
Tn5393.8 |
15781-15861 |
ACCCTTGTGT AGTTAGAGTG GCCTCTTATA GCGACCGGTT TCGGAATCGC ATCCTAAGGC GGGGGAGGGC GTTTGCTGGG G |
|
References |
|
|
Johnson TJ, Thorsness JL, Anderson CP, Lynne AM, Foley SL, Han J, Fricke WF, McDermott PF, White DG, Khatri M, Stell AL, Flores C, Singer RS. Horizontal gene transfer of a ColV plasmid has resulted in a dominant avian clonal type of Salmonella enterica serovar Kentucky. PLoS One. 2010 Dec 22;5(12):e15524. doi: 10.1371/journal.pone.0015524. PubMed ID: 21203520
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