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Internal Transposable Elements | |
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Internal Repeats | |
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References | |
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| Name: Tn5090 |
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| Family: Tn402 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Peudomonas aeruginosa | | |
| Place of Origin: | China | Date of Isolation: | 2008 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAGTT GATTGGGCGT AATGGCTGTT GTGCAGCCAG CTCCTGACAG TTCAATATCA GAAGTGATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGAG CATGGCGACG GACACCCCAC GGATTCCAGA ACAAGGCGTG GCCACTCTGC CTGATGAGGC 200
TTGGGAGCGT GCGCGCCGTC GTGCGGAGAT CATCAGTCCG TTGGCGCAGT CGGAGACGGT CGGGCACGAA GCGGCCGATA TGGCGGCTCA GGCGCTGGGC 300
TTGTCTCGGC GCCAGGTATA CGTTCTGATC CGGCGTGCCC GGCAAGGCAG CGGCCTCGTG ACGGATCTGG TGCCCGGCCA GTCCGGTGGA GGTAAAGGTA 400
AGGGGCGCTT GCCGGAACCG GTCGAGCGCG TCATCCACGA GCTACTGCAA AAGCGGTTCC TGACCAAGCA GAAGCGCAGC CTAGCGGCCT TTCACCGCGA 500
AGTCACTCAG GTGTGCAAGG CTCAAAAACT GCGAGTGCCG GCGCGCAATA CCGTGGCCTT ACGGATCGCT AGCCTTGACC CGCGCAAGGT CATCCGCCGG 600
CGGGAAGGCC AGGATGCCGC TCGTGACCTA CAAGGTGTGG GCGGCGAGCC TCCTGCCGTG ACCGCGCCGC TGGAGCANGT GCAGATAGAC CATACGGTCA 700
TCGACCTGAT CGTGGTCGAT GACCGCGACC GGCAACCTAT TGGCCGCCCG TACCTGACCC TCGCCATCGA CTTGTTCACC CGCTGCGTGC TCGGCATGGT 800
CGTCACGCTG GAAGCGCCGT CTGCCGTTTC GGTTGGCCTG TGCCTCGTGC ATGTCGCCTG CGACAAGCGC CCTTGGCTGG AAGGACTGAA CGTGGAAATG 900
GATTGGCAGA TGAGCGGCAA GCCCTTGCTG CTCTACCTAG ACAACGCGGC CGAGTTCAAG AGCGAGGCCC TGCGCCGGGG TTGCGAGCAG CATGGCATCC 1000
GGCTGGACTA TCGCCCGCTG GGACAGCCGC ACTATGGCGG CATCGTGGAA CGGATCATCG GCACGGCGAT GCAGATGATT CACGACGAAC TGCCGGGAAC 1100
GACCTTCTCC AACCCTGACC AGCGCGGCGA CTACGATTCC GAAAACAAGG CCGCCCTGAC GCTGCGCGAG CTAGAGCGCT GGCTCACATT GGCGGTCGGC 1200
ACCTACCACG GTTCGGTGCA CAACGGCCTG CTCCAACCGC CGGCCGCGCG CTGGGCCGAG GCCGTGGCGC GTGTCGGCGT ACCGGCCGTC GTCACACGCG 1300
CTACTTCGTT CCTGGTCGAT TTTCTGCCGA TCCTCCGGCG CACGCTGACC CGCACCGGCT TTGTCATCGA CCACATCCAC TACTACGCCG ATGCGCTCAA 1400
GCCGTGGATT GCGCGGCGTG AACGCTGGCC GTCCTTTCTG ATCCGGCGCG ATCCCCGCGA CATCAGCCGT ATCTGGGTGC TGGAGCCGGA GGGACAGCAC 1500
TACCTGGAAA TCCCGTACCG CACCCTGTCC CATCCGGCCG TCACGCTCTG GGAGCAGCGC CAGGCGCTGG CACGGCTACG GCAGCTCGGG CGCGAGCAGG 1600
TGGATGAATC GGCGCTGTTC CGCATGATCG GCCAGATGCG CGAGATCGTG TCCACCGCGC AGAAGGCCAC GCGCAAGGCG CGGCGTGATG CGGATCGACG 1700
CCAGCACCTC AAGCTGTCGC CTCCACCCGT CAAGCCCACA CCGCCGGACG CGGACAGCGC CGACTCGCAG GTTGGCAACC TGCCGCCAGC CAAACCGTTC 1800
GAGCAGATCG AGGAGTGGTA GCCGTGGACG AGTATCCCTG CATCGACCTA TCTCACCTGC TTCCGGCGGC GCAGGGATTG GCAAGGCTGC CGGCCAGCGA 1900
GCGAATTCAG CGCCTTCGCG CCGACCGCTG GATCGGCTAT CCACGCGCGG TCGAAGCGTT GAACCGGCTG GAGGCCTTGT ATGCCTGGCC GAACAAGCAA 2000
CGCATGCCCA ACCTGCTGCT GATCGGCCCG ACCAACAATG GCAAGTCGAT GATCGTCGAG AAGTTCCGCC GCACCCACCC GGCCAGCTCC GACGCCGACC 2100
AGGAGCACAT CCCGGTGTTG GTCGTGCAGA TGCCGTCCGA GCCGTCCGTG ATCCGCTTCT ACGTCGCGCT GCTCGCCGCG ATGGGCGCGC CGCTGCGCCC 2200
ACGCCCACGG TTGCCGGAAA TGGAGCAACT GGCTCTGGCA CTGCTGCGCA AGGTCGGCGT GCGCATGCTG GTGATCGACG AGCTGCACAA CGTGCTGGCC 2300
GGCAACAGCG TCAACCGCCG GGAATTCCTC AACCTGCTGC GCTTCCTCGG CAACGAACTG CGCATCCCGT TGGTTGGGGT AGGCACGCGC GACGCCTACC 2400
TAGCCATCCG CTCCGATGAC CAGTTGGAAA ATCGGTTCGA GCCGATGATG CTGCCGGTAT GGGAGGCCAA CGACGATTGC TGCTCACTGC TGGCCAGCTT 2500
CGCCGCTTCG CTCCCGCTGC GCCGGCCTTC CCCAATTGCC ACGCTGGACA TGGCTCGCTA CCTGCTCACA CGCAGCGAGG GCACCATAGG GGAACTGGCG 2600
CACTTGCTGA TGGCGGCGGC CATCGTCGCC GTGGAGAGCG GCGAGGAAGC GATCAACCAT CGCACACTCA GCATGGCCGT TTACACCGGA CCCAGCGAGC 2700
GGCGGCGGCA ATTCGAGCGG GAACTGATGT GAAGCCTGCG CCGCGCTGGC CGCTGCATCC CGCCCCGAAA GAAGGCGAGG CGCTGTCCTC ATGGCTCAAC 2800
CGCGTGGCCC TTTGCTATCA CATGGAGGAG CCCGACCTGC TGGAGCACGA TCTTGGTCAC GGCCAGGTCG ATGACCTGGA CACCGCGCCA CCACTCTCGC 2900
TGCTGGCGTT GCTTTCCCAG CGGAGCGGCA TCGAGCTGGA CCGGCTGCGC TGTATGAGTT TCGCCGGATG GGTGCCTTGG CTACTGGACA GCCTTGATGA 3000
CCAGATTCCA GACGCCTTGG AAACCTATGC GTTTCAGCTC TCGGTGTTGC TGCCAAGACT CCGCCGTAAG ACGCGATCCA TCACGAGCTG GCGTGCCTGG 3100
CTGCCCAGCC AGCCGATAAA CCGCGCCTGT CCGCTCTGCC TGAGCGATCC GGAGAACCAA GCCGTACTGC TCGCGTGGAA GCTGCCCCTG ATGCTGAGCT 3200
GCCCGCTGCA TGGCTGCTGG CTGGAATCCT ATTGGGGCGT GCCAGGGCGG TTTCTCGGCT GGGAGAACGC CGACGCCGAA CCGCGCACCG CCAGCGACGC 3300
GATTGCGGCG ATGGACCAGC GTACCTGGCA GGCACTGACA ACCGGTCACG TGGAGCTGCC GCGCCGACGC ATCCACGCCG GATTGTGGTT TCGACTTCTT 3400
CGCACGCTGC TCGATGAGCT GAACACCCCG CTTTCCGCGT GCGGAACCTG CGCGGGGTAT CCCCGCCAAG TCTGGGAAGG CTGCGGGCAT CCGCTGCGTG 3500
CTGGGCAAAG TCTGTGGCGA CCGTATGAAA CCCTGAATCC GATAGTACGG TTACAGATGC TGGAGGCGGC GGCAACGGCA ATCAGCTTGA TTGAGGTGAG 3600
GGACATCAGC CCGCCAGGCG AGCAGGCAAA GCTATTCTGG TCCGAGCCCC AAACCGGGTT CACCAGTGGC CTGCCGACGA AAGCGCCGAA GCCCGAGCCC 3700
ATCAATCACT GGCAGCGTGC AGTCCAGGCC ATCGACGAGG CCATCATTGA AGCGCGACAC AACCCCGAGA CGGCACGCTC GCTGTTCGCG TTGGCTTCCT 3800
ATGGTCGGCG CGATCCCGCT TCCTTGGAAC GGTTGCGCGC CACCTTCGTG AAGGAAGGCA TCCCGCCGGA ATTTCTGTCA CATTACCTGC CTGATGCACC 3900
CTTTGCATGT CTTAAACAAA ATGACGGGTT AAGTGACAAA TTTTGACGGA TAGAGCTTTC CGGCTCACAC TGTCACATAA TTGAACGTAT ACGTGACGGG 4000
TGAAAAGGTG CTGATCGGCT ACATGCGGGT ATCGAAGGCG GACGGATCCC AGTCCACCAA TTTGCAACGC GATGCGCTCA TCGCCGCTGG TGTGAGCCTT 4100
GCGCACCTTT ACGAGGATCT GGCCTCGGGC AGGCGCGATG ATCGCCCAGG GTTGGCTGCT TGCCTGAAGG CGCTTCGTGA AGGGGACACG CTGATCGTGT 4200
GGAAGCTCGA TCGGCTTGCC CGTGATTTGC GCCACCTGAT CAACACCGTG CACGACCTAA CTGCGCGTAG CGTGGGCCTG AAGGTCCTGA CCGGTCACGG 4300
TGCGGCGGTC GACACGACGA CTGCCGCCGG CAAGCTTGTG TTCGGTATTT TTGCCGCGCT GGCCGAGTTC GAGCGTGAGT TGATTTCCGA GCGAACAGTC 4400
GCTGGACTTA TCTCGGCGCG CGCTCGCGGC AGGAAAGGGG GGCGCCCCTT CAAGATGACC GCCGCCAAGC TACGCCTGGC GATGGCCAGC ATGGGGCAAC 4500
CGGAAACCAA GGTGGGCGAT CTCTGCGAAG AACTCGGGAT TACCCGGCAG ACGCTCTACC GGCACGTGTC GCCCAAGGGC GAACTGCGGC CAGACGGCGT 4600
AAAGCTGCTC TCCCTCGGTT CAGCCGCATA AATGGAGGCG ACCTGGAACG GGGCGCTGTT CAGTGCGGCA ACGATCCGAT TACCGGTGTC GACCCAGAGC 4700
AGCCGTAGAG CTTTTGGGAA AGCTGTCGTT CAACGCCGAA GTTCAGCCGC CAGAACGGAG CGCAGCGGAG TGATGGTCGG CTGCAACTTC ATGTTATGCC 4800
GCATCTGCCT GCTACTCAAC GACTGAGCGA TTTGTGTGCG CTTTTACAAC ATTCGTTGTG TGCTTGAGCA AGTCTAGACC GCCCGGCAGG CCGTGCCCCG 4900
GAATGACGAA CTGTGCTTCC GGGTAGTGTT GTTGAATCCG CTCAATGGAG GTGGGCCATT CAGCCAGATC GGCATCGGCC ACGTTCCCCG CAGACGTGCG 5000
TGACAACTCA TAAATCGCAC AACCACCATA GAGCACACTC GCAGACGGGA CGTACACAAC TAAGTTGTCG GTCGAATGCG CAGCACCAGG ATAGAAGAGT 5100
TCTACTGGAC CGAAGCGCAC TGCGTCCCCG CTCGATGAGA GTCCTTCTAG AGAGTGCGTG GGAATCTCGT TCCCCTCTAC CTCGGCTAGC CGGCGTGTCG 5200
ACGGTGATGC GTACGTTGCC ACCCCAGCCG CCCGAAGGAC ATCAACGCCG CCGACGCGGT CGTCATGAAA GTGCGTGGAG ACTGCACGCG TTACAGGAAG 5300
TCCAATTTGC TTCTCAATCT CCGCGAGAAG TGCCGCTGTG TTTTTCGCAC CCCACGCTGT ATCAATCAAA AGCAACTCAT CACCATCACG GACAATGAGA 5400
CCATTGGACG GGTAGACTGC GCCATCAAAC GACTGCGTTG CGATATGCGA CCAAACACCA TCGGCAATCT GGTAAAGCCG GACCTCCCCG ACCGGAATTT 5500
CGCTGACTGT CGGATACTCA CCGCTAGAAT CTACGGAAAA AGCGAGCGGA CTCGCAATAG CCATGATAGA CGCGGTCAAA TAGACCAATA ACTTACTCAA 5600
AAGTTTGAAC ATCAAAACTC CATGGGGGTG AGTGCGGCAT AACGTTTGAC ATGAGGGGCG ACCAAGGGCG CCAGCCCTTG GACGTCCCCC TCGATGGAAG 5700
GGTTAGGCAT CACTGCGTGT TCGCTCGAAT GCCTGGCGTG TTTGAACCAT GTACACGGCT GGACCATCTG GGGTGGTTAC GGTACCTTGC CTCTCAAACC 5800
CCGCTTTCTC GTAGCATCGG ATCGCTCGCA AGTTGCTCGG CGACGGGTCC GTTTGGATCT TGGTGACCTC GGGATCATTG AACAGCAACT CAACCAGTGC 5900
TCGAACCAGC TTGGTTCCCA AGCCTTTGCC CAGTTGTGAT GCATTCGCCA GTGACTGGTC TATTCCGCGT ACTCCTGGAT CGGTTTCTTC TTCCCACCAT 6000
CCGTCCCCGC TTCCAAGAGC AACGTACGAC TGGGCATACC CAATCGGCTC TCCATTCAGC ATTGCAATGT ATGGAGTGAC GGACTCTTGC GCTAAAACGC 6100
TTGGCAAGTA CCGTTCCTGT ACGTCAGCAA GTGTCGGGCG TGCTTCTTCT CCGCCCCACC ACTCGACGAT ATGAGATCGA TTTAGCCACT CATAGAGCAT 6200
CGCAAGGTCA TGCTCAGTCA TGAGGCGCAG TGTGACGGAA TCGTTGCTGT TGGTCACGAT GCTGTACTTT GTGATGCCTA ACGAATTAGC TCAGCGGGCG 6300
GCGAAGCCGT CCGCTGGAGC GACAAGTTGG GCTGTAGTCG GTGATGCCCG GTTTGACCGT TGAGCGGCGC ACTTCAACCT TGAACTCAGT TGATGCGCTC 6400
AAGCGCCGCA ACAGGATAAA TCTGTACTGA GCCTGGGTGA GCCTCAGACT CGACGGCGTA GCCTTCGGGG GTCAAATTTG TGCAGTACCA GCCGACAATC 6500
TGACCTTGCC AGGCGGCGCC GGATTTCTTG CGCACGCGAT CTCCTATACC AAACGTGGCG TTCGATGGGA ATACAAAATT GCCAGCAACT GGATTACTGA 6600
CTTCATTGCT ACTTCGTTCC ATTTCCGACC TTTCTTGTGA ACTTCTAGGT GTTCTATGTG GCCCGACGAC ACGCTGCATT GGTCACGCCC AACTTTGTTT 6700
TAGGGCGACT GCCCTGCTGC GTAACATCGT TGCTGCTCCA TAACATCAAA CATCGACCCA CGGCGTAACG CGCTTGCTGC TTGGATGCCC GAGGCATAGA 6800
CTGTACAAAA AAACAGTCAT AACAAGCCAT GAAAACCGCC ACTGCGCCGT TACCACCGCT GCGTTCGGTC AAGGTTCTGG ACCAGTTGCG TGAGCGCATA 6900
CGCTACTTGC ATTACAGTTT ACGAACCGAA CAGGCTTATG TCAACTGGGT TCGTGCCTTC ATCCGTTTCC ACGGTGTGCG TCACCCGGCA ACCTTGGGCA 7000
GCAGCGAAGT CGAGGCATTT CTGTCCTGGC TGGCGAACGA GCGCAAGGTT TCGGTCTCCA CGCATCGTCA GGCATTGGCG GCCTTGCTGT TCTTCTACGG 7100
CAAGGTGCTG TGCACGGATC TGCCCTGGCT TCAGGAGATC GGAAGACCTC GGCCGTCGCG GCGCTTGCCG GTGGTGCTGA CCCCGGATGA AGTGGTTCGC 7200
ATCCTCGGTT TTCTGGAAGG CGAGCATCGT TTGTTCGCCC AGCTTCTGTA TGGAACGGGC ATGCGGATCA GTGAGGGTTT GCAACTGCGG GTCAAGGATC 7300
TGGATTTCGA TCACGGCACG ATCATCGTGC GGGAGGGCAA GGGCTCCAAG GATCGGGCCT TGATGTTACC CGAGAGCTTG GCACCCAGCC TGCGCGAGCA 7400
GCTGTCGCGT GCACGGGCAT GGTGGCTGAA GGACCAGGCC GAGGGCCGCA GCGGCGTTGC GCTTCCCGAC GCCCTTGAGC GGAAGTATCC GCGCGCCGGG 7500
CATTCCTGGC CGTGGTTCTG GGTTTTTGCG CAGCACACGC ATTCGACCGA TCCACGGAGC GGTGTCGTGC GTCGCCATCA CATGTATGAC CAGACCTTTC 7600
AGCGCGCCTT CAAACGTGCC GTAGAACAAG CAGGCATCAC GAAGCCCGCC ACACCGCACA CCCTCCGCCA CTCGTTCGCG ACGGCCTTGC TCCGCAGCGG 7700
TTACGACATT CGAACCGTGC AGGATCTGCT CGGCCATTCC GACGTCTCTA CGACGATGAT TTACACGCAT GTGCTGAAAG TTGGCGGTGC CGGAGTGCGC 7800
TCACCGCTTG ATGCGCTGCC GCCCCTCACT AGTGAGAGGT AGGGCAGCGC AAGTCAATCC TGGCGGATTC ACTACCCCTG CGCGAAGGCC ATCGGTGCCG 7900
CATCGAACGG CCGGTTGCGG AAAGTCCTCC CTGCGTCCGC TGATGGCCGG CAGCAGCCCG TCGTTGCCTG ATGGATCCAA CCCCTCCGCT GCTATAGTGC 8000
AGTCGGCTTC TGACGTTCAG TGCAGCCGTC TTCTGAAAAC GACA
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| res |
3967-4001 |
35 |
ACACTGTCAC ATAATTGAAC GTATACGTGA CGGGT |
| attC AAC(6')-Ib core |
5643-5708 |
66 |
CGTTTGACAT GAGGGGCGAC CAAGGGCGCC AGCCCTTGGA CGTCCCCCTC GATGGAAGGG
TTAGGC |
| attI |
6693-6748 |
56 |
CTTTGTTTTA GGGCGACTGC CCTGCTGCGT AACATCGTTG CTGCTCCATA ACATCA |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tniA |
Tn5090 |
106-1821 |
Transposase |
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+ |
| tniB |
Tn5090 |
1824-2732 |
Accessory Gene |
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+ |
| tniQ |
Tn5090 |
2729-3946 |
Accessory Gene |
Target Site Selection |
+ |
| tniR |
Tn5090 |
4008-4631 |
Accessory Gene |
Resolvase |
+ |
| VIM-17 (ARO:3002287) |
Tn5090 |
4812-5612 |
Passenger Gene |
Antibiotic Resistance |
- |
| AAC(6')-Ib10 (ARO:3002581) |
Tn5090 |
5703-6257 |
Passenger Gene |
Antibiotic Resistance |
- |
| dfrB1 (ARO:3002864) |
Tn5090 |
6386-6679 |
Passenger Gene |
Antibiotic Resistance |
- |
| intI1 |
In2 |
6829-7842 |
Integron Integrase |
Class 1 |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniA |
TniA |
Tn5090 |
1716 |
106-1821 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
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MLNTRVHQSE VSMATDTPRI PEQGVATLPD EAWERARRRA EIISPLAQSE TVGHEAADMA AQALGLSRRQ VYVLIRRARQ GSGLVTDLVP GQSGGGKGKG
RLPEPVERVI HELLQKRFLT KQKRSLAAFH REVTQVCKAQ KLRVPARNTV ALRIASLDPR KVIRRREGQD AARDLQGVGG EPPAVTAPLE ?VQIDHTVID
LIVVDDRDRQ PIGRPYLTLA IDLFTRCVLG MVVTLEAPSA VSVGLCLVHV ACDKRPWLEG LNVEMDWQMS GKPLLLYLDN AAEFKSEALR RGCEQHGIRL
DYRPLGQPHY GGIVERIIGT AMQMIHDELP GTTFSNPDQR GDYDSENKAA LTLRELERWL TLAVGTYHGS VHNGLLQPPA ARWAEAVARV GVPAVVTRAT
SFLVDFLPIL RRTLTRTGFV IDHIHYYADA LKPWIARRER WPSFLIRRDP RDISRIWVLE PEGQHYLEIP YRTLSHPAVT LWEQRQALAR LRQLGREQVD
ESALFRMIGQ MREIVSTAQK ATRKARRDAD RRQHLKLSPP PVKPTPPDAD SADSQVGNLP PAKPFEQIEE W
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniB |
TniB |
Tn5090 |
909 |
1824-2732 |
+ |
| Class: | Accessory Gene |
| Sequence Family: | ATP binding protein? |
| Comment: | similar function to Tn7 tnsC and MuB |
Protein Sequence:
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VDEYPCIDLS HLLPAAQGLA RLPASERIQR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLIGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSPIAT LDMARYLLTR SEGTIGELAH LLMAAAIVAV ESGEEAINHR TLSMAVYTGP SERRRQFERE
LM
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniQ |
TniQ |
Tn5090 |
1218 |
2729-3946 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Target Site Selection |
| Comment: | identical to tniQ (Tn1721)|similar function to Tn7 tnsD? |
Protein Sequence:
|
MKPAPRWPLH PAPKEGEALS SWLNRVALCY HMEEPDLLEH DLGHGQVDDL DTAPPLSLLA LLSQRSGIEL DRLRCMSFAG WVPWLLDSLD DQIPDALETY
AFQLSVLLPR LRRKTRSITS WRAWLPSQPI NRACPLCLSD PENQAVLLAW KLPLMLSCPL HGCWLESYWG VPGRFLGWEN ADAEPRTASD AIAAMDQRTW
QALTTGHVEL PRRRIHAGLW FRLLRTLLDE LNTPLSACGT CAGYPRQVWE GCGHPLRAGQ SLWRPYETLN PIVRLQMLEA AATAISLIEV RDISPPGEQA
KLFWSEPQTG FTSGLPTKAP KPEPINHWQR AVQAIDEAII EARHNPETAR SLFALASYGR RDPASLERLR ATFVKEGIPP EFLSHYLPDA PFACLKQNDG
LSDKF
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniR |
TniR |
Tn5090 |
624 |
4008-4631 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
| Comment: | resolution of cointegrates || Protein: ACE81792.1 || identical to tniR (Tn1721) |
Protein Sequence:
|
MLIGYMRVSK ADGSQSTNLQ RDALIAAGVS LAHLYEDLAS GRRDDRPGLA ACLKALREGD TLIVWKLDRL ARDLRHLINT VHDLTARSVG LKVLTGHGAA
VDTTTAAGKL VFGIFAALAE FERELISERT VAGLISARAR GRKGGRPFKM TAAKLRLAMA SMGQPETKVG DLCEELGITR QTLYRHVSPK GELRPDGVKL
LSLGSAA
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| VIM-17 (ARO:3002287) |
VIM-17 |
Tn5090 |
801 |
4812-5612 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | cephamycin (ARO:0000044)||cephalosporin (ARO:0000032)||penam (ARO:3000008)||carbapenem (ARO:0000020)||penem (ARO:3003706) |
| Sequence Family: | VIM beta-lactamase (ARO:3000021) |
| Comment: | strict match to reference sequence for ARO:3002287 (bitscore: 538) |
Protein Sequence:
|
MFKLLSKLLV YLTASIMAIA SPLAFSVDSS GEYPTVSEIP VGEVRLYQIA DGVWSHIATQ SFDGAVYPSN GLIVRDGDEL LLIDTAWGAK NTAALLAEIE
KQIGLPVTRA VSTHFHDDRV GGVDVLRAAG VATYASPSTR RLAEVEGNEI PTHSLEGLSS SGDAVRFGPV ELFYPGAAHS TDNLVVYVPS ASVLYGGCAI
YELSRTSAGN VADADLAEWP TSIERIQQHY PEAQFVIPGH GLPGGLDLLK HTTNVVKAHT NRSVVE
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| AAC(6')-Ib10 (ARO:3002581) |
AAC(6')-Ib10 |
Tn5090 |
555 |
5703-6257 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Transpoase Chemistry: | aminoglycoside acetyltransferase |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | AAC(6') (ARO:3000345) |
| Comment: | strict match to reference sequence for ARO:3002581 (bitscore: 377) |
Protein Sequence:
|
MTNSNDSVTL RLMTEHDLAM LYEWLNRSHI VEWWGGEEAR PTLADVQERY LPSVLAQESV TPYIAMLNGE PIGYAQSYVA LGSGDGWWEE ETDPGVRGID
QSLANASQLG KGLGTKLVRA LVELLFNDPE VTKIQTDPSP SNLRAIRCYE KAGFERQGTV TTPDGPAVYM VQTRQAFERT RSDA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| dfrB1 (ARO:3002864) |
DfrB1 |
Tn5090 |
294 |
6386-6679 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target replacement (ARO:0001002) |
| Target: | diaminopyrimidine antibiotic (ARO:3000171) |
| Sequence Family: | trimethoprim resistant dihydrofolate reductase dfr (ARO:3001218) |
| Comment: | 98% identity with reference sequence ARO:3002864 from Escherichia coli (bitscore: 200)||Synonyms: dfr2a dfrII |
Protein Sequence:
|
MQRVVGPHRT PRSSQERSEM ERSSNEVSNP VAGNFVFPSN ATFGIGDRVR KKSGAAWQGQ IVGWYCTNLT PEGYAVESEA HPGSVQIYPV AALERIN
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| intI1 |
IntI1 |
In2 |
1014 |
6829-7842 |
+ |
| Class: | Integron Integrase |
| Sub Class: | Class 1 |
| Transpoase Chemistry: | Tyrosine |
| Sequence Family: | Class 1 Integron Tyrosine Integrase |
Protein Sequence:
|
MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVNW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGSKDRALML PESLAPSLRE QLSRARAWWL
KDQAEGRSGV ALPDALERKY PRAGHSWPWF WVFAQHTHST DPRSGVVRRH HMYDQTFQRA FKRAVEQAGI TKPATPHTLR HSFATALLRS GYDIRTVQDL
LGHSDVSTTM IYTHVLKVGG AGVRSPLDAL PPLTSER
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