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| Name: Tn5393.1 |
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| Family: Tn3 Group: Tn163 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Pseudomonas aeruginosa strain PA34 Pseudomonas aeruginosa | Molecular Source: | plasmid PA34 |
| Place of Origin: | India | Date of Isolation: | 2017 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 81 bp) |  | GGGGTCGTTTGCGGGAAGGGGCGGAATCCTACGCTAAGGCTTTGGCCAGCGATATTCTCCGGTGAGATTGATGTGTTCCCA |
| IRR (Length: 40 bp) | | GGGGTCGTTTGCGGGAGGGGGCGGAATCCTACGCTAAGGC |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTCGTTT GCGGGAAGGG GCGGAATCCT ACGCTAAGGC TTTGGCCAGC GATATTCTCC GGTGAGATTG ATGTGTTCCC AGGGGATAGG AGAAGTCGCT 100
TGATATCTAG TATGACGTCT GTCGCACCTG CTTGATCGCG GCCGCGATAG CTAGATCGCG TTGCTCCTCT TCTCCATCCG CGTTCCAAGC TGCGGAAAGG 200
CACCCATAAG CGTACGCCTG GTCGAGCAGG CGACGCGGAT CGACGTCCAG CGCACGAGAG AATGCGTCCG CCATCTGTGC AATGCGTCTA GGATCGAGAC 300
AAAGGTCGTC TCTGTCAGCC GGATCGTAGA ACATATTGGC GGCGCCAAAG CCCACTTCAC CGACCAGACC GACGGGATCT ATCACCAGCC AGCCGCGACT 400
GGAGAACATG ATGTTTTCAT GATGCAGATC GCCATGTAGC CCACGCAGTT CCGAGGCATT GCTCATCATT TGATCGGCTA TAATCGCCGC GTGGACGTAG 500
TCAGTTTGAC AACCTGCGTT TTGATCATCG CGCGCCCGCT GAAACAAAGC TGCAAAGCGA TCCCGGATCG GGAGAAGGGC AGAAGGCAGG GGTTCCTCAG 600
ATGCGGCATA CAGCTTCGCC ATTAGTTCCG CTGCAATTTC GGTCGCCTGG TAGTCGCCGT GCTCGGCAAC GATGTGAGAG AGCATTCGCT CCCCGGCATA 700
TTCGAGCAAC ATCAGATTGT TCTCACGACC GAGCAACCGG ACTGCTCCCC TCCCATTGCG CCATACCAGA TAGTCGGCCC CGCGCAGTTC ATCAGCAATG 800
TCTTCTATAG GTTTCAATCC CTTGACGATT GCAGGAGTCC CGTCTGGCAA TGAAACTTTC CAAACGAGGC TGGAAAAGGT GTCCGCAATG AGAACAGGTT 900
GCGAAACGTG CCAATGAGCA GGAAAAACAG GCGGCATGAA CATCAACCCC AAGTCAGAGG GTCCAATCGC AGATAGAAGG CAAGGCGTTC GCGGTCGGGG 1000
GCTTCGATCC CCAATACATT GAATAGGACA GCGAAGGCGC GCTCTGCTTC ATCTGGCGCT GCCCAGTTCT CTTCGGCGTT AGCAATCATG AGTGCCAAAT 1100
CGGCATAGCG ATCTGCTGTT CCGAGCCGCC CAAGGTCGAT CAGACCCGTG CATTGAAGAG TTTTAGGGTC CACCATGAAG TTCGGCATGC AGGGATCACC 1200
ATGGCAAACA ACCATATCGG TGCGCTCTTG GTCGAGCCGC ACCGGTAGCT CTCGTTCGAC ACGAGCCAAA AGATCGAGCT GCGGCGTACT CTTGTCCTCG 1300
TCCGGTAAGA AGTCGGGATT GACGGCATTG CGGGACACCA CATCAACGGC GCGTCCGAAC ATTCGCGACA GCCTGCGCTC AAACGGACAT TGATCAACCG 1400
ATAGGCTGTG AACAGCGCCA AGTTGCTGCC CCATTGACGG CCACGCTTTG AGCAAATCCG CTCCAGACAG ATCAGCCGCC GGTACTCCCG GAATTGCCGT 1500
TATCACCAAG CATGCACCCT CCTGTTCCTC CTGCCAGTTG ATCACCTCGG GGCAAGCCAC ACCTCGACCT TTGAGCCAAA TGAGGCGGTC ACGCTCTCCA 1600
GCGAGCTCAC CGCGGCGGGA AGCAGGTGCG ATTTTCGCGA AGGCATGCCC GTCACCACGT CGAAAAACAA AATCACCAGA TTCTCCGCCT CTGACAGGCA 1700
ACCAGTCAGA ATGCGATTCA CCAAAAAAAA TATTAGTTCG ATTCAATGGA GGTTCCTTCA GTTTTCTGAT GAAGCGCGGA GGTGGCTCAA CTTGGGGTTC 1800
TAAGCCGGAA CCGCCGAAAA TTCCGTCAGC CGATCAACGT GGCTTGTCCC GCGCCCGGTC GATGGGGTGG ACCCAACAGT CGTGTCACTA GCCGCCATTT 1900
CGATCACGGC AATGCCAGCC GGACGTCACG TCCAGATTGT TCCGGTCTGG ACGAGGCCGA CTGACGTCTC GGATGGCGGG TGGCATACAA CTGCTGTGAC 2000
TCCTGCAGGG GGGCAGCTGC CTGACCGGAC GGCGAGCATC AGCCCATCTC ACGTATTCGT CATGTCAGCT TTGACACTGC GCACGCGACG GCATCCGACC 2100
CAAACCTGAC GCTGAGCGTC TCCCAGGAGC CGACGTTACT TCGCATGAAA CGCACCTATC GCCTTCAGCG CGTCTTTGGC TATCTGCGTT CGTAGGGGCA 2200
GGTCATTTGC GTCGCGGGTA GCAAGATTCA GGGCAAACAG CCAAACATCG TCCTGTGCTT CAACATAGCC AACATACCAA CCCACCGAGG GAGTGATGCG 2300
GGTCGCCCAA CCCGTTTTTG CATAAAGGCG ATACTGGGCA TTCTCATCGG CGAACATGAC TTTCTTCAGG GAATCATAGC TGCTCGCTTT GAACGGTAGT 2400
TTTCGCTCAA CAACCCGTCG GAGAAAGGCA ACCTGTTCTT CCGCGCTGAT CGTCAAAGAG CCATCCAGCC AAAACTCCGT TCCATTGAAG GGTTCCAGTA 2500
AATGACCATA GTTTGTCTGT TGAATATAGG CTGGGTACTT GAGTGCCCCC ACTCGAAGGG CAATCTGCTG GTAGCACCAG ACACAACTCA CTTTAAACGC 2600
ACTGTCTAGA GTCTGGTCCT GGTTCCAATT CGCAATCGAA TACTGGGTAC CGTTCCAGTG AAAGATCTGG TTCTCACCTG AAATGGCGCC CTCTTCGAGA 2700
GCAATCAAGG TATTGAGTAC CTTGAACGTG GAAGCTGCCG GGTATCGTTG TTGCGCACGA GGATCGTTGT GAACCAAGCG CTGTCTGGTG GTTAGAGACT 2800
CGATGACGAT GGTCCCATCG ACTCCTGCCC TCTGGAAAAG CTGGGCGATT GCCTGGTTCT CTGCACGCGC TGAGAGTGCG ATAAAGAGAC CAAAGGCCAG 2900
AAGGGTGCTC TTCAGCATAG GGAAATCGGA CTCACGGGGT TGTTATCGGC GCACAATGGT AGTGAATTCA AACGTAAGAA TCAATGGCCG CTTCTGGCCG 3000
CCTGCCGCCG ACCGCGGTCT GGCTCGAAAG CAGTCTGTCA ACGCGCCGTT TCATCGTTGC CATGATCGTT TCTTAATCGC GCACAGGCGG CCACAGGCGG 3100
GCCGTGTGAA CCAGCGTCAG TATCCACACC GTTTCGCCGT CGATCTGGTA CACCAGGCGA TAGCTTTCGT GCGGGATCAA CTCGCGGGTC CCGGGAATCT 3200
TTCCCGGCTT GCCCAGCATG GGGTGCTGGA TCAACCGGGC GGCCGCGTCG CTGAAAATCT CATCCATCCG GGCCGCCGCG CGCGGATTGT CGGCTGCGAT 3300
GTAGTCCCAC ACATCGGCAC GGTCTTGCTG CGCTTCGGGC GTCCAAACAA CCCTCACGCC TGGCTCGCCA CACTGGCACG CCGTGCGGCG AATTCGGCCT 3400
CAACTTCATC GTTCGACCGC CCCAATCCAG CGCGCATCGA AGCCCGGCCG GCTTCGACCT TGCGGCGCAG GAACTCGTCG TACTCGCGCG ACTCGCGCTG 3500
GCGCTGAACG AACTCGCGCA TCAGTTCGCG CAGCACTTGC GACGCCGGGC GATGGGCCGC CTCGGCTTCG GCCATAAACT CGGCGCGCAA CTCAGGCTCC 3600
AGCTTCATCG TGAAAACAGC TTGTTTTGAC ATGATCGGGG CCTCCTTCCA CTTGATACTA ACGAAGTGTA TACGTCGTCA AGACTAAGCG CTACGCACAG 3700
AACGCTGCAA GGCGGGCCTG CGCTATGCCA AGGCCTGTCG GAAAACATTT GTTTTGCGAC AGGCCTTCAA CAGTCCTCTG CACCAACCTC CGAGTGGCCG 3800
CAAAATTGTG CGGAAAACTC TGTCGCCAGA CGCTACCATG CGGAAACCCC TTCTTGATGG TTTTCCGATT ATGTTGGTAG GTTACATGCG CGTGTCGTCG 3900
GATTCCGACC GCCAGAGCAC GAACTTGCAG CGCGATGCGC TGCTCGCCGT CGGCGTCGAT GCGCGGCATC TGTTCGAGGA TCATGCTTCC GGCGCGAAGG 4000
ACGACCGCGC GGGCCTGGCG CGGGCGCTCG AATTCGTTCG CCCTGGCGAC GTGTTGGTCG TGTGGAAGCT CGACCGGCTC GGCCGTTCGT TGTCGCACCT 4100
GCTCGCCATC GTGACCTCGC TCAAGGAAAA GCAGGTGGCG TTCCGCTCGC TGACGGAGAA CCTGGATACC ACGACGCCCT CGGGCGAGTT TCTGTTCCAG 4200
GTGTTCGGCG CGCTCGCGCA GTACGAACGC GCCTTGATCC AGGAACGTGT CGTCGCCGGT CTGGCTGCCG CCCGCAAACG CGGCCGGATC GGCGGCCGGC 4300
CGCAGGCGAT CACCGGCGAG AAGCTGGAGG CCATCGTCGC TGCGCTCGAT GGCGGCATGT CCAAGGCGGC GGTGTGCCGC AACTTCGGCG TCAAGCGAAC 4400
CACGCTGATC GAGACCCTGG CACGGGTTGG TTGGACGGGC TCTCGTGGAG CGTCATCGCG ATGACGACCA AGAGCGAACG ATTGACCGTC CTGTCGGACG 4500
CCGAGCAGGA AGCCCTGTAC GGCCTGCCGG ACTTCGACGA CGCCCAGCGG CTGGAATACT TGGCGTTGAC TGAAACCGAA CTGGCGCTCG CCAGCAGCCG 4600
GCCTGGTCTC CATGCCCAGG TTTATTGCAT CTTGCAGATC GGTTACTTCA AGGCCAAGCA TGCCTTCTTC CGCTTCGACT GGAGTGAGGT CGAGCACGAT 4700
TGCGCCTTCG TGCTGAGCCG CTACTTCCAC GGCGAGTCCT TCGAGCACAA GCCAATCTCC AAGCACGAGC ACTACACCCA GCGCGAGTGG ATTGCCGATC 4800
TGTTCGGCTA CCGGCCGTGG GCGGCCGAGT TCCTGCCGCA GCTCGCGCAG CAGGCCGCGC AGACCGTGCG ACGCGACGTG ATGCCGGGGT TCATCGCCGC 4900
CGAGCTGATC GTCTGGCTAA ACGAGCACAA GATCATCCGG CCCGGCTATA CCACCCTGCA AGAGCTGGTG AGCGAAGCCC TGTCCGCCGA GCGTCGGCGG 5000
CTGGCTGGCC TGCTGTCGGA AGTGTTGGAC GAATCGGCCA AGGCCGCGCT GGGTCGGCTT CTAGTGCGTG ACGACACCCT GTCGCAATTG GCGGCGCTCA 5100
AGCAGGACGC CAAGGACTTT GGCTGGCGTC AGATGGCCCA CGAACGCGAA AAGCGCGCCA CGCTGGAGCC GCTGCACCGG ATCGCCAAGG CGCTGCTGCC 5200
CAAGCTCGGC GTCTCGCAGC AGAATCTGCT GTACTACGCC AGCCTGGCGA ACTTCTACAC CGTCCACGAT CTACGCAACC TGAAGGCCGA TCAGACCTAC 5300
CTCTACCTGC TTTGCTATGC CTGGGTGCGC TACCGGCAGC TTTCCGACAA CCTGGTCGAT GCGATGGCCT ACCACATGAA GCAGTTGGAG GACGAAAGCA 5400
GTGCGGGCGC AAAGCAATCC TTTGTCGCCG AGCAGGTGCG CCGTCAGCAA GACACACCGC AGGTCGGCCG CCTGCTGTCG CTTTACATCG ACGACAGCGT 5500
GCCCGATCCC ACGCCGTTCG GCGATGTGCG CCAGCGCGCC TACAAAATCA TGCCCCGCGA TACGCTGCAA ACCACCGCGC AGCGCATGAG CGTGAAGCCG 5600
GTGAGCAAGC TGGCTTTGCA CTGGCAGGCG GTGGACGGCC TGGCTGAGCG CATCCGCCGC CATCTTCGGC CGCTGTATGT CGCGCTCGAC CTCGCTGGCA 5700
CTGATCCGGG CAGCCCGTGG CTCGTGGCGC TGGCCTGGGC CAAGGACGTG TTCGCCAAAC AGCAGCGCCT ATCGCAACGG CCGCTCGCCG AATGTCCAGC 5800
GGCCACGCTG CCGAAACGCT TGCGACCGTA CCTGCTGACC TTCGATGCCG ATGGCAAGCC GACGGGCCTG CGTGCCGACC GCTACGAGTT CTGGCTGTAC 5900
CGCCAGGTCA GGAAGCGCTT CCAGTCGGGT GAACTCTACC TCGACGACAG CTTGCAGCAC CGGCATTTTT CCGACGAGCT GGTTTCGCTG GATGAGAAGG 6000
CCGACGTGCT GGCGCAGATC GACATCCCGT TCCTGCGGCA GCCACTCGAT GCCCAGCTCG ATGCGCTCGC GACCGAGCTG CGCTCTCAGT GGCTGGCCTT 6100
CAACCGCGAG CTGAAGCAGG GCAAGCTGAC GCACCTGGAA TACGACAAGG ACACGCAGAA GCTGACATGG CGCAAGCCCA GGGGCGAGAA CCAGAAGGCG 6200
CGCGAGAGGG CGTTCTACGA GCAACTGCCG TTCTGCGACG TGGCCGACGT GTTCCGCTTC GTCAACGGCC AGTGCCAGTT CCTGTCGGCG CTGACGCCTT 6300
TGCAGCCGCG CTATGCGAAG AAGGTCGCCG ACGCCGACAG CCTGATGGCG GTCATCATCG CGCAGGCGAT GAACCACGGC AACCAGGTCA TGGCACGCAC 6400
CAGCGACATC CCGTACCACG TGCTGGAGAG CGCCTACCAA CAGTACCTGC GCCACGCAAC GCTGCACGCG GCCAACGACT GCATCAGCAA CGCCATCGCC 6500
GCGCTGCCGA TCTTCCCGTA CTACTCGTTC GACCTCGATG CACTGTACGG TGCCGTCGAT GGTCAGAAAT TCGGCGTCGC GCGGCCGACC GTGAAAGCGC 6600
GCCACTCGCG CAAATACTTT GGGCGCGGCA AGGGCGTGGT CGCCTACACG CTGCTGTGCA ACCACGTGCC GCTCAACGGC TACCTGATCG GCGCGCACGA 6700
TTACGAGGCC CATCACGTGT TCGACATCTG GTATCGCAAC ACGTCGGACA TCGTGCCGAC CGCGATCACC GGCGACATGC ACAGCGTCAA CAAGGCCAAC 6800
TTCGCTATCT TGCACTGGTT CGGCCTGCGT TTCGAGCCGC GCTTCACCGA CCTTGGCGAT CAGTTGAAGG AACTCTACAG TGCCGACGAT CCGGCGCTGT 6900
ACGATCAGTG CCTGATCCGG CCGGCCGGGA GAATCGACCG CGATCTCATA GTCAGCGAGA AGCCGAACCT CGACCAGATC GTCGCCACGC TCGGACTGAA 7000
GGAGATGACG CAGGGCACGC TGATCCGCAA GCTATGCACC TACACCGCGC CGAACCCGAC GCGGCGCGCG GTGTTCGAGT TCGACAAGCT CATCCGCAGC 7100
ATCTACACGC TGCGCTACCT GCGCGATCCG CAACTGGAGC GCAACGTGCA CCGCTCACAG AACCGCATCG AGTCCTATCA CCAGCTACGC TCGACCATCG 7200
CCCAGGTCGG CGGCAAGAAG GAATTGACCG GGCGCACCGA CATCGAAATT GAGATCAGCA ACCAGTGCGC CAGGCTGATC GCCAACGCGG TCATCTTCTA 7300
CAACTCGGCC ATCCTCTCGC GGCTGCTGAT GAATTACGAG GCGAGCGGCA ACGCCAAGGC GCACGCTCTC CTGACCCAGA TATCGCCGGC GGCCTGGCGG 7400
CACATCCTGC TGAACGGGCA TTACACCTTC CAGAGCGACG GCAAGATGAT CGACCTGGAT GCGCTCGTGG CGGGCCTGGA GCTGGGATGA CGGAAATTTC 7500
GGCGGTTCCG GCTTAGAACC CCAACTTGCG AAAAGAAACG AGTTGCGACG TAAGTCCGAG AACATGCTTT CCATGGTCTC TGAGCTCGCC TTTGGGACCG 7600
ACATATCGGT AGAGAGTGAC GCGCTCGATG CCGAGTTCCT TGCAGAGATC GGAAACTGAA GTATCGCGCT GGGCCATGGC GGCTTGCGCG AGACGCACCT 7700
GAGCTTTGGT GAGCGCGAAT TTTCGTCCGC CCTTGCGACC GCGCGCTCTC GCGGAGGCGA GACCCGCCAT GGTGCGCTCT CGGATCAGAT CCCGCTCGAA 7800
CTCGGCCAAG GTGGCGAAGA TTCCGAACAC CATGCGACCG GACGCAGTCG TGGTGTCGAT CTGAGCGCCC TTTCCAGTCA GAACCCGCAG GCCGATCTTG 7900
CGGTCTGACA GCTCCTTCAC CGTGTTGACC AGATGGGCAA GCGATCGTCC GAGGCGATCG AGCTTCCAGA CCACCAGCAC ATCGCCGTCA CGCAATGACT 8000
TGAGGCAGGC AGTCAAGCCA GGGCGATCAT CACGACCGCC GGAAGCAAGA TCATCATAGA TATTGTCCCG TTCGACACCT GCGGCGCGCA AGGTGTCGTG 8100
CTGCAGGTCG AGAGACTGCG AGCCATCGGC TTTGGAGACG CGGGCATATC CGATCAGCAT GTATCACAAA CGTTGGTTTG AGGCGGCGCT TCGGCCACGA 8200
TTGCATTGAC CTCTGGAAAT GTATCTCAAC CAGCTTCATA AACAAAGCGT CTTGAACGCT ATCAGATTTT GAAAAAGGAA CATGTATGCC GCGTCGCGTC 8300
ACTCTAACCG ATCGGCAGAA AGACGCGCTG TTGCGCTTGC CGACTTCACA GACGGATTTG CTCAAGCACT ATACGCTGAG TGATGAAGAC CTTGGGCATA 8400
TCAGGCTGCG TCGGCGCGCT CACAACAGGT TCGGCTTCGC CCTGCAATTG TGTGTCCTGC GCTATCCCGG CCGGGTGCTG GCTCCAGGCG AACTGATCCC 8500
TGCAGAGGTC ATCGAATTTA TCGGAGCGCA GCTTGGCCTG GGTGCCGACG ATCTCGTAGA CTATGCTGCC CGCGAGGAAA CACGGCACGA GCATCTTGCC 8600
GAGTTACGGG GGCTCTACGG CTTCCGCACC TTCTCCGGAC GTGGTGCGAG CGAGCTGAAG GAATGGTTGT TCCGAGAAGC CGAGATGGCG GTGTCGAACG 8700
AGGATATCGC CCGTCGCTTC GTAGCCGAGT GCCGACGCAC CCGCACTGTC CTTCCCGCGA CATCCACGAT CGAGCGGCTT TGTGCCGCGG CTCTCGTCGA 8800
TGCCGAGCGA CGCATCGAGA CGAGGATCGC CATTCGTCTG CCTATGTCGA TCCGAGAACA GTTGCTGGCA TTGCTCGAGG AGACGGCTGA TGATCGGGTG 8900
ACCCGTTTTG TGTGGCTGCG CCAGTTCGAG CCTGGCTCGA ACTCTTCGTC GGCCAACCGG CTGCTCGACC GGCTCGAATA TCTGCAACGC GTCGATCTCC 9000
CCGAGGATCT GCTTGCCGGC GTTCCTGCCC ATCGGGTGAC TCGTCTGCGC AGGCAGGGTG AACGGTATTA TGCCGACGGC ATGCGCGATC TCCCGGAGGA 9100
CAGGCGGCTT GCGATCTTGG CTGTTTGCGT CTCGGAATGG CAGGCGATGT TGGCCGACGC AGTGGTCGAA ACCCACGACC GGATCGTCGG CCGTCTCTAC 9200
CGTGCTTCGG AGCGTATTTG CCATGCAAAG GTCGCAGACG AAGCGGGGGT GGTGCGTGAC ACCCTGAAAT CCTTCGCCGA GATCGGGGGC GCCCTGGTCG 9300
ATGCACAGGA TGATGGCCAG CCGCTGGGCG ACGTCATCGC GAGCGGATCA GGGTGGGACG GCTTCAAAAC CCTTGTTGCA ATGGCAACCA GGCTCACCGC 9400
CACCATGGCC GACGATCCGC TCAACCATGT GCTCGACGGT TATCACCGCT TCCGCCGATA CGCTCCACGC ATGTTGCGCC TGCTCGATCT GCGAGCTGCG 9500
CCCGTTGCAC TGCCGCTTCT GGAAGCGGTG ACGGCCCTTC GTACCGGTTT GAACGATGCC GCGATGACCA GCTTCTTGCG GCCCAGCTCG AAATGGCATC 9600
GCCACCTTCG GGCCCAGAGG GCTGGCGACG CTCGCCTATG GGAGATCGCG GTGCTGTTCC ATCTGCGCGA TGCGTTCCGC TCCGGAGATG TCTGGCTTAC 9700
TAGGTCCCGG CGCTATGGCG ATCTGAAACA CGCACTCGTT CCGGCACAAG CCATCGCGGA AGGCGGTCGT CTCGCTGTGC CATTGCGGCC GGAGGAATGG 9800
CTGGCAGACC GGCAAGCTCG CCTCGACATG CGGTTGCGCG AGCTTGGCCG TGCCGCTCGC GCAGGCACGA TCCCGGGCGG GTCGATTGAA AACGGCGTTC 9900
TGCATATCGA GAAACTCGAA GCCGCCGCGC CGACAGGCGC CGAAGATCTG GTGCTCGATC TCTACAAGCA GATCCCGCCC ACGCGCATCA CCGATCTCCT 10000
GCTGGAGGTG GATGCGGCGA CCGGCTTCAC CGAAGCGTTC ACCCATCTGC GCACAGGAGC ACCCTGCGCT GACCGGATCG GGCTAATGAA CGTTATCTTG 10100
GCGGAAGGGA TCAACCTCGG CTTGCGCAAA ATGGCGGATG CGACAAACAC CCACACCTTC TGGGAATTGA TCCGCATTGG ACGGTGGCAT GTCGAGGGCG 10200
AAGCCTATGA CCGGGCGCTG GCCATGGTGG TCGAGGCACA GGCAGCGTTA CCCATGGCCC GGTTCTGGGG CATGGGCACG TCGGCTTCGA GCGACGGACA 10300
GTTCTTCGTC GCTACAGAGC AAGGTGAGGC CATGAACCTG GTCAACGCGA AATATGGCAA TACCCCGGGC CTGAAAGCCT ATAGCCACGT CTCCGACCAA 10400
TATGCGCCGT TCGCAACCCA GGTGATTCCT GCAACGGCAA GCGAAGCGCC TTACATCCTC GATGGCCTGC TGATGAACGA TGCTGGACGC CATATCCGCG 10500
AGCAGTTCAC CGACACGGGC GGCTTCACCG ATCACGTCTT TGCCGCATGT GCCATTCTCG GCTACCGGTT CGCTCCGCGC ATCCGCGACC TGCCATCCAA 10600
ACGGCTCTAC GCGTTCAATC CGTCGGCCGC CCCGGCGCAC CTGCGAGCGT TGATCGGCGG AAAGGTCAAC CAAGCCATGA TCGAGCGCAA TTGGCCCGAC 10700
ACCCTGCGCA TCGCCGCCAC CATTGCTGCC GGGACCGTCG CGCCAAGCCA GATTCTGCGG AAACTCGCCT CCTATCCGCG GCAGAACGAG CTCGCGACAG 10800
CCCTGCGGGA AGTCGGTCGC GTCGAGCGCA CCCTGTTCAT GATCGACTGG ATTCTGGATG CCGAACTCCA ACGGCGTGCC CAGATCGGGC TCAACAAAGG 10900
CGAAGCTCAT CATGCGCTGA AGCGGGCAAT CAGCTTCCAC CGCCGCGGTG AAATCCGCGA CCGTTCCGCC GAAGGCCAGC ATTACCGCAT CGCCGGCATG 11000
AATCTGCTCG CCGCCATCAT CATCTTCTGG AACACCATGA AGCTCGGCGA GGTCGTTGCA AACCAGAAAC GCGATGGAAA GCTGCTATCG CCCGATCTCT 11100
TGGCCCATGT TTCGCCGCTC GGATGGGAAC ACATCAATCT CACCGGAGAA TATCGCTGGC CAAAGCCTTA GCGTAGGATT CCGCCCCCTC CCGCAAACGA 11200
CCCC
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| Recombination Sites |
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|
| Name |
Coordinates |
Gene |
Sequence |
| res |
3733-3863 |
131 |
GCCTGTCGGA AAACATTTGT TTTGCGACAG GCCTTCAACA GTCCTCTGCA CCAACCTCCG
AGTGGCCGCA AAATTGTGCG GAAAACTCTG TCGCCAGACG CTACCATGCG GAAACCCCTT
CTTGATGGTT T |
| res_site_I |
3733-3761 |
29 |
GCCTGTCGGA AAACATTTGT TTTGCGACA |
| res_site_II |
3795-3838 |
44 |
TGGCCGCAAA ATTGTGCGGA AAACTCTGTC GCCAGACGCT ACCA |
| res_site_III |
3839-3863 |
25 |
TGCGGAAACC CCTTCTTGAT GGTTT |
| res |
8064-8285 |
222 |
TGTCCCGTTC GACACCTGCG GCGCGCAAGG TGTCGTGCTG CAGGTCGAGA GACTGCGAGC
CATCGGCTTT GGAGACGCGG GCATATCCGA TCAGCATGTA TCACAAACGT TGGTTTGAGG
CGGCGCTTCG GCCACGATTG CATTGACCTC TGGAAATGTA TCTCAACCAG CTTCATAAAC
AAAGCGTCTT GAACGCTATC AGATTTTGAA AAAGGAACAT GT |
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| APH(6)-Id (ARO:3002660) |
Tn5393.1 |
107-952 |
Passenger Gene |
Antibiotic Resistance |
- |
| APH(3'')-Ib (ARO:3002639) |
Tn5393.1 |
943-1746 |
Passenger Gene |
Antibiotic Resistance |
- |
| NPS-1 (ARO:3004239) |
Tn5501.6 |
2136-2918 |
Passenger Gene |
Antibiotic Resistance |
- |
| parE |
Tn5501.6 |
3073-3357 |
Passenger Gene |
Toxin |
- |
| parD |
Tn5501.6 |
3354-3632 |
Passenger Gene |
Antitoxin |
- |
| tnpR |
Tn5501.6 |
3886-4464 |
Accessory Gene |
Resolvase |
+ |
| tnpA |
Tn5501.6 |
4461-7490 |
Transposase |
|
+ |
| tnpR |
Tn5393.1 |
7549-8160 |
Accessory Gene |
Resolvase |
- |
| tnpA |
Tn5393.1 |
8286-11171 |
Transposase |
|
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| APH(6)-Id (ARO:3002660) |
APH(6)-Id |
Tn5393.1 |
846 |
107-952 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | APH(6) (ARO:3000151) |
| Comment: | strB, orfI || strict match to reference sequence for ARO:3002660 (bitscore: 568) |
Protein Sequence:
|
MGLMFMPPVF PAHWHVSQPV LIADTFSSLV WKVSLPDGTP AIVKGLKPIE DIADELRGAD YLVWRNGRGA VRLLGRENNL MLLEYAGERM LSHIVAEHGD
YQATEIAAEL MAKLYAASEE PLPSALLPIR DRFAALFQRA RDDQNAGCQT DYVHAAIIAD QMMSNASELR GLHGDLHHEN IMFSSRGWLV IDPVGLVGEV
GFGAANMFYD PADRDDLCLD PRRIAQMADA FSRALDVDPR RLLDQAYAYG CLSAAWNADG EEEQRDLAIA AAIKQVRQTS Y
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| APH(3'')-Ib (ARO:3002639) |
APH(3'')-Ib |
Tn5393.1 |
804 |
943-1746 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | APH(3'') (ARO:3000127) |
| Comment: | strA, orfH || perfect match to reference sequence for ARO: 3002639 |
Protein Sequence:
|
MNRTNIFFGE SHSDWLPVRG GESGDFVFRR GDGHAFAKIA PASRRGELAG ERDRLIWLKG RGVACPEVIN WQEEQEGACL VITAIPGVPA ADLSGADLLK
AWPSMGQQLG AVHSLSVDQC PFERRLSRMF GRAVDVVSRN AVNPDFLPDE DKSTPQLDLL ARVERELPVR LDQERTDMVV CHGDPCMPNF MVDPKTLQCT
GLIDLGRLGT ADRYADLALM IANAEENWAA PDEAERAFAV LFNVLGIEAP DRERLAFYLR LDPLTWG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| NPS-1 (ARO:3004239) |
NPS-1 |
Tn5501.6 |
783 |
2136-2918 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | cephalosporin (ARO:0000032)||penam (ARO:3000008) |
| Sequence Family: | NPS beta-lactamase (ARO:3004240) |
| Comment: | strict match to reference for ARO:3004240 (bitscore:538)|| |
Protein Sequence:
|
MLKSTLLAFG LFIALSARAE NQAIAQLFQR AGVDGTIVIE SLTTRQRLVH NDPRAQQRYP AASTFKVLNT LIALEEGAIS GENQIFHWNG TQYSIANWNQ
DQTLDSAFKV SCVWCYQQIA LRVGALKYPA YIQQTNYGHL LEPFNGTEFW LDGSLTISAE EQVAFLRRVV ERKLPFKASS YDSLKKVMFA DENAQYRLYA
KTGWATRITP SVGWYVGYVE AQDDVWLFAL NLATRDANDL PLRTQIAKDA LKAIGAFHAK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| parE |
ParE |
Tn5501.6 |
285 |
3073-3357 |
- |
| Class: | Passenger Gene |
| Sub Class: | Toxin |
| Target: | DNA gyrase |
| Sequence Family: | ParE_toxin (Pfam:PF05016) |
Protein Sequence:
|
VRVVWTPEAQ QDRADVWDYI AADNPRAAAR MDEIFSDAAA RLIQHPMLGK PGKIPGTREL IPHESYRLVY QIDGETVWIL TLVHTARLWP PVRD
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| parD |
ParD |
Tn5501.6 |
279 |
3354-3632 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antitoxin |
| Sequence Family: | parD (PDB:4Q2U) |
| Comment: | RelB |
Protein Sequence:
|
MSKQAVFTMK LEPELRAEFM AEAEAAHRPA SQVLRELMRE FVQRQRESRE YDEFLRRKVE AGRASMRAGL GRSNDEVEAE FAARRASVAS QA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
Tn5501.6 |
579 |
3886-4464 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Function: | recombinaseactivity (GO:0000150) |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MRVSSDSDRQ STNLQRDALL AVGVDARHLF EDHASGAKDD RAGLARALEF VRPGDVLVVW KLDRLGRSLS HLLAIVTSLK EKQVAFRSLT ENLDTTTPSG
EFLFQVFGAL AQYERALIQE RVVAGLAAAR KRGRIGGRPQ AITGEKLEAI VAALDGGMSK AAVCRNFGVK RTTLIETLAR VGWTGSRGAS SR
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn5501.6 |
3030 |
4461-7490 |
+ |
| Class: | Transposase |
| Function: | transposase activity (GO:0004803) |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MTTKSERLTV LSDAEQEALY GLPDFDDAQR LEYLALTETE LALASSRPGL HAQVYCILQI GYFKAKHAFF RFDWSEVEHD CAFVLSRYFH GESFEHKPIS
KHEHYTQREW IADLFGYRPW AAEFLPQLAQ QAAQTVRRDV MPGFIAAELI VWLNEHKIIR PGYTTLQELV SEALSAERRR LAGLLSEVLD ESAKAALGRL
LVRDDTLSQL AALKQDAKDF GWRQMAHERE KRATLEPLHR IAKALLPKLG VSQQNLLYYA SLANFYTVHD LRNLKADQTY LYLLCYAWVR YRQLSDNLVD
AMAYHMKQLE DESSAGAKQS FVAEQVRRQQ DTPQVGRLLS LYIDDSVPDP TPFGDVRQRA YKIMPRDTLQ TTAQRMSVKP VSKLALHWQA VDGLAERIRR
HLRPLYVALD LAGTDPGSPW LVALAWAKDV FAKQQRLSQR PLAECPAATL PKRLRPYLLT FDADGKPTGL RADRYEFWLY RQVRKRFQSG ELYLDDSLQH
RHFSDELVSL DEKADVLAQI DIPFLRQPLD AQLDALATEL RSQWLAFNRE LKQGKLTHLE YDKDTQKLTW RKPRGENQKA RERAFYEQLP FCDVADVFRF
VNGQCQFLSA LTPLQPRYAK KVADADSLMA VIIAQAMNHG NQVMARTSDI PYHVLESAYQ QYLRHATLHA ANDCISNAIA ALPIFPYYSF DLDALYGAVD
GQKFGVARPT VKARHSRKYF GRGKGVVAYT LLCNHVPLNG YLIGAHDYEA HHVFDIWYRN TSDIVPTAIT GDMHSVNKAN FAILHWFGLR FEPRFTDLGD
QLKELYSADD PALYDQCLIR PAGRIDRDLI VSEKPNLDQI VATLGLKEMT QGTLIRKLCT YTAPNPTRRA VFEFDKLIRS IYTLRYLRDP QLERNVHRSQ
NRIESYHQLR STIAQVGGKK ELTGRTDIEI EISNQCARLI ANAVIFYNSA ILSRLLMNYE ASGNAKAHAL LTQISPAAWR HILLNGHYTF QSDGKMIDLD
ALVAGLELG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
Tn5393.1 |
612 |
7549-8160 |
- |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Function: | recombinaseactivity (GO:0000150) |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MLIGYARVSK ADGSQSLDLQ HDTLRAAGVE RDNIYDDLAS GGRDDRPGLT ACLKSLRDGD VLVVWKLDRL GRSLAHLVNT VKELSDRKIG LRVLTGKGAQ
IDTTTASGRM VFGIFATLAE FERDLIRERT MAGLASARAR GRKGGRKFAL TKAQVRLAQA AMAQRDTSVS DLCKELGIER VTLYRYVGPK GELRDHGKHV
LGLT
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn5393.1 |
2886 |
8286-11171 |
+ |
| Class: | Transposase |
| Function: | transposase activity (GO:0004803) |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MPRRVTLTDR QKDALLRLPT SQTDLLKHYT LSDEDLGHIR LRRRAHNRFG FALQLCVLRY PGRVLAPGEL IPAEVIEFIG AQLGLGADDL VDYAAREETR
HEHLAELRGL YGFRTFSGRG ASELKEWLFR EAEMAVSNED IARRFVAECR RTRTVLPATS TIERLCAAAL VDAERRIETR IAIRLPMSIR EQLLALLEET
ADDRVTRFVW LRQFEPGSNS SSANRLLDRL EYLQRVDLPE DLLAGVPAHR VTRLRRQGER YYADGMRDLP EDRRLAILAV CVSEWQAMLA DAVVETHDRI
VGRLYRASER ICHAKVADEA GVVRDTLKSF AEIGGALVDA QDDGQPLGDV IASGSGWDGF KTLVAMATRL TATMADDPLN HVLDGYHRFR RYAPRMLRLL
DLRAAPVALP LLEAVTALRT GLNDAAMTSF LRPSSKWHRH LRAQRAGDAR LWEIAVLFHL RDAFRSGDVW LTRSRRYGDL KHALVPAQAI AEGGRLAVPL
RPEEWLADRQ ARLDMRLREL GRAARAGTIP GGSIENGVLH IEKLEAAAPT GAEDLVLDLY KQIPPTRITD LLLEVDAATG FTEAFTHLRT GAPCADRIGL
MNVILAEGIN LGLRKMADAT NTHTFWELIR IGRWHVEGEA YDRALAMVVE AQAALPMARF WGMGTSASSD GQFFVATEQG EAMNLVNAKY GNTPGLKAYS
HVSDQYAPFA TQVIPATASE APYILDGLLM NDAGRHIREQ FTDTGGFTDH VFAACAILGY RFAPRIRDLP SKRLYAFNPS AAPAHLRALI GGKVNQAMIE
RNWPDTLRIA ATIAAGTVAP SQILRKLASY PRQNELATAL REVGRVERTL FMIDWILDAE LQRRAQIGLN KGEAHHALKR AISFHRRGEI RDRSAEGQHY
RIAGMNLLAA IIIFWNTMKL GEVVANQKRD GKLLSPDLLA HVSPLGWEHI NLTGEYRWPK P
|
|
| Internal Transposable Elements (TE) |
|
|
| TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
| Tn5501.6-MF487840.1 |
Tn5501.6 |
Transposon |
1794-7522 |
5729 |
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| IRL |
Tn5393.1 |
1-40 |
GGGGTCGTTT GCGGGAAGGG GCGGAATCCT ACGCTAAGGC |
| IRL |
Tn5501.6 |
1789-1793 |
AACTT |
| IRR |
Tn5501.6 |
1794-1831 |
GGGGTTCTAA GCCGGAACCG CCGAAAATTC CGTCAGCC |
| IRRl |
Tn5393.1 |
7485-7522 |
CCTACTGCCT TTAAAGCCGC CAAGGCCGAA TCTTGGGG |
| IRR |
Tn5393.1 |
7523-7527 |
AACTT |
| null |
|
11124-11204 |
ACCCTTGTGT AGTTAGAGTG GCCTCTTATA GCGACCGGTT TCGGAATCGC
ATCCTAAGGC GGGGGAGGGC GTTTGCTGGG G |
|
| References |
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