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| Name: Tn5393.11 |
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| Family: Tn3 Group: Tn163 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Yersinia ruckeri | Molecular Source: | plasmid pYR1 |
| Place of Origin: | USA | Date of Isolation: | 2007 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 81 bp) |  | GGGGTCGTTTGCGGGAGAGGGCGAAATCCTACGCTAAGGCTTTGGCCAACGATATTCTCCGGTAAGATTGATGTGTTCCCA |
| IRR (Length: 40 bp) | | GGGGTCGTTTGCGGGAGGGGGCGGAATCCTACGCTAAGGC |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTCGTTT GCGGGAGAGG GCGAAATCCT ACGCTAAGGC TTTGGCCAAC GATATTCTCC GGTAAGATTG ATGTGTTCCC AGGGGATAGG AGAAGTCGCT 100
TGATATCTAG TATGACGTCT GTCGCACCTG CTTGATCGCG GCCGCGATAG CTAGATCGCG TTGCTCCTCT TCTCCATCCG CGTTCCAAGC TGCGGAAAGG 200
CACCCATAAG CGTACGCCTG GTCGAGCAGG CGACGCGGAT CGACGTCCAG CGCACGAGAG AATGCGTCCG CCATCTGTGC AATGCGTCTA GGATCGAGAC 300
AAAGGTCGTC TCTGTCAGCC GGATCGTAGA ACATATTGGC GGCGCCAAAG CCCACTTCAC CGACCAGACC GACGGGATCT ATCACCAGCC AGCCGCGACT 400
GGAGAACATG ATGTTTTCAT GATGCAGATC GCCATGTAGC CCACGCAGTT CCGAGGCATT GCTCATCATT TGATCGGCTA TAATCGCCGC GTGGACGTAG 500
TCAGTTTGAC AACCTGCGTT TTGATCATCG CGCGCCCGCT GAAACAAAGC TGCAAAGCGA TCCCGGATCG GGAGAAGGGC AGAAGGCAGG GGTTCCTCAG 600
ATGCGGCATA CAGCTTCGCC ATTAGTTCCG CTGCAATTTC GGTCGCCTGG TAGTCGCCGT GCTCGGCAAC GATGTGAGAG AGCATTCGCT CCCCGGCATA 700
TTCGAGCAAC ATCAGATTGT TCTCACGACC GAGCAACCGG ACTGCTCCCC TCCCATTGCG CCATACCAGA TAGTCGGCCC CGCGCAGTTC ATCAGCAATG 800
TCTTCTATAG GTTTCAATCC CTTGACGATT GCAGGAGTCC CGTCTGGCAA TGAAACTTTC CAAACGAGGC TGGAAAAGGT GTCCGCAATG AGAACAGGTT 900
GCGAAACGTG CCAATGAGCA GGAAAAACAG GCGGCATGAA CATCAACCCC AAGTCAGAGG GTCCAATCGC AGATAGAAGG CAAGGCGTTC GCGGTCGGGG 1000
GCTTCGATCC CCAATACATT GAATAGGACA GCGAAGGCGC GCTCTGCTTC ATCTGGCGCT GCCCAGTTCT CTTCGGCGTT AGCAATCATG AGTGCCAAAT 1100
CGGCATAGCG ATCTGCTGTT CCGAGCCGCC CAAGGTCGAT CAGACCCGTG CATTGAAGAG TTTTAGGGTC CACCATGAAG TTCGGCATGC AGGGATCACC 1200
ATGGCAAACA ACCATATCGG TGCGCTCTTG GTCGAGCCGC ACCGGTAGCT CTCGTTCGAC ACGAGCCAAA AGATCGAGCT GCGGCGTACT CTTGTCCTCG 1300
TCCGGTAAGA AGTCGGGATT GACGGCATTG CGGGACACCA CATCAACGGC GCGTCCGAAC ATTCGCGACA GCCTGCGCTC AAACGGACAT TGATCAACCG 1400
ATAGGCTGTG AACAGCGCCA AGTTGCTGCC CCATTGACGG CCACGCTTTG AGCAAATCCG CTCCAGACAG ATCAGCCGCC GGTACTCCCG GAATTGCCGT 1500
TATCACCAAG CATGCACCCT CCTGTTCCTC CTGCCAGTTG ATCACCTCGG GGCAAGCCAC ACCTCGACCT TTGAGCCAAA TGAGGCGGTC ACGCTCTCCA 1600
GCGAGCTCAC CGCGGCGGGA AGCAGGTGCG ATTTTCGCGA AGGCATGCCC GTCACCACGT CGAAAAACAA AATCACCAGA TTCTCCGCCT CTGACAGGCA 1700
ACCAGTCAGA ATGCGATTCA CCAAAAAAAA TATTAGTTCG ATTCAATGGA GGTTCCTTCA GTTTTCTGAT GAAGCGCGGA GGTGGCTCAA CCTGCGAAAA 1800
GAAACGAGTT GCTACGTAAG TCCGAGAACA TGCTTTCCAT GGTCTTGCAC CGGTTGTGTT CCGGTCTATC TCTCATTTTA AGCGGCTTTT TTCTCAAATG 1900
CCACCGGCGA TTTCCAGCCG AGTGCTGATG AATCCCCTAA TGATTTTTAT CAAAATCATT AAGTTAAGGT AGATACACAT CTTGTCATAT GATCAAATGG 2000
TTTCGCCAAA AATCAATAAT CAGACAACAA AATGTGCGAA CTCGATATTT TACACGACTC TCTTTACCAA TTCTGCCCCG AATTACACTT AAAACGACTC 2100
AACAGCTTAA CGTTGGCTTG CCACGCCTTA CTTGACTGTA AAACTCTCAC TCTTACCGAA CTTGGCCGTA ACCTGCCAAC CAAAGCGAGA ACAAAACATA 2200
ACATCAAACG AATCGACCGA TTGTTAGGTA ATCGTCACCT CCACAAAGAG CGACTCGCTG TATACCGTTG GCATGCTAGC TTTATCTGTT CGGGCAATAC 2300
GATGCCCATT GTACTTGTTG ACTGGTCTGA TATCCGTGAG CAAAAACGGC TTATGGTATT GCGAGCTTCA GTCGCACTAC ACGGTCGTTC TGTTACTCTT 2400
TATGAGAAAG CGTTCCCGCT TTCAGAGCAA TGTTCAAAGA AAGCTCATGA CCAATTTCTA GCCGACCTTG CGAGCATTCT ACCGAGTAAC ACCACACCGC 2500
TCATTGTCAG TGATGCTGGC TTTAAAGTGC CATGGTATAA ATCCGTTGAG AAGCTGGGTT GGTACTGGTT AAGTCGAGTA AGAGGAAAAG TACAATATGC 2600
AGACCTAGGA GCGGAAAACT GGAAACCTAT CAGCAACTTA CATGATATGT CATCTAGTCA CTCAAAGACT TTAGGCTATA AGAGGCTGAC TAAAAGCAAT 2700
CCAATCTCAT GCCAAATTCT ATTGTATAAA TCTCGCTCTA AAGGCCGAAA AAATCAGCGC TCGACACGGA CTCATTGTCA CCACCCGTCA CCTAAAATCT 2800
ACTCAGCGTC GGCAAAGGAG CCATGGATTC TAGCAACTAA CTTACCTGTT GAAATTCGAA CACCCAAACA ACTTGTTAAT ATCTATTCGA AGCGAATGCA 2900
GATTGAAGAA ACCTTCCGAG ACTTGAAAAG TCCTGCCTAC GGACTAGGCC TACGCCATAG CCGAACGAGC AGCTCAGAGC GTTTTGATAT CATGCTGCTA 3000
ATCGCCCTGA TGCTTCAACT AACATGTTGG CTTGCGGGCG TTCATGCTCA GAAACAAGGT TGGGACAAGC ACTTCCAGGC TAACACAGTC AGAAATCGAA 3100
ACGTACTCTC AACAGTTCGC TTAGGCATGG AAGTTTTGCG GCATTCTGGC TACACAATAA CAAGGGAAGA CTCACTCGTG GCTGCAACCC TGCTTACTCA 3200
AAATCTATTC ACACATGGTT ACGTTTTGGG GAAATTATGA GGGGATCTCT CAGTGCTCAG CATGTTTGAG TGCTTTACTC GCCGCGGGTT GAGAAATATG 3300
TAAAACTTCA GCCGCACGCG TTAAGGAACC ACAAGTCATT ACAGCATAAA AGATATCGAG ATGTCTTAAT TTCATTCCAT GTAGCCTACT GATTATTTAT 3400
TTCTACGGAC TATTCTAACG AATAAAGTAT AAATAATCAG ATATACTCGT CATAATTCAA ATTTTGGTTT AGTTGTCACG AGAATTAATT CGTAAACGTG 3500
CAAGCTAAAT AGATTGACTA GGGGAATATA CGGGGTAAGA AAGCGGCTCG GCATACTGCC CTATAATAAA TTGTTAGGAG AAGTACGCCG AGTAGTGTGT 3600
AGCTATTAGG TAAAGTATGT ACCAATTTCA ATAAATATTT TAATTAAGAT ACTGTTTGAA ATATCAACAA TAAAGGCACC GACCATAGGA ACGACAAGGA 3700
AAGCTTTATG TGATGGTCCA AATGCTTTTG TGACTGTTTG CATATTCGCA ATTGCTGTTG GTGTTGCTCC CATACCAAAG CCACAGTGAC CCGCGCTGAT 3800
CACGACAGCA TCATAATCTT TGCCCATCAT TTTGAAGGTG ACAAAGCAGG CAAATAGCAC CATGACAACA GTTTGTACAG CAATGATAAT TAATACTGGC 3900
CCTGCCATGC TTGCCAATTG ACCAAATTTT AATGACATTA ACGCCATTGC CAAGAAAAGC GATAAAGCAA CGCTACCTAA TACATCGACG GTCGGCTCAA 4000
ACACTTCGTG TTTAAATACA TGAGTCAGTG TATTACGGAT AATAATACCG ACAAATAAAC ACCAGACAAA AGTAGGCAGT TGCAGAAAAG TATCTTTAAA 4100
CAATGCACTG ATATAGCCAC CAACAACAAT ACAGATAATC AGCATTGAAA TGGTTTCAAT AACGTTATTT GCATTGATTT TTCTTTTGAC GCTTGGTTGC 4200
TCAAAAGCTT CAACGATAGT GTCGCGCTCT TGCTCGGTTG TTTTAGGAAT AGAGACCTTT TTCAAAAGAT GACGGGCAAC AGGGCCGCCA ACTAAACCAC 4300
CCAACACTAA TCCAAGTGTT GCACAAGCCA TCGCTAATTC AACGGCGCCT GTTACACCAT ATTTATCAGC GAGAATAGGG CCCCATGCTC CGGCATTACC 4400
ATGACCACCT GTTAGAGTAA TTGAACCTGC AATTAAGCCA ATAAATGGAC TTTCATTCAT CATGACAGCC ATACTCATGC CGACAGTATT TTGAATGGCG 4500
ATTAGGATCG TTACTGCAAT AGTTAATAGA ACTAACGGCT TTCCTCCTTT AATCAGTCGA GAAAAGTCAG AACTTAGCCC GATAGAGGAA AAGAATGTGA 4600
GCATTAATAA ACTTTGCAAT GAAGCATCAA AAGTAAACGA ATAACCTGAT GTTTTATCAA TAATTAACAG AACAATTGCA ACAATAAAGC CACCAACGAC 4700
GGCTTCTGGT ATGTGGTTTT TTTGTAGGAA CGGGGTAAAT TTTACGACAA ACATTCCTAT GAGTAGCGCG ATACATGCGA CTAATAATGT ATAACTGGCA 4800
TCTAGGATCA TTTTTTTACC TCTATTAGTT TACCAGAATT TTCACTATAA CAATTTAACA ATAGTGAAAA ATGAAGTTAC TTTGGTTAAC TAATCTTTAA 4900
CAATGAGTTT TATTAGGGTA TCCATAACTT TTAGTTAATA GGGTCATAAT TTTAGTGTGA TCTTAATCAT GAAATATTAA AAAGATTAAA ATAACAACAA 5000
TGGTATTTAA TGATGGGTAA ACCTAAATAC CATGCGGGAT CCGCACTATT TTCGGTGATA GCAAAAAATA AAAAAGTATA AATAATAAAC AAAATTATAA 5100
GAGAAGGAGA ACATGATAAG CGCAGGCCGA GCAATTTAAA GAAGTGTGAT ATACAACATA AAACAGCAGC ATGACCTTTC TATATTTCGT TGCTTATCGA 5200
AGTGTTAATT TTCGGGTGGA TTACTCTGTT TGTTGATTAA TAACGGAGAA AAATATGATT GCTGTAATAT TTGAGGTGCA AATACAACCC GACCAACAAA 5300
CTCGCTATTT GACTTTAGCT GAGGAGTTAA GACCACTATT AAGTCATGTA GCTGGTTTTA TTTCAATTGA ACGTTTTCAA AGTCTAGCTA CAGAAGGAAA 5400
AATGTTATCG CTATCTTGGT GGGAAAACGA ATACGCAGTT CTGCAATGGA AAAATCATGT TTTACATGCG AAAGCTCAAC AAGAAGGGCG AGAGTCAATA 5500
TTTGATTTTT ACAAAATTAG TATTGCTCAT ATTACTCGCG AATATTCATT TAAAAAGGAC AAGGATAATG TTTGATGTTC ACGTTGTTTT AGATAATCAA 5600
ATAGGACAAT TAGCATTACT AGGAAAAACA TTAGGTAATA AAGGTATTGG ATTGGAAGGG GGAGGGATAT TTACGGTTGG TGATGAATGC CATGCTCATT 5700
TTCTTGTTGA ACAAGGAAAG GAAGCTAAAA TAGCGCTAGA GCAAGCTGGA CTGTTAGTAC TTGCGATCCG GACACCATTA ATTCGTAAGT TAAAACAGGA 5800
AAAACCGGGG GAACTTGGCG AAATAGCACG AGTATTGGCG GAGAATAACA TTAATATTTT AGTGCAATAC AGTGACCATG CTAACCAACT GATATTAATA 5900
ACGGACAATG ATAGTATGGC TGCATCTGTT ACGCTCCCTT GGGCAATAAA GTGAACTTGC GATGGCTAAT TTAATACGAA AAGAGGTTAC CTTTGAGTCC 6000
TCAATAGCCG CGATAGGGGC GGCTATGTCT GACATTTCAC GAGTTAAAAT ACTCAGTGCT TTGATGGATG GGCGAGCTTG GACGGCCACT GAGCTAAGTT 6100
CTGTGGCGAA TATATCAGCT TCAACGGCGA GCAGTCATTT ATCTAAATTA TTAGATTGCC AGCTAATCAC AGTAGTAGCT CAAGGCAAGC ATCGTTATTT 6200
TCGGCTAGCA GGAAAAGATA TTGCTGAATT GATGGAAAGT ATGATGGGGA TCTCCTTAAA CCATGGCGTA CATGCCAAAG TTTCCACGCC AGTGCATTTA 6300
CGAAAAGCAC GTACTTGCTA TGATCATTTA GCTGGCGAAG TTGCCGTTAA GATCTATGAT TCCCTTTGTC AACAGCAATG GATCACTGAA AATGGTTCAA 6400
TGATCACATT AAGTGGTATT CAATATTTTC ATGAAATGGG AATTGACGTT CCTTCCAAAC ATTCACGTAA AATCTGTTGT GCGTGTTTAG ATTGGAGTGA 6500
ACGCCGTTTC CATTTAGGTG GGTACGTTGG AGCCGCATTA TTTTCGCTTT ATGAATCTAA AGGGTGGTTA ACTCGACATC TTGGTTACCG TGAAGTTACC 6600
ATCACGGAAA AAGGTTATGC TGCTTTTAAG ACCCACTTTC ACATTTAAGT TGTTTTTCTA ATCCGCATAT GATCAATTCA AGGCCGAATA AGAAGGCTGG 6700
CTCTGCACCT TGGTGATCAA ATAATTCGAT AGCTTGTCGT AATAATGGCG GCATACTATC AGTAGTAGGT GTTTCCCTTT CTTCTTTAGC GACTTGATGC 6800
TCTTGATCTT CCAATACGCA ACCTAAAGTA AAATGCCCCA CAGCGCTGAG TGCATATAAT GCATTCTCTA GTGAAAAACC TTGTTGGCAT AAAAAGGCTA 6900
ATTGATTTTC GAGAGTTTCA TACTGTTTTT CTGTAGGCCG TGTACCTAAA TGTACTTTTG CTCCATCGCG ATGACTTAGT AAAGCACATC TAAAACTTTT 7000
AGCGTTATTA CGTAAAAAAT CTTGCCAGCT TTCCCCTTCT AAAGGGCAAA AGTGAGTATG GTGCCTATCT AACATCTCAA TGGCTAAGGC GTCGAGCAAA 7100
GCCCGCTTAT TTTTTACATG CCAATACAAT GTAGGCTGCT CTACACCTAG CTTCTGGGCG AGTTTACGGG TTGTTAAACC TTCGATTCCG ACCTCATTAA 7200
GCAGCTCTAA TGCGCTGTTA ATCACTTTAC TTTTATCTAA TCTAGACATC ATTAATTCCT AATTTTTGTT GACACTCTAT CATTGATAGA GTTATTTTAC 7300
CACTCCCTAT CAGTGATAGA GAAAAGTGAA ATGAATAGTT CGACAAAGAT CGCATTGGTA ATTACGTTAC TCGATGCCAT GGGGATTGGC CTTATCATGC 7400
CAGTCTTGCC AACGTTATTA CGTGAATTTA TTGCTTCGGA AGATATCGCT AACCACTTTG GCGTATTGCT TGCACTTTAT GCGTTAATGC AGGTTATCTT 7500
TGCTCCTTGG CTTGGAAAAA TGTCTGACCG ATTTGGTCGG CGCCCAGTGC TGTTGTTGTC ATTAATAGGC GCATCGCTGG ATTACTTATT GCTGGCTTTT 7600
TCAAGTGCGC TTTGGATGCT GTATTTAGGC CGTTTGCTTT CAGGGATCAC AGGAGCTACT GGGGCTGTCG CGGCATCGGT CATTGCCGAT ACCACCTCAG 7700
CTTCTCAACG CGTGAAGTGG TTCGGTTGGT TAGGGGCAAG TTTTGGGCTT GGTTTAATAG CGGGGCCTAT TATTGGTGGT TTTGCAGGAG AGATTTCACC 7800
GCATAGTCCC TTTTTTATCG CTGCGTTGCT AAATATTGTC ACTTTCCTTG TGGTTATGTT TTGGTTCCGT GAAACCAAAA ATACACGTGA TAATACAGAT 7900
ACCGAAGTAG GGGTTGAGAC GCAATCGAAT TCGGTATACA TCACTTTATT TAAAACGATG CCCATTTTGT TGATTATTTA TTTTTCAGCG CAATTGATAG 8000
GCCAAATTCC CGCAACGGTG TGGGTGCTAT TTACCGAAAA TCGTTTTGGA TGGAATAGCA TGATGGTTGG CTTTTCATTA GCGGGTCTTG GTCTTTTACA 8100
CTCAGTATTC CAAGCCTTTG TGGCAGGAAG AATAGCCACT AAATGGGGCG AAAAAACGGC AGTACTGCTC GGATTTATTG CAGATAGTAG TGCATTTGCC 8200
TTTTTAGCGT TTATATCTGA AGGTTGGTTA GTTTTCCCTG TTTTAATTTT ATTGGCTGGT GGTGGGATCG CTTTACCTGC ATTACAGGGA GTGATGTCTA 8300
TCCAAACAAA GAGTCATCAG CAAGGTGCTT TACAGGGATT ATTGGTGAGC CTTACCAATG CAACCGGTGT TATTGGCCCA TTACTGTTTG CTGTTATTTA 8400
TAATCATTCA CTACCAATTT GGGATGGCTG GATTTGGATT ATTGGTTTAG CGTTTTACTG TATTATTATC CTGCTATCGA TGACCTTCAT GTTAACCCCT 8500
CAAGCTCAGG GGAGTAAACA GGAGACAAGT GCTTAGTTAT TTCGTCACCA AATGATGTTA TTCCGCGAAA TATAATGACC CTCTTGATAA CCCAAGAGGG 8600
CATTTTTTAC GATAAAGAAG ATTTAGCTTC AAATAAAACC TATCTATTTT ATTTATCTTT CAAGCTCAAT AAAAAGCCGC GGTAAATAGC AATAAATTGG 8700
CCTTTTTTAT CGGCAAGCTC TTTTAGGTTT TTCGCATGTA TTGCGATATG CATAAACCAG CCATTGAGTA AGTTTTTAAG CACATCATCA TCATAAGCTT 8800
TAAGTTGGTT CTCTTGGATC AATTTGCTGA CAATGGCGTT TACCTTACCA GTAATGTATT CAAGGCTAAT TTTTTCAAGT TCATTCCAAC CAATGATAGG 8900
CATCACTTCT TGGATAGGGA TAAGGTTTTT ATTATTATCA ATAATATAAT CAAGATAATG TTCAAATATA CTTTCTAAGG CAGACCAACC ATTTGTTAAA 9000
TCAGTTTTTG TTGTGATGTA GGCATCAATC ATAATTAATT GCTGCTTATA ACAGGCACTG AGTAATTGTT TTTTATTTTT AAAGTGATGA TAAAAGGCAC 9100
CTTTGGTCAC CAACGCTTTT CCCGAGATCT CATCTATTGA AACAGCTTGA TAGCCTTTTT CAACAAACAA TATTCGTGCT GAGTTAACCA GTGATTGATA 9200
GGTACTCTTA AAATTTTCTT GTTGATGATT TTTATTTTCC ATGATAGATT TAAAATAACA TACCGTCAGT ATGTTTATGG TATCATGATG ATGTGGTCGT 9300
GACAATCTTA AGAACATTTA GGTTATTTTA TGTATATTGA ACAGCATTCT CGCTATCAAA ATAAAGCTAA TAACATCCAA TTAAGATATG ATGATAAGCA 9400
GTTTCATACA ACGGTTATCA AAGATGTTCT ATTATGGATT GAACATAATT TAGATCAGTC TTTACTGCTT GATGATGTGG CGAATAAAGC GGGTTATACC 9500
AAGTGGTATT TTCAGCGGCT GTTCAAAAAA GTAACAGGGG TCACACTGGC TAGCTATATT CGTGCTCGTC GTTTGACGAA AGCGGCTGTT GAGTTGAGGT 9600
TGACGAAAAA AACTATCCTT GAGATCGCAT TAAAATATCA ATTTGATTCC CAACAATCTT TTACACGTCG ATTTAAGTAC ATTTTTAAGG TTACACCAAG 9700
TTATTATCGG CGTAATAAAT TATGGGAATT GGAGGCAATG CACTGAGAGA TCCCCTCATA ATTTCCCCAA AGCGTAACCA TGTGTGAATA AATTTTGAGC 9800
TAGTAGGGTT GCAGCCACGA GTAAGTCTTC CCTTGTTATT GTGTAGCCAG AATGCCGCAA AACTTCCATG CCTAAGCGAA CTGTTGAGAG TACGTTTCGA 9900
TTTCTGACTG TGTTAGCCTG GAAGTGCTTG TCCCAACCTT GTTTCTGAGC ATGAACGCCC GCAAGCCAAC ATGTTAGTTG AAGCATCAGG GCGATTAGCA 10000
GCATGATATC AAAACGCTCT GAGCTGCTCG TTCGGCTATG GCGTAGGCCT AGTCCGTAGG CAGGACTTTT CAAGTCTCGG AAGGTTTCTT CAATCTGCAT 10100
TCGCTTCGAA TAGATATTAA CAAGTTGTTT GGGTGTTCGA ATTTCAACAG GTAAGTTAGT TGCTAGAACC CATGGCTCCT TTGCCGACGC TGAGTAGATT 10200
TTAGGTGACG GGTGGTGACA ATGAGTCCGT GTCGAGCGCT GATTTTTTCG GCCTTTAGAG CGAGATTTAT ACAATAGAAT TTGGCATGAG ATTGGATTGC 10300
TTTTAGTCAG CCTCTTATAG CCTAAAGTCT TTGAGTGACT AGATGACATA TCATGTAAGT TGCTGATAGG TTTCCAGTTT TCCGCTCCTA GGTCTGCATA 10400
TTGTACTTTT CCTCTTACTC GACTTAACCA GTACCAACCC AGCTTCTCAA CGGATTTATA CCATGGCACT TTAAAGCCAG CATCACTGAC AATGAGCGGT 10500
GTGGTGTTAC TCGGTAGAAT GCTCGCAAGG TCGGCTAGAA ATTGGTCATG AGCTTTCTTT GAACATTGCT CTGAAAGCGG GAACGCTTTC TCATAAAGAG 10600
TAACAGAACG ACCGTGTAGT GCGACTGAAG CTCGCAATAC CATAAGTCGT TTTTGCTCAC GAATATCAGA CCAGTCAACA AGTACAATGG GCATCGTATT 10700
GCCCGAACAG ATAAAGCTAG CATGCCAACG GTATACAGCG AGTCGCTCTT TGTGGAGGTG ACGATTACCT AACAATCGGT CGATTCGTTT GATGTTATGT 10800
TTTGTTCTCG CTTTGGTTGG CAGGTTACGG CCAAGTTCGG TAAGAGTGAG AGTTTTACAG TCAAGTAATG CGTGGCAAGC CAACGTTAAG CTGTTGAGTC 10900
GTTTTAAGTG TAATTCGGGG CAGAATTGGT AAAGAGAGTC GTGTAAAATA TCGAGTTCGC ACATCTTGTT GTCTGATTAT TGATTTTTCG CGAAACCATT 11000
TGATCATATG ACAAGATGTG TATCCACCTT AACTTAATGA TTTTTACCAA AATCATTAGG GGATTCATCA GAGCCGAGTG TTGAATGTCT TCGGCGTGGA 11100
TTATAAAAGC CATTTATATA TTCGAAGATT GCAATCTCAA TATCTCGCCT TGTTTGCCAG TGTCTGCGCC AAATCAACTC AGCCTTTAAT GATTTAAAGA 11200
AGCTTTCTAC TGCGGAGTTA TCAAAACAAT TGCCTTTCCC GCTCATGGAC GGCAGCAATT GATGTTTGAG CAGTAGCTTT TGATATTCAT GAGCGCAATA 11300
TTGGCTCCCA CGGTCTGTGT GTTGAATACA ACCCGGTGGT GGTTTGCGTA AAGCCAACGC CATATTCAGT GCCCTTAATG CAAGATCCTG CTTTAATCGA 11400
TCACCTGTTG CCCAGCCAAT CACGCGACGG GAATACAGGT CAAGGATAAC AGCAAGATAG ACCCATCCTT CTCTGGTCCA AACATAAGTG ATATCGCCTG 11500
CCCATTTCTG GTTGGGTGCG CTTGCGCTAA AGTCTTGTTT TAATAGGTTC GGTGCAATGT TGAAGGTATG ATGACTATCC GTTGTCCGTT TGAATTTACG 11600
CGTTCGAACA ACTGTAATGT TATTCTGGCG CATCAAACGT CCAACCCGAC GCTGCCCAAC CTGCAGGCCC AGCGCTTTCA ACTCTTCTGT CATACGCGGC 11700
CTACCATAGC TCCCCAAACA CAACCGATGC TGCTCACGTA TATGCGCTAG AAGTATAAGA TCACGACGCT GGCGCAGTGA TGGAGGACGG CGTTTCCATG 11800
CGCGTAAACC ACGATCTGTT ACGCCCATCA AACGACATAT GCGTGAACGT GAGAGAGAGC CACGGTAATC CGTAATAAAC TGAAATCTCA CAGCTTTTGT 11900
ACTGCGAAAA ATATTGCTGC CTTTTTTAAT ATCTCCCTCT CCTCCCGAAG GATACGGTTC TCTTTGGCTT TGTTGAATAA ATCGAACTTT TGCTGAGTTG 12000
AAGGATCAGA TCACGCATCT TCCCGACAAC GCAGACCGTT CCGTGGCAAA GCAAAAGTTC AAAATCACCA ACTGGCCCAC CTACAATAAA GCCCTCATCA 12100
ACCGTGGCTC CATAACTTTC TGGCTGGATG ATGAAGCTAT TCAGGCCTGG TATGAGTCAG CAACACCTTC TTCACGAGGC AGACCTCAGC GCTATTCTGA 12200
CCTTGCCATC ACGACTGTGC TGGTCATTAA ACGCGTATTC AGGCTGACCC TGCGCGCTGC GCAGGGCTTT ATTGATTCCA TTTTTTCTCT GATGAACGTT 12300
CCGCTACGCT GCCCGGATTA CAGCTGTGTC AGCAGGCGGG CAAAGTCGGT TAATGTCAGT TTCAAAACGC CCACCCGGGG TGAAATCGCA CACCTGGTAA 12400
TTGATTCCAC CGGGCTGAAG GTCTTCGGTG AAGGCGAGTG GAAAGTCAAA AAGCATGGCC AGGAACGCCG CCGTATCTGG CGTAAGCTGC ATCTCGCCGT 12500
TGACAGTAAA ACACATGAAA TCATCTGCGC TGACCTGTCG CTGAACAACG TTACGGACTC AGAGGCCTTC CCCGGGTTAA TCCGGCAAAC CCACCGGAAA 12600
ATCAGGTCAG CCGCCGCCGA TGGCGCTTAC GATACCCGGC TATGTCACGA TGAACTGCGG CGTAAGAAAA TCAGCGCGCT TATCCCTCCC CGAAAAGGTG 12700
CGGGTTACTG GCCCGGTGAA TATGCAGACC GTAACCGTGC AGTGGCTAAT CAGCGAATGA CCGGGAGTAA TGCGCGGTGG AAATGGACAA CAGATTACAA 12800
CCGTCGCTCG ATAGCGGAAA CGGCGATGTA CCGGGTAAAA CAGCTGTTCG GGGGTTCACT GACGCTGCGT GACTACGATG GTCAGGTTGC GGAGGCTATG 12900
GCCCTGGTAC GAGCGCTGAA CAAAATGACG AAAGCAGGTA TGCCTGAAAG CGTGCGTATT GCCTGAAAAC ACAACCCGCT ACGGGGGAGA CTTACCCGAA 13000
ATCTGATTTA TTCAACAAAG CCGTTCTCTT TGCGTAAACG TTCATTCTCA CGCAGAAGAT CAGTGTCTTG GGTAGGAATT TTAGTTTCAT CGGAAATTGA 13100
TGCGATCCAT TTCCCAAGCG TGGAAAGCCC AATACTTAAA TCTGACGCAA CTTGACGGCG TGTTAAGCCA CTAGTGAGTG CTATGCGAAC TGCATCACGC 13200
TTAAATTCAT CACTATGCTT TAATGACATA TATGGTCTCC TTGATAACAA ATAATGCTCT CAAAAAGACC GGAACGAAAC CGAGGCAAGA CCACCATGGT 13300
CTCTGAGCTC GCCTTTGGGA CCGACATATC GGTAGAGAGT GACGCGCTCG ATGCCGAGTT CCTTGCAGAG ATCGGAAACT GAAGTATCGC GCTGGGCCAT 13400
GGCGGCTTGC GCGAGACGCA CCTGAGCTTT GGTGAGCGCG AATTTTCGTC CGCCCTTGCG ACCGCGCGCT CTCGCGGAGG CGAGACCCGC CATGGTGCGC 13500
TCTCGGATCA GATCCCGCTC GAACTCGGCC AAGGTGGCGA AGATTCCGAA CACCATGCGA CCGGACGCAG TCGTGGTGTC GATCTGAGCG CCCTTTCCAG 13600
TCAGAACCCG CAGGCCGATC TTGCGGTCTG ACAGCTCCTT CACCGTGTTG ACCAGATGGG CAAGCGATCG TCCGAGGCGA TCGAGCTTCC AGACCACCAG 13700
CACATCGCCG TCACGCAATG ACTTGAGGCA GGCAGTCAAG CCAGGGCGAT CATCACGACC GCCGGAAGCA AGATCATCAT AGATATTGTC CCGTTCGACA 13800
CCTGCGGCGC GCAAGGCGTC GTGCTGCAGG TCGAGAGACT GCGAGCCATC GGCTTTGGAG ACGCGGGCAT ATCCGATCAG CATGTATCAC AAACGTTGGT 13900
TTGAGGCGGC GCTTCGGCCA CGATTGCATT GACCTCTGGA AATGTATCTC AACCAGCTTC ATAAACAAAG CGTCTTGAAC GCTATCAGAT TTTGAAAAAG 14000
GAACATGTAT GCCGCGTCGC GTCACTCTAA CCGATCGGCA GAAAGACGCG CTGTTGCGCT TGCCGACTTC ACAGACGGAT TTGCTCAAGC ACTATACGCT 14100
GAGTGATGAA GACCTTGGGC ATATCAGGCT GCGTCGGCGC GCTCACAACA GGTTCGGCTT CGCCCTGCAA TTGTGTGTCC TGCGCTATCC CGGCCGGGTG 14200
CTGGCTCCAG GCGAACTGAT CCCTGCAGAG GTCATCGAAT TTATCGGAGC GCAGCTTGGC CTGGGTGCCG ACGATCTCGT AGACTATGCT GCCCGCGAGG 14300
AAACACGGCA CGAGCATCTT GCCGAGTTAC GGGGGCTCTA CGGCTTCCGC ACCTTCTCCG GACGTGGTGC GAGCGAGCTG AAGGAATGGT TGTTCCGAGA 14400
AGCCGAGATG GCGGTGTCGA ACGAGGATAT CGCCCGTCGC TTCGTAGCCG AGTGCCGACG CACCCGCACT GTCCTTCCCG CGACATCCAC GATCGAGCGG 14500
CTTTGTGCCG CGGCTCTCGT CGATGCCGAG CGACGCATCG AGACGAGGAT CGCCAGTCGG CTGCCTATGT CGATCCGAGA ACAGTTGCTG GCATTGCTCG 14600
AGGAGACGGC TGATGATCGG GTGACCCGTT TTGTGTGGCT GCGCCAGTTC GAGCCTGGCT CGAACTCTTC GTCGGCCAAC CGGCTGCTCG ACCGGCTCGA 14700
ATATCTGCAA CGCATCGATC TCCCCGAGGA TCTGCTTGCC GGCGTTCCTG CCCATCGGGT GACTCGTCTG CGCAGGCAGG GTGAACGGTA TTATGCCGAC 14800
GGCATGCGCG ATCTCCCGGA GGACAGGCGG CTTGCGATCT TGGCTGTTTG CGTCTCGGAA TGGCAGGCGA TGTTGGCCGA CGCAGTGGTC GAAACCCACG 14900
ACCGGATCGT CGGCCGTCTC TACCGTGCTT CGGAGCGTAT TTGCCATGCA AAGGTCGCAG ACGAAGCGGG GGTGGTGCGT GACACCCTGA AATCCTTCGC 15000
CGAGATCGGG GGCGCCCTGG TCGATGCACA GGATGATGGC CAGCCGCTGG GCGATGTCAT CGCGAGTGGG TCAGGGTGGG ACGGCTTAAA AACCCTTGTT 15100
GCAATGGCAA CCAGGCTGAC CGCCACCATG GCCGACGATC CGCTCAATCA TGTGCTCGAC GGTTATCACC GCTTCCGCCG ATACGCTCCA CGCATGTTGC 15200
GCCTGCTCGA TCTGCGAGCT GCGCCCGTTG CACTGCCGCT TCTGGAAGCG GTGACGGCCC TTCGTACCGG TTTGAACGAT GCCGCGATGA CCAGCTTCTT 15300
GCGGCCCAGC TCGAAATGGC ATCGCCACCT TCGGGCCCAG AGGGCTGGCG ACGCTCGCCT ATGGGAGATC GCGGTGCTGT TCCATCTGCG CGATGCGTTC 15400
CGCTCCGGAG ATGTCTGGCT TACTAGGTCC CGGCGCTATG GCGATCTGAA ACACGCACTC GTTCCGGCAC AATCCATCGC GGAAGGCGGT CGTCTCGCTG 15500
TGCCATTGCG GCCGGAGGAA TGGCTGGCAG ACCGGCAAGC TCGCCTCGAC ATGCGGTTGC GCGAGCTTGG CCGTGCCGCT CGCGCAGGCA CGATCCCGGG 15600
CGGGTCGATT GAAAACGGCG TTCTGCATAT CGAGAAACTC GAAGCCGCCG CGCCGACAGG CGCCGAAGAT CTGGTGCTCG ATCTCTACAA GCAGATCCCG 15700
CCCACGCGCA TCACCGATCT CCTGCTGGAG GTGGATGCGG CGACCGGCTT CACCGAAGCG TTCACCCATC TGCGCACAGG AGCACCCTGC GCTGACCGGA 15800
TCGGGCTAAT GAACGTTATC TTGGCGGAAG GGATCAACCT CGGCTTGCGC AAAATGGCGG ATGCGACAAA CACCCACACC TTCTGGGAAT TGATCCGCAT 15900
TGGACGGTGG CATGTCGAGG GCGAAGCCTA TGACCGGGCG CTGGCCATGG TGGTCGAGGC ACAGGCAGCG TTACCCATGG CCCGGTTCTG GGGCATGGGC 16000
ACGTCGGCTT CGAGCGACGG ACGGTTCTTC GTCGCTACAG AGCAAGGTGA GGCCATGAAC CTGGTCAACG CGAAATATGG CAATACCCCG GGCCTGAAAG 16100
CCTATAGCCA CGTCTCCGAC CAATATGCGC CGTTCGCAAC CCAGGTGATT CCTGCAACGG CAAGCGAAGC GCCTTACATC CTCGATGGCC TGCTGATGAA 16200
CGATGCTGGA CGCCATATCC GCGAGCAGTT CACCGACACG GGCGGCTTCA CCGATCACGT CTTTGCCGCA TGTGCCATTC TCGGCTACCG GTTCGCTCCG 16300
CGCATCCGCG ACCTGCCATC CAAACGGCTC TACGCGTTCA ATCCGTCGGC CGCCCCGGCG CACCTGCGAG CGTTGATCGG CGGAAAGGTC AACCAAGCCA 16400
TGATCGAGCG CAATTGGCCC GACATCCTGC GCATCGCCGC CACCATTGCT GCCGGGACCG TCGCGCCAAG CCAGATTCTG CGGAAACTCG CCTCCTATCC 16500
GCGGCAGAAC GAGCTCGCGA CAGCCCTGCG GGAAGTCGGT CGCGTCGAGC GCACCCTGTT CATGATCGAC TGGATTCTGG ATGCCGAACT CCAACGGCGT 16600
GCCCAGATCG GGCTCAACAA AGGCGAAGCT CATCATGCGC TGAAGCGGGC AATCAGCTTC CACCGCCGCG GTGAAATCCG CGACCGTTCC GCCGAAGGCC 16700
AGCATTACCG CATCGCCGGC ATGAATCTGC TCGCCGCCAT CATCATCTTC TGGAACACCA TGAAGCTCGG CGAGGTCGTT GCAAACCAGA AACGCGATGG 16800
AAAGCTGCTA TCGCCCGATC TCTTGGCCCA TGTTTCGCCG CTCGGATGGG AACACATCAA TCTCACCGGA GAATATCGCT GGCCAAAGCC TTAGCGTAGG 16900
ATTCCGCCCC CTCCCGCAAA CGACCCC
|
|
|
|
| Recombination Sites |
|
|
| Name |
Coordinates |
Gene |
Sequence |
| res |
13787-14008 |
222 |
TGTCCCGTTC GACACCTGCG GCGCGCAAGG CGTCGTGCTG CAGGTCGAGA GACTGCGAGC
CATCGGCTTT GGAGACGCGG GCATATCCGA TCAGCATGTA TCACAAACGT TGGTTTGAGG
CGGCGCTTCG GCCACGATTG CATTGACCTC TGGAAATGTA TCTCAACCAG CTTCATAAAC
AAAGCGTCTT GAACGCTATC AGATTTTGAA AAAGGAACAT GT |
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| APH(6)-Id (ARO:3002660) |
Tn5393.11 |
107-952 |
Passenger Gene |
Antibiotic Resistance |
- |
| APH(3'')-Ib (ARO:3002639) |
Tn5393.11 |
943-1746 |
Passenger Gene |
Antibiotic Resistance |
- |
| tnp |
IS10L |
2032-3240 |
Transposase |
|
+ |
| jemA |
Tn10 |
3606-4811 |
Passenger Gene |
Other |
- |
| jemB |
Tn10 |
5255-5575 |
Passenger Gene |
Other |
+ |
| CPT07_26605 |
Tn10 |
5568-5954 |
Passenger Gene |
Hypothetical |
+ |
| jemC |
Tn10 |
5962-6648 |
Passenger Gene |
Other |
+ |
| tetR (ARO:3003479) |
Tn10 |
6626-7252 |
Passenger Gene |
Antibiotic Resistance |
- |
| tet(B) (ARO:3000166) |
Tn10 |
7331-8536 |
Passenger Gene |
Antibiotic Resistance |
+ |
| tetC |
Tn10 |
8649-9242 |
Passenger Gene |
Antibiotic Resistance |
- |
| tetD |
Tn10 |
9330-9746 |
Passenger Gene |
Antibiotic Resistance |
+ |
| tnp |
IS10R |
9756-10964 |
Transposase |
|
- |
| orfB_p |
IS1133_Tn10_IS903B |
11072-11828 |
Transposase |
|
- |
| tnp |
IS903B |
12043-12966 |
Transposase |
|
+ |
| orfA_p |
IS1133_Tn10_IS903B |
13023-13229 |
Accessory Gene |
Regulator |
- |
| tnpR_p |
Tn5393.11 |
13294-13883 |
Accessory Gene |
Resolvase |
- |
| tnpA |
Tn5393.11 |
14009-16894 |
Transposase |
|
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| APH(6)-Id (ARO:3002660) |
APH(6)-Id |
Tn5393.11 |
846 |
107-952 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | APH(6) (ARO:3000151) |
| Comment: | strB, orfI || strict match to reference sequence for ARO:3002660 (bitscore: 568) |
Protein Sequence:
|
MGLMFMPPVF PAHWHVSQPV LIADTFSSLV WKVSLPDGTP AIVKGLKPIE DIADELRGAD YLVWRNGRGA VRLLGRENNL MLLEYAGERM LSHIVAEHGD
YQATEIAAEL MAKLYAASEE PLPSALLPIR DRFAALFQRA RDDQNAGCQT DYVHAAIIAD QMMSNASELR GLHGDLHHEN IMFSSRGWLV IDPVGLVGEV
GFGAANMFYD PADRDDLCLD PRRIAQMADA FSRALDVDPR RLLDQAYAYG CLSAAWNADG EEEQRDLAIA AAIKQVRQTS Y
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| APH(3'')-Ib (ARO:3002639) |
APH(3'')-Ib |
Tn5393.11 |
804 |
943-1746 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | APH(3'') (ARO:3000127) |
| Comment: | strA, orfH || perfect match to reference sequence for ARO: 3002639 |
Protein Sequence:
|
MNRTNIFFGE SHSDWLPVRG GESGDFVFRR GDGHAFAKIA PASRRGELAG ERDRLIWLKG RGVACPEVIN WQEEQEGACL VITAIPGVPA ADLSGADLLK
AWPSMGQQLG AVHSLSVDQC PFERRLSRMF GRAVDVVSRN AVNPDFLPDE DKSTPQLDLL ARVERELPVR LDQERTDMVV CHGDPCMPNF MVDPKTLQCT
GLIDLGRLGT ADRYADLALM IANAEENWAA PDEAERAFAV LFNVLGIEAP DRERLAFYLR LDPLTWG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS10L |
1209 |
2032-3240 |
+ |
| Class: | Transposase |
| Function: | transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MCELDILHDS LYQFCPELHL KRLNSLTLAC HALLDCKTLT LTELGRNLPT KARTKHNIKR IDRLLGNRHL HKERLAVYRW HASFICSGNT MPIVLVDWSD
IREQKRLMVL RASVALHGRS VTLYEKAFPL SEQCSKKAHD QFLADLASIL PSNTTPLIVS DAGFKVPWYK SVEKLGWYWL SRVRGKVQYA DLGAENWKPI
SNLHDMSSSH SKTLGYKRLT KSNPISCQIL LYKSRSKGRK NQRSTRTHCH HPSPKIYSAS AKEPWILATN LPVEIRTPKQ LVNIYSKRMQ IEETFRDLKS
PAYGLGLRHS RTSSSERFDI MLLIALMLQL TCWLAGVHAQ KQGWDKHFQA NTVRNRNVLS TVRLGMEVLR HSGYTITRED SLVAATLLTQ NLFTHGYVLG
KL
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| jemA |
JemA |
Tn10 |
1206 |
3606-4811 |
- |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Function: | glutamate:sodium symporter activity (GO:0015501) |
| Comment: | sodium-dependent glutamate permease |
Protein Sequence:
|
MILDASYTLL VACIALLIGM FVVKFTPFLQ KNHIPEAVVG GFIVAIVLLI IDKTSGYSFT FDASLQSLLM LTFFSSIGLS SDFSRLIKGG KPLVLLTIAV
TILIAIQNTV GMSMAVMMNE SPFIGLIAGS ITLTGGHGNA GAWGPILADK YGVTGAVELA MACATLGLVL GGLVGGPVAR HLLKKVSIPK TTEQERDTIV
EAFEQPSVKR KINANNVIET ISMLIICIVV GGYISALFKD TFLQLPTFVW CLFVGIIIRN TLTHVFKHEV FEPTVDVLGS VALSLFLAMA LMSLKFGQLA
SMAGPVLIII AVQTVVMVLF ACFVTFKMMG KDYDAVVISA GHCGFGMGAT PTAIANMQTV TKAFGPSHKA FLVVPMVGAF IVDISNSILI KIFIEIGTYF
T
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| jemB |
JemB |
Tn10 |
321 |
5255-5575 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Sequence Family: | Antibiotic biosynthesis monooxygenase (Pfam:PF03992) |
Protein Sequence:
|
MIAVIFEVQI QPDQQTRYLT LAEELRPLLS HVAGFISIER FQSLATEGKM LSLSWWENEY AVLQWKNHVL HAKAQQEGRE SIFDFYKISI AHITREYSFK
KDKDNV
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| CPT07_26605 |
CPT07_26605 |
Tn10 |
387 |
5568-5954 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Hypothetical |
| Comment: | Amino acid-binding protein |
Protein Sequence:
|
MFDVHVVLDN QIGQLALLGK TLGNKGIGLE GGGIFTVGDE CHAHFLVEQG KEAKIALEQA GLLVLAIRTP LIRKLKQEKP GELGEIARVL AENNINILVQ
YSDHANQLIL ITDNDSMAAS VTLPWAIK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| jemC |
JemC |
Tn10 |
687 |
5962-6648 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Sequence Family: | HTH ArsR-type DNA-binding domain (InterPro:IPR001845) |
| Comment: | N-terminal 100 amino acids similar to bacterial transcriptional repressors and metal-binding proteins (PMID:10781570) |
Protein Sequence:
|
MANLIRKEVT FESSIAAIGA AMSDISRVKI LSALMDGRAW TATELSSVAN ISASTASSHL SKLLDCQLIT VVAQGKHRYF RLAGKDIAEL MESMMGISLN
HGVHAKVSTP VHLRKARTCY DHLAGEVAVK IYDSLCQQQW ITENGSMITL SGIQYFHEMG IDVPSKHSRK ICCACLDWSE RRFHLGGYVG AALFSLYESK
GWLTRHLGYR EVTITEKGYA AFKTHFHI
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tetR (ARO:3003479) |
TetR |
Tn10 |
627 |
6626-7252 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001); antibiotic efflux (ARO:0010000) |
| Transpoase Chemistry: | repressor of the tetracycline resistance element |
| Target: | tetracycline antibiotic (ARO:3000050) |
| Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
| Comment: | perfect match to reference sequence for ARO:3003479 |
Protein Sequence:
|
MMSRLDKSKV INSALELLNE VGIEGLTTRK LAQKLGVEQP TLYWHVKNKR ALLDALAIEM LDRHHTHFCP LEGESWQDFL RNNAKSFRCA LLSHRDGAKV
HLGTRPTEKQ YETLENQLAF LCQQGFSLEN ALYALSAVGH FTLGCVLEDQ EHQVAKEERE TPTTDSMPPL LRQAIELFDH QGAEPAFLFG LELIICGLEK
QLKCESGS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tet(B) (ARO:3000166) |
Tet(B) |
Tn10 |
1206 |
7331-8536 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic efflux (ARO:0010000) |
| Transpoase Chemistry: | antibiotic efflux (ARO:0010000) |
| Target: | tetracycline antibiotic (ARO:3000050) |
| Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
| Comment: | strict match to reference sequence for ARO:3000166 (bitscore:786)||Synonym: tetB |
Protein Sequence:
|
MNSSTKIALV ITLLDAMGIG LIMPVLPTLL REFIASEDIA NHFGVLLALY ALMQVIFAPW LGKMSDRFGR RPVLLLSLIG ASLDYLLLAF SSALWMLYLG
RLLSGITGAT GAVAASVIAD TTSASQRVKW FGWLGASFGL GLIAGPIIGG FAGEISPHSP FFIAALLNIV TFLVVMFWFR ETKNTRDNTD TEVGVETQSN
SVYITLFKTM PILLIIYFSA QLIGQIPATV WVLFTENRFG WNSMMVGFSL AGLGLLHSVF QAFVAGRIAT KWGEKTAVLL GFIADSSAFA FLAFISEGWL
VFPVLILLAG GGIALPALQG VMSIQTKSHQ QGALQGLLVS LTNATGVIGP LLFAVIYNHS LPIWDGWIWI IGLAFYCIII LLSMTFMLTP QAQGSKQETS
A
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tetC |
TetC |
Tn10 |
594 |
8649-9242 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | DNA binding (GO:0003677) |
| Target: | tetracycline antibiotic (ARO:3000050) |
| Sequence Family: | Bacterial regulatory proteins, tetR family (Pfam:PF00440) |
| Comment: | no match in CARD |
Protein Sequence:
|
MENKNHQQEN FKSTYQSLVN SARILFVEKG YQAVSIDEIS GKALVTKGAF YHHFKNKKQL LSACYKQQLI MIDAYITTKT DLTNGWSALE SIFEHYLDYI
IDNNKNLIPI QEVMPIIGWN ELEKISLEYI TGKVNAIVSK LIQENQLKAY DDDVLKNLLN GWFMHIAIHA KNLKELADKK GQFIAIYRGF LLSLKDK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tetD |
TetD |
Tn10 |
417 |
9330-9746 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | DNA-binding transcription factor activity (GO:0003700) |
| Target: | tetracycline antibiotic |
| Sequence Family: | DNA binding HTH domain, AraC-type (InterPro:IPR018060) |
| Comment: | no match in CARD |
Protein Sequence:
|
MYIEQHSRYQ NKANNIQLRY DDKQFHTTVI KDVLLWIEHN LDQSLLLDDV ANKAGYTKWY FQRLFKKVTG VTLASYIRAR RLTKAAVELR LTKKTILEIA
LKYQFDSQQS FTRRFKYIFK VTPSYYRRNK LWELEAMH
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS10R |
1209 |
9756-10964 |
- |
| Class: | Transposase |
| Function: | transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MCELDILHDS LYQFCPELHL KRLNSLTLAC HALLDCKTLT LTELGRNLPT KARTKHNIKR IDRLLGNRHL HKERLAVYRW HASFICSGNT MPIVLVDWSD
IREQKRLMVL RASVALHGRS VTLYEKAFPL SEQCSKKAHD QFLADLASIL PSNTTPLIVS DAGFKVPWYK SVEKLGWYWL SRVRGKVQYA DLGAENWKPI
SNLHDMSSSH SKTLGYKRLT KSNPISCQIL LYKSRSKGRK NQRSTRTHCH HPSPKIYSAS AKEPWVLATN LPVEIRTPKQ LVNIYSKRMQ IEETFRDLKS
PAYGLGLRHS RTSSSERFDI MLLIALMLQL TCWLAGVHAQ KQGWDKHFQA NTVRNRNVLS TVRLGMEVLR HSGYTITRED LLVAATLLAQ NLFTHGYALG
KL
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| orfB_p |
OrfB_p |
IS1133_Tn10_IS903B |
757 |
11072-11828 |
- |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
| Comment: | Intact orfB, together with orfA, encodes a fusion protein formed by translational frame-shifting that is the transposase for IS1133 |
Protein Sequence:
|
MGVTDRGLRA WKRRPPSLRQ RRDLILLAHI REQHRLCLGS YGRPRMTEEL KALGLQVGQR RVGRLMRQNN ITVVRTRKFK RTTDSHHTFN IAPNLLKQDF
SASAPNQKWA GDITYVWTRE GWVYLAVILD LYSRRVIGWA TGDRLKQDLA LRALNMALAL RKPPPGCIQH TDRGSQYCAH EYQKLLLKHQ LLPSMSGKGN
CFDNSAVESF FKSLKAELIW RRHWQTRRDI EIAIFEYING FYNPRRRHST LG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS903B |
924 |
12043-12966 |
+ |
| Class: | Transposase |
| Function: | transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
VAKQKFKITN WPTYNKALIN RGSITFWLDD EAIQAWYESA TPSSRGRPQR YSDLAITTVL VIKRVFRLTL RAAQGFIDSI FSLMNVPLRC PDYSCVSRRA
KSVNVSFKTP TRGEIAHLVI DSTGLKVFGE GEWKVKKHGQ ERRRIWRKLH LAVDSKTHEI ICADLSLNNV TDSEAFPGLI RQTHRKIRSA AADGAYDTRL
CHDELRRKKI SALIPPRKGA GYWPGEYADR NRAVANQRMT GSNARWKWTT DYNRRSIAET AMYRVKQLFG GSLTLRDYDG QVAEAMALVR ALNKMTKAGM
PESVRIA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| orfA_p |
OrfA_p |
IS1133_Tn10_IS903B |
207 |
13023-13229 |
- |
| Class: | Accessory Gene |
| Sub Class: | Regulator |
| Comment: | orfA, together with orfB, encodes a fusion protein formed by translational frame-shifting that is the transposase for IS1133 |
Protein Sequence:
|
MSLKHSDEFK RDAVRIALTS GLTRRQVASD LSIGLSTLGK WIASISDETK IPTQDTDLLR ENERLRKEN
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR_p |
TnpR_p |
Tn5393.11 |
590 |
13294-13883 |
- |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MLIGYARVSK ADGSQSLDLQ HDALRAAGVE RDNIYDDLAS GGRDDRPGLT ACLKSLRDGD VLVVWKLDRL GRSLAHLVNT VKELSDRKIG LRVLTGKGAQ
IDTTTASGRM VFGIFATLAE FERDLIRERT MAGLASARAR GRKGGRKFAL TKAQVRLAQA AMAQRDTSVS DLCKELGIER VTLYRYVGPK GELRDH
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn5393.11 |
2886 |
14009-16894 |
+ |
| Class: | Transposase |
| Function: | transposase activity (GO:0004803) |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MPRRVTLTDR QKDALLRLPT SQTDLLKHYT LSDEDLGHIR LRRRAHNRFG FALQLCVLRY PGRVLAPGEL IPAEVIEFIG AQLGLGADDL VDYAAREETR
HEHLAELRGL YGFRTFSGRG ASELKEWLFR EAEMAVSNED IARRFVAECR RTRTVLPATS TIERLCAAAL VDAERRIETR IASRLPMSIR EQLLALLEET
ADDRVTRFVW LRQFEPGSNS SSANRLLDRL EYLQRIDLPE DLLAGVPAHR VTRLRRQGER YYADGMRDLP EDRRLAILAV CVSEWQAMLA DAVVETHDRI
VGRLYRASER ICHAKVADEA GVVRDTLKSF AEIGGALVDA QDDGQPLGDV IASGSGWDGL KTLVAMATRL TATMADDPLN HVLDGYHRFR RYAPRMLRLL
DLRAAPVALP LLEAVTALRT GLNDAAMTSF LRPSSKWHRH LRAQRAGDAR LWEIAVLFHL RDAFRSGDVW LTRSRRYGDL KHALVPAQSI AEGGRLAVPL
RPEEWLADRQ ARLDMRLREL GRAARAGTIP GGSIENGVLH IEKLEAAAPT GAEDLVLDLY KQIPPTRITD LLLEVDAATG FTEAFTHLRT GAPCADRIGL
MNVILAEGIN LGLRKMADAT NTHTFWELIR IGRWHVEGEA YDRALAMVVE AQAALPMARF WGMGTSASSD GRFFVATEQG EAMNLVNAKY GNTPGLKAYS
HVSDQYAPFA TQVIPATASE APYILDGLLM NDAGRHIREQ FTDTGGFTDH VFAACAILGY RFAPRIRDLP SKRLYAFNPS AAPAHLRALI GGKVNQAMIE
RNWPDILRIA ATIAAGTVAP SQILRKLASY PRQNELATAL REVGRVERTL FMIDWILDAE LQRRAQIGLN KGEAHHALKR AISFHRRGEI RDRSAEGQHY
RIAGMNLLAA IIIFWNTMKL GEVVANQKRD GKLLSPDLLA HVSPLGWEHI NLTGEYRWPK P
|
|
| Internal Transposable Elements (TE) |
|
|
| TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
| IS1133 interrupted-CP000602.1 |
IS1133 interrupted |
Insertion Sequence |
1840, 11072-1924, 11072 |
85 |
| Tn10-AF162223 |
Tn10 |
Transposon |
1925-11071 |
9147 |
| IS10L-AF162223 |
IS10L |
Insertion Sequence |
1925-3253 |
1329 |
| IS10R-AF162223 |
IS10R |
Insertion Sequence |
9743-11071 |
1329 |
| IS903B-CP000602.1 |
IS903B |
Insertion Sequence |
sequence:IS903B"-null |
1 |
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| IRL |
Tn5393.11 |
1-40 |
GGGGTCGTTT GCGGGAGAGG GCGAAATCCT ACGCTAAGGC |
| IRL |
IS10L |
1925-1941 |
CTGATGAATC CCCTAAT |
| IRR |
IS10L |
3232-3253 |
TTTAATACTC CCCTAGAGAG TC |
| IRR |
IS10R |
9743-9764 |
CTGAGAGATC CCCTCATAAT TT |
| IRL |
IS10R |
11055-11071 |
TAATCCCCTA AGTAGTC |
| IRL |
IS903B |
11966-11983 |
GGCTTTGTTG AATAAATC |
| IRR |
IS903B |
13005-13022 |
CTAAATAAGT TGTTTCGG |
| IRL |
IS1133 |
13267-13293 |
CTGGCCTTGC TTTGGCTCCG TTCTGGT |
| IRRI |
Tn5393.11 |
16847-16927 |
ACCCTTGTGT AGTTAGAGTG GCCTCTTATA GCGACCGGTT TCGGAATCGC
ATCCTAAGGC GGGGGAGGGC GTTTGCTGGG G |
|
| References |
|
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Welch TJ, Fricke WF, McDermott PF, White DG, Rosso ML, Rasko DA, Mammel MK, Eppinger M, Rosovitz MJ, Wagner D, Rahalison L, Leclerc JE, Hinshaw JM, Lindler LE, Cebula TA, Carniel E, Ravel J. Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS One. 2007 Mar 21;2(3):e309. doi: 10.1371/journal.pone.0000309. PubMed ID: 17375195
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