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Internal Transposable Elements | |
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Internal Repeats | |
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| Name: Tn5060 |
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| Family: Tn3 Group: Tn21 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Pseudomonas sp. A19-1 | | |
| Place of Origin: | Russia | Date of Isolation: | 2003 |
| | Other Geographic Information: | Siberian permafrost |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 38 bp) |  | GGGGGCACCTCAGAAAACGGAAAATAAAGCACGCTAAG |
| IRR (Length: 41 bp) | | GGGGTCGTCTCAGAAAACGGAAAATAAAGCACGCTAAGCCG |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGGCACCT CAGAAAACGG AAAATAAAGC ACGCTAAGGC ATAGCTGACC TTGCCAGGCC TGCTTCGCCC TGTAGTGACG CGATCAACGG GCAGGAAACA 100
TTCCCCTTTC GTGCATGGCA GGCGCACACG AGTTCAGACA GCACGGTTTC CATGCGCGCC AAGTCGGCCA TCTTCTCGCG CACGTCCTTG AGCTTGTGTT 200
CGGCCAGGCT GCTGGCCTCC TCGCAGTGGG TGCCATCGTC GAGCCGCAAC AGCTCGGCAA TCTCGTCCAG ACTGAACCCC AGCCGCTGTG CCGATTTCAC 300
GAATTTCACC CGAACCACGT CCGCCTCCCC ATAGCGGCGG ATGCTGCCGT AAGGCTTGTC CGGTTCCGGC AACAGGCCCT TGCGCTGATA GAAGCGGATT 400
GTCTCCACGC TGACCCCGGC CGCCTTGGCA AAAACGCCAA TGGTCAGGTT TTCCAAATTA TTTTCCATAT CGCTTGACTC CGTACATGAG TACGGAAGTA 500
AGGTTACGCT ATCCAATCCA AATTCAAAAG GGCCAACGTA TGTCTGAACC ACAAAACGGG CGCGGTGCGC TCTTCGCCGG CGGGCTGGCC GCCATTCTTG 600
CATCGACCTG CTGCCTGGGG CCGCTAGTAC TGGTCGCCCT GGGCTTCTCC GGTGCTTGGA TCGGCAACCT GACGGTGCTG GAACCCTATC GACCGTTGTT 700
CATCGGCGCG GCGCTAGTGG CGCTGTTCTT CGCCTGGAAG CGGATTTACC GGCCCGTGCA GGCATGCAAG CCAGGTGAGG TCTGCGCGAT TCCGCAGGTG 800
CGCGCCACCT ACAAGCTGAT TTTCTGGATC GTGGCCGTGC TGGTCCTGGT CGCGCTTGGA TTTCCCTATG TCGTTCCATT TTTCTATTAA CCAGGAGTTC 900
ATCATGAAGA AACTGTTTGC CTCCCTTGCC CTCGCCGCCG CTGTTGCCCC GGTGTGGGCC GCTACCCAGA CCGTCACGCT AGCGGTTCCC GGCATGACTT 1000
GCGCCGCCTG CCCGATCACA GTCAAGAAAG CGCTCTCCAA GGTCGAAGGC GTGAGCAAGG TCGATGTGGG CTTCGAGAAG CGCGAGGCCG TCGTCACTTT 1100
TGACGACACC AAGGCCAGCG TACAGAAGCT GACCAAGGCC ACCGCAGACG CCGGCTATCC GTCCAGCGTC AAGCAGTGAG CCAGCAAGCC AACGACAACA 1200
GCGAGAGCCG CTTCATGGGA CTGATGACAC GCATTGCCGA TAAAACCGGC GCGCTCGGCA GCGTCGTTTC CGCGATGGGC TGCGCCGCCT GCTTTCCAGC 1300
CCTCGCCAGC TTCGGCGCGG CCATCGGGCT GGGCTTCTTG AGCCAGTACG AGGGACTGTT CATCAGCCGC CTGCTGCCGC TGTTTGCCGC GCTGGCCTTC 1400
CTGGCGAACG CGCTGGGTTG GTTCAGTCAT CGGCAATGGC TGCGCAGTCT GCTCGGCATG ATCGGCCCGG CCATCGTGTT TGCGGCCACG GTCTGGCTGC 1500
TCGGCAACTG GTGGACGGCG AACCTGATGT ACGTCGGCCT GGCCTTGATG ATTGGGGTGT CGATCTGGGA CTTCGTGTCG CCGGCGCATC GCCGTTGCGG 1600
ACCGGACGGC TGCGAACTCC CCGCCAAGCG CTTGTGAAAG ACGGCTGACC GTGCGACACG GCGGCCCACA CGAATAAGGA ACGATGGTAT GAGCACTCTC 1700
AAAATCACCG GCATGACTTG CGACTCGTGC GCAGTGCATG TCAAGGACGC CCTGGAGAAA GTGCCCGGCG TGCAATCAGC GGATGTCTCC TACGCCAAGG 1800
GCAGCGCCAA GCTCGCCATT GAGGTCGGCA CGTCACCCGA CGCGCTGACG GCCGCTGTAG CTGGACTCGG TTATCGGGCC ACGCTGGCCG ATGCCCCCTC 1900
AGTTTCGACG CCGGGCGGAT TGCTCGACAA GATGCGCGAT CTGCTGGGCA GAAACGACAA GACGGGTAGC AGCGGCGCAT TGCATATCGC CGTCATCGGC 2000
AGCGGCGGGG CCGCGATGGC AGCGGCGCTG AAGGCCGTCG AGCAAGGCGC ACGTGTCACG CTGATCGAGC GCGGCACCAT CGGCGGCACC TGCGTCAATG 2100
TCGGTTGTGT GCCGTCCAAG ATCATGATCC GCGCCGCCCA TATCGCCCAT CTGCGCCGGG AAAGCCCGTT CGATGGCGGC ATCGCCGCTA CCACGCCGAC 2200
CATCCAGCGC ACGGCGCTGC TGGCCCAGCA GCAGGCCCGC GTCGATGAAC TGCGCCACGC CAAGTACGAA GGCATCTTGG AGGGCAATCC GGCGATCACT 2300
GTGCTGCACG GCTCCGCCCG CTTTAAGGAC AATCGCAACC TGATCGTGCA ACTCAACGAC GGCGGCGAGC GCGTGGTGGC ATTCGACCGC TGCCTGATCG 2400
CCACCGGCGC GAGCCCGGCC GTGCCGCCGA TTCCCGGCCT GAAAGACACT CCGTACTGGA CTTCCACTGA AGCGCTGGTC AGCGAGACGA TTCCTAAGCG 2500
CCTGGCCGTG ATTGGCTCAT CAGTGGTGGC GCTGGAGCTG GCGCAGGCGT TCGCCCGACT CGGAGCGAAG GTGACGATCC TGGCTCGCAG CACGCTGTTC 2600
TTCCGCGAAG ACCCAGCTAT AGGCGAAGCC GTCACGGCCG CATTCCGCAT GGAGGGCATC GAGGTGAGGG AACACACCCA GGCCAGCCAG GTCGCGTATA 2700
TCAATGGTGA AGGGGACGGC GAATTCGTGC TCACCACGGC GCACGGCGAA CTGCGCGCCG ACAAGCTGCT GGTCGCCACC GGCCGCGCGC CCAACACACG 2800
CAAGCTGGCA CTGGATGCGA CGGGCGTCAC GCTCACCCCG CAAGGCGCTA TCGTCATCGA CCCCGGCATG CGTACAAGCG TGGAACACAT CTACGCCGCA 2900
GGCGACTGCA CCGACCAGCC GCAGTTCGTC TATGTGGCGG CAGCGGCCGG CACTCGCGCC GCGATCAACA TGACCGGCGG TGACGCGGCC CTGAACCTGA 3000
CCGCGATGCC GGCCGTGGTG TTCACCGACC CGCAAGTGGC GACCGTAGGC TACAGCGAGG CGGAAGCGCA CCATGACGGC ATCAAAACTG ATAGTCGCAC 3100
GCTAACGCTG GACAACGTGC CGCGCGCGCT CGCCAACTTC GACACGCGCG GCTTCATCAA ACTGGTGGTT GAAGAAGGCA GCGGACGACT GATCGGCGTG 3200
CAGGCAGTGG CCCCGGAAGC GGGCGAACTG ATCCAGACGG CCGCACTGGC GATTCGCAAC CGGATGACGG TGCAGGAACT GGCCGACCAG TTGTTCCCCT 3300
ACCTGACGAT GGTCGAAGGG TTGAAGCTCG CGGCGCAGAC CTTCAACAAG GATGTGAAGC AGCTTTCCTG CTGCGCCGGG TGAGGACAAG GAGGTGTGCG 3400
ATGAGCGCCT ACACGGTATC GCAACTGGCC CATAACGCTG GGGTGAGCGT ACATATCGTG CGCGACTACC TGGTGCGCGG CTTGTTACGG CCGGTGGCCT 3500
GCACCACGGG CGGCTACGGC GTGTTCGACG ATGCGGCCTT GCAACGGCTG TGCTTCGTGC GCGCGGCCTT CGAGGCGGGT ATCGGCCTGG ATGCCCTGGC 3600
GCGGCTGTGC CGTGCGCTCG ACGCAGCGGA CGGCGCACAA GCCGCAGCGC AGCTTGCCGT GCTGCGCCAG TTGGTCGAGC GGCGGCGCGC GGCGTTGGCC 3700
CATCTGGACG CGCAACTGGC CTCCATGCCA GCCGAGCGGG CGCACGAGGA GGCATTGCCG TGAACGCCCC TGACAAACTG CCGCCCGAGA CGCGCCAACC 3800
CGTTTCCGGC TACCTGTGGG GTGCGCTGGC CGTGTTGACC TGCCCCTGCC ATCTGCCGAT TCTCGCCGCC GTGCTGGCCG GGACGACCGC CGGTGCCTTC 3900
CTTGGCGAGC ATTGGGGTGT TGCCGCGCTC GCGCTGACCG GCTTGTTCGT TCTGGCCGTA ACGCGGCTGC TGCGCGCCTT CCGGGGCGGA TCATGACGAG 4000
TTCGCAGCCC GCCGGATGGA CGGCGGCCGA GTTGGCGCAG GCGGCGGCGC GCGGACAGCT TGACCTGCAT TACCAGCCGC TGGTCGATCT GCGCGATCAC 4100
CGGATCGCTG GCGCGGAAGC GTTGATGCGC TGGCGGCATC CGAGGCTTGG CCTGTTGCCG CCCGGCCAGT TCCTGCCGCT GGCCGAGTCG TTCGGCCTGA 4200
TGCCGGAAAT AGGCGCGTGG GTGCTGGGCG AGGCCTGTCG CCAGATGCAC AAGTGGCAAG GACCGGCATG GCAACCGTTC CGTCTTGCCG TCAATGTGTC 4300
CGCCAGCCAG GTTGGGCCAA CGTTCGACGA CGAGGTAAAG CGGGTGCTGG CCGATATGGC CCTGCCCGCC GAGCTTCTGG AGATCGAACT GACCGAATCG 4400
GTCGCATTCG GCAATCCAGC CCTGTTCGCC AGTTTCGACG CCTTGCGCGC CATCGGCGTG CGCTTCGCCG CCGACGACTT CGGCACCGGC TATTCCTGCC 4500
TGCAACATCT GAAATGCTGC CCCATCACCA CATTGAAAAT CGACCAATCC TTTGTCGCCA GGCTCCCGGA TGATGCCCGT GACCAAACTA TCGTGCGGGC 4600
GGTGATCCAG CTCGCGCACG GGCTGGGCAT GGAGGTGGTA GCCGAGGGTG TGGAAACACC CGACTGCCTT GCGTGGTTGC GGCAGGCGGG TTGCGACACG 4700
GTGCAGGGTT TCCTGTTCGC CAGGCCGATG CCGGCGGCGG CCTTCGTCGG CTTCGTCAAC CAATGGAGGA ACACCACCAT GAACGCCAAT GAACCGAGCA 4800
CCAGTTGCTG CGTGTGCTGC AAGGAAATCC CGCTCGATGC CGCCTTCACG CCGGAAGGGG CCGAGTACGT GGAGCATTTC TGCGGGCTGG AGTGCTATCA 4900
GCGCTTCCAG GCGCGGGCCA GCACTGCGAC CGAAACCAGC GTCAAACCGG ACGCTTGTGA TTCGCCGCCG TCAGGTTGAG GCATACCCTA ACCTGATGTC 5000
AGATGCCATG TGTAAATTGC GTCAGGATAG GATTGAATTT TGAATTTATT GACATATCTC GTTGAAGGTC ATAGAGTCTT CCCTGACATT TTGCAGGGAA 5100
TTCCATGACT GGACAGCGCA TTGGGTATAT CAGGGTCAGC ACCTTCGACC AGAACCCGGA ACGGCAACTG GAAGGCGTCA AGGTTGATCG CGCTTTTAGC 5200
GACAAGGCAT CCGGCAAGGA TGTCAAGCGT CCGCAACTGG AAGCGCTGAT AAGCTTCGCC CGCACCGGCG ACACCGTGGT GGTGCATAGC ATGGATCGCC 5300
TGGCGCGCAA TCTCGATGAT TTGCGCCGGA TCGTGCAAAC GCTGACACAA CGCGGCGTGC ATATCGAATT CGTCAAGGAA CACCTCAGTT TTACTGGCGA 5400
AGACTCTCCG ATGGCGAACC TGATGCTCTC GGTGATGGGC GCGTTCGCCG AGTTCGAGCG CGCCCTGATC CGCGAGCGTC AGCGCGAGGG TATTGCGCTC 5500
GCCAAGCAAC GCGGGGCTTA CCGTGGCAGG AAGAAATCCC TGTCGTCTGA GCGTATTGCC GAACTGCGCC AACGTGTCGA GGCTGGCGAG CAAAAGACCA 5600
AGCTTGCTCG TGAATTCGGA ATCAGTCGCG AAACCCTGTA TCAATACTTG AGAACGGATC AGTAAATATG CCACGTCGTT CCATCCTGTC CGCCGCCGAG 5700
CGGGAAAGCC TGCTGGCGTT GCCGGACTCC AAGGACGACC TGATCCGACA TTACACATTC AACGATACCG ACCTCTCGAT CATCCGACAG CGGCGCGGGC 5800
CAGCCAATCG GCTGGGCTTC GCGGTGCAGC TCTGTTACCT GCGCTTTCCC GGCGTCATCC TGGGCGTCGA TGAACTACCG TTCCCGCCCT TGTTGAAGCT 5900
GGTCGCCGAC CAGCTCAAGG TCGGCGTCGA AAGCTGGAAC GAGTACGGCC AGCGGGAGCA GACCCGGCGC GAGCACCTGA GCGAGCTGCA AACCGTGTTC 6000
GGTTTCCGGC CCTTCACCAT GAGCCATTAC CGGCAGGCCG TCCAGATGCT GACCGAGCTG GCGATGCAAA CCGACAAAGG CATCGTGCTG GCCAGCGCCT 6100
TGATCGGGCA CCTGCGGCGG CAGTCGGTCA TTCTGCCCGC CCTCAACGCC GTCGAGCGGG CGAGTGCCGA GGCGATCACC CGTGCTAACC GGCGCATCTA 6200
CGACGCCTTG GCCGAACCAC TGGCGGACGC GCATCGCCGC CGCCTCGACG ATCTGCTCAA GCGCCGGGAC AACGGCAAGA CGACCTGGTT GGCTTGGTTG 6300
CGCCAGTCTC CGGCCAAGCC AAATTCGCGG CATATGCTGG AACACATCGA ACGCCTCAAG GCATGGCAGG CACTCGATCT GCCTACCGGC ATCGAGCGGC 6400
TGGTTCACCA GAACCGCCTG CTCAAGATTG CCCGCGAGGG CGGCCAGATG ACACCCGCCG ACCTGGCCAA ATTCGAGCCG CAACGGCGCT ACGCCACTCT 6500
CGTGGCGCTG GCCACCGAGG GCATGGCCAC CGTCACCGAC GAAATCATCG ACCTGCACGA CCGCATCCTG GGTAAGCTGT TTAACGCTGC CAAGAATAAG 6600
CATCAGCAGC AGTTCCAGGC GTCAGGCAAG GCCATCAACG CCAAGGTACG TCTGTACGGG CGCATCGGTC AGGCGCTGAT CGACGCCAAG CAATCAGGCC 6700
GCGATGCGTT TGCCGCCATC GAGGCCGTCA TGTCCTGGGA TTCCTTTGCC GAGAGCGTCA CCGAGGCGCA GAAGCTCGCG CAACCCGATG ACTTCGATTT 6800
CCTGCATCGC ATCGGCGAGA GCTACGCCAC CCTGCGCCGC TATGCACCGG AATTCCTTGC CGTGCTCAAG CTGCGGGCCG CGCCTGCCGC CAAAAACGTG 6900
CTTGATGCCA TTGAGGTGCT GCGCGGCATG AACACCGACA ACGCCCGCAA GCTGCCAGCC GATGCACCGA CCGGCTTCAT CAAGCCGCGC TGGCAGAAAC 7000
TGGTGATGAC CGACGCCGGC ATCGACCGGC GCTACTACGA ACTGTGCGCG CTGTCCGAGT TGAAGAACTC CCTGCGCTCG GGCGACATCT GGGTGCAGGG 7100
TTCACGCCAG TTCAAGGACT TCGAGGACTA CCTGGTACCG CCCGAGAAGT TCACCAGCCT CAAGCAGTCC AGCGAATTGC CGCTGGCCGT GGCCACCGAC 7200
TGCGAACAAT ATCTGCATGA GCGGCTGACG CTGCTGGAAG CACAACTTGC CACCGTCAAC CGCATGGCGG CAGCCAACGA CCTGCCGGAT GCCATCATCA 7300
CCGAGTCGGG CTTGAAGATC ACGCCGCTGG ATGCGGCGGT GCCCGACACC GCGCAGGCGC TGATAGACCA GACAGCCATG GTCCTGCCGC ACGTCAAGAT 7400
CACCGAACTG CTGCTCGAAG TCGATGAGTG GACGGGCTTC ACCCGGCACT TCACGCACTT GAAATCGGGC GATCTGGCCA AGGACAAGAA CCTGTTGTTG 7500
ACCACGATCC TGGCCGACGC GATCAACCTG GGCCTGACCA AGATGGCCGA GTCCTGCCCC GGCACGACCT ACGCGAAGCT CGCTTGGCTG CAAGCCTGGC 7600
ATACCCGCGA CGAAACGTAC TCGACAGCGT TGGCTGAACT GGTCAACGCT CAGTTTCGGC ATCCCTTTGC CGGGCACTGG GGCGATGGCA CCACATCATC 7700
ATCGGACGGA CAGAATTTCC GAACCGCTAG CAAGGCAAAG AGCACGGGGC ACATCAACCC AAAATATGGC AGCAGCCCAG GACGGACTTT CTACACCCAC 7800
ATCTCCGACC AATACGCGCC ATTCCACACC AAGGTGGTCA ATGTCGGCCT GCGCGACTCA ACCTACGTGC TCGACGGCCT GCTGTACCAC GAATCCGACC 7900
TGCGGATCGA GGAGCACTAC ACCGACACGG CGGGCTTCAC CGATCACGTC TTCGCCCTGA TGCACCTCTT GGGCTTCCGC TTCGCGCCGC GCATCCGCGA 8000
CCTGGGCGAC ACCAAGCTCT ACATCCCGAA GGGCGATGCC GCCTATGACG CGCTCAAGCC GATGATCGGC GGCACGCTCA ACATCAAGCA CGTCCGCGCC 8100
CATTGGGACG AAATCCTGCG GCTGGCCACC TCGATCAAGC AGGGCACGGT GACGGCCTCG CTGATGCTCA GGAAACTCGG CAGCTACCCG CGCCAGAACG 8200
GCTTGGCCGT CGCGCTGCGC GAGTTGGGCC GCATCGAGCG CACGCTGTTC ATCCTCGACT GGCTGCAAAG CGTCGAGCTA CGCCGCCGCG TGCATGCCGG 8300
GCTGAACAAG GGCGAGGCGC GCAATGCGCT GGCCCGTGCC GTGTTCTTCA ACCGCCTTGG TGAAATCCGT GACCGCAGTT TCGAGCAGCA GCGCTACCGG 8400
GCCAGCGGCC TCAACCTGGT GACGGCGGCC ATCGTGCTGT GGAACACGGT CTACCTGGAG CGTGCGGCGC ATGCGTTGCG CGGCAATGGT CATGCCGTCG 8500
ATGACTCGCT ATTGCAGTAC CTGTCGCCAC TCGGCTGGGA GCACATCAAC CTGACCGGTG ATTACCTATG GCGCAGCAGC GCCAAGATCG GCGCGGGGAA 8600
GTTCAGGCCG CTACGGCCTC TGCAACCGGC TTAGCGTGCT TTATTTTCCG TTTTCTGAGA CGACCCC
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| res |
4964-5094 |
131 |
GCCGCCGTCA GGTTGAGGCA TACCCTAACC TGATGTCAGA TGCCATGTGT AAATTGCGTC
AGGATAGGAT TGAATTTTGA ATTTATTGAC ATATCTCGTT GAAGGTCATA GAGTCTTCCC
TGACATTTTG C |
| res_site_I |
4964-5002 |
39 |
GCCGCCGTCA GGTTGAGGCA TACCCTAACC TGATGTCAG |
| res_site_II |
5016-5059 |
44 |
ATTGCGTCAG GATAGGATTG AATTTTGAAT TTATTGACAT ATCT |
| res_site_III |
5063-5094 |
32 |
TGAAGGTCAT AGAGTCTTCC CTGACATTTT GC |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| merR |
Tn5060 |
34-468 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merT |
Tn5060 |
540-890 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| merP |
Tn5060 |
904-1179 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| merC |
Tn5060 |
1215-1637 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| merA |
Tn5060 |
1689-3383 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| merD |
Tn5060 |
3401-3763 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| merE |
Tn5060 |
3760-3996 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| urfM |
Tn5060 |
3993-4979 |
Passenger Gene |
Other |
+ |
| tnpM |
Tn21 |
4629-4979 |
Accessory Gene |
Inhibitor |
+ |
| tnpR |
Tn5060 |
5105-5665 |
Accessory Gene |
Resolvase |
+ |
| tnpA |
Tn5060 |
5668-8634 |
Transposase |
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+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merR |
MerR |
Tn5060 |
435 |
34-468 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | activator-repressor of mer operon |
| Target: | Mercury |
Protein Sequence:
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MENNLENLTI GVFAKAAGVS VETIRFYQRK GLLPEPDKPY GSIRRYGEAD VVRVKFVKSA QRLGFSLDEI AELLRLDDGT HCEEASSLAE HKLKDVREKM
ADLARMETVL SELVCACHAR KGNVSCPLIA SLQGEAGLAR SAMP
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merT |
MerT |
Tn5060 |
351 |
540-890 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | cytosolic mercuric ion transport protein |
| Target: | Mercury |
Protein Sequence:
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MSEPQNGRGA LFAGGLAAIL ASTCCLGPLV LVALGFSGAW IGNLTVLEPY RPLFIGAALV ALFFAWKRIY RPVQACKPGE VCAIPQVRAT YKLIFWIVAV
LVLVALGFPY VVPFFY
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merP |
MerP |
Tn5060 |
276 |
904-1179 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | mercury transport |
| Target: | Mercury |
Protein Sequence:
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MKKLFASLAL AAAVAPVWAA TQTVTLAVPG MTCAACPITV KKALSKVEGV SKVDVGFEKR EAVVTFDDTK ASVQKLTKAT ADAGYPSSVK Q
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merC |
MerC |
Tn5060 |
423 |
1215-1637 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | transmembrane protein mercury transport |
| Target: | Mercury |
Protein Sequence:
|
MGLMTRIADK TGALGSVVSA MGCAACFPAL ASFGAAIGLG FLSQYEGLFI SRLLPLFAAL AFLANALGWF SHRQWLRSLL GMIGPAIVFA ATVWLLGNWW
TANLMYVGLA LMIGVSIWDF VSPAHRRCGP DGCELPAKRL
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merA |
MerA |
Tn5060 |
1695 |
1689-3383 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | mercuric ion reductase |
| Target: | Mercury |
Protein Sequence:
|
MSTLKITGMT CDSCAVHVKD ALEKVPGVQS ADVSYAKGSA KLAIEVGTSP DALTAAVAGL GYRATLADAP SVSTPGGLLD KMRDLLGRND KTGSSGALHI
AVIGSGGAAM AAALKAVEQG ARVTLIERGT IGGTCVNVGC VPSKIMIRAA HIAHLRRESP FDGGIAATTP TIQRTALLAQ QQARVDELRH AKYEGILEGN
PAITVLHGSA RFKDNRNLIV QLNDGGERVV AFDRCLIATG ASPAVPPIPG LKDTPYWTST EALVSETIPK RLAVIGSSVV ALELAQAFAR LGAKVTILAR
STLFFREDPA IGEAVTAAFR MEGIEVREHT QASQVAYING EGDGEFVLTT AHGELRADKL LVATGRAPNT RKLALDATGV TLTPQGAIVI DPGMRTSVEH
IYAAGDCTDQ PQFVYVAAAA GTRAAINMTG GDAALNLTAM PAVVFTDPQV ATVGYSEAEA HHDGIKTDSR TLTLDNVPRA LANFDTRGFI KLVVEEGSGR
LIGVQAVAPE AGELIQTAAL AIRNRMTVQE LADQLFPYLT MVEGLKLAAQ TFNKDVKQLS CCAG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merD |
MerD |
Tn5060 |
363 |
3401-3763 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | secondary regulatory protein |
| Target: | Mercury |
Protein Sequence:
|
MSAYTVSQLA HNAGVSVHIV RDYLVRGLLR PVACTTGGYG VFDDAALQRL CFVRAAFEAG IGLDALARLC RALDAADGAQ AAAQLAVLRQ LVERRRAALA
HLDAQLASMP AERAHEEALP
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merE |
MerE |
Tn5060 |
237 |
3760-3996 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | mercury transport |
| Target: | Mercury |
| Comment: | similar to urf-1 in pKLH2 (GenBank AF213017), pKLH272 (Genbank Y08992), pMER610 (GenBank Y08993), pKLH210 (GenBank Y10102), Tn5036 (Genbank Y09025), orf1 in Tn501 (GenBank Z00027), and urf-1 in Tn5041 (GenBank X98999) |
Protein Sequence:
|
MNAPDKLPPE TRQPVSGYLW GALAVLTCPC HLPILAAVLA GTTAGAFLGE HWGVAALALT GLFVLAVTRL LRAFRGGS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| urfM |
UrfM |
Tn5060 |
987 |
3993-4979 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Function: | possible diguanylate phosphodiesterase |
| Sequence Family: | EAL (Pfam:PF00563)||DUF3330 (Pfam:PF11809) |
| Comment: | similar to urfM from E.coli||alternative gene symbols urf-2 and urf2M |
Protein Sequence:
|
MTSSQPAGWT AAELAQAAAR GQLDLHYQPL VDLRDHRIAG AEALMRWRHP RLGLLPPGQF LPLAESFGLM PEIGAWVLGE ACRQMHKWQG PAWQPFRLAV
NVSASQVGPT FDDEVKRVLA DMALPAELLE IELTESVAFG NPALFASFDA LRAIGVRFAA DDFGTGYSCL QHLKCCPITT LKIDQSFVAR LPDDARDQTI
VRAVIQLAHG LGMEVVAEGV ETPDCLAWLR QAGCDTVQGF LFARPMPAAA FVGFVNQWRN TTMNANEPST SCCVCCKEIP LDAAFTPEGA EYVEHFCGLE
CYQRFQARAS TATETSVKPD ACDSPPSG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpM |
TnpM |
Tn21 |
351 |
4629-4979 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Inhibitor |
| Function: | transposition regulator; reported to enhance Tn21 transposition and suppress resolution of cointegrate replicons in vivo |
| Comment: | 3'-end of urfM ORF, which is interrupted by insertion of In2||inhibits tranposition probably by inhibiting resolution |
Protein Sequence:
|
MEVVAEGVET PDCLAWLRQA GCDTVQGFLF ARPMPAAAFV GFVNQWRNTT MNANEPSTSC CVCCKEIPLD AAFTPEGAEY VEHFCGLECY QRFQARASTA
TETSVKPDAC DSPPSG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
Tn5060 |
561 |
5105-5665 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Function: | resolvase; serine site-specific recombinase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
| Comment: | identical to tnpR (TnAs3 ) |
Protein Sequence:
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MTGQRIGYIR VSTFDQNPER QLEGVKVDRA FSDKASGKDV KRPQLEALIS FARTGDTVVV HSMDRLARNL DDLRRIVQTL TQRGVHIEFV KEHLSFTGED
SPMANLMLSV MGAFAEFERA LIRERQREGI ALAKQRGAYR GRKKSLSSER IAELRQRVEA GEQKTKLARE FGISRETLYQ YLRTDQ
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn5060 |
2967 |
5668-8634 |
+ |
| Class: | Transposase |
| Function: | transposition, DNA-mediated (GO:0006313) |
| Transpoase Chemistry: | DDE |
| Comment: | identical to TnAs3 tnpA |
Protein Sequence:
|
MPRRSILSAA ERESLLALPD SKDDLIRHYT FNDTDLSIIR QRRGPANRLG FAVQLCYLRF PGVILGVDEL PFPPLLKLVA DQLKVGVESW NEYGQREQTR
REHLSELQTV FGFRPFTMSH YRQAVQMLTE LAMQTDKGIV LASALIGHLR RQSVILPALN AVERASAEAI TRANRRIYDA LAEPLADAHR RRLDDLLKRR
DNGKTTWLAW LRQSPAKPNS RHMLEHIERL KAWQALDLPT GIERLVHQNR LLKIAREGGQ MTPADLAKFE PQRRYATLVA LATEGMATVT DEIIDLHDRI
LGKLFNAAKN KHQQQFQASG KAINAKVRLY GRIGQALIDA KQSGRDAFAA IEAVMSWDSF AESVTEAQKL AQPDDFDFLH RIGESYATLR RYAPEFLAVL
KLRAAPAAKN VLDAIEVLRG MNTDNARKLP ADAPTGFIKP RWQKLVMTDA GIDRRYYELC ALSELKNSLR SGDIWVQGSR QFKDFEDYLV PPEKFTSLKQ
SSELPLAVAT DCEQYLHERL TLLEAQLATV NRMAAANDLP DAIITESGLK ITPLDAAVPD TAQALIDQTA MVLPHVKITE LLLEVDEWTG FTRHFTHLKS
GDLAKDKNLL LTTILADAIN LGLTKMAESC PGTTYAKLAW LQAWHTRDET YSTALAELVN AQFRHPFAGH WGDGTTSSSD GQNFRTASKA KSTGHINPKY
GSSPGRTFYT HISDQYAPFH TKVVNVGLRD STYVLDGLLY HESDLRIEEH YTDTAGFTDH VFALMHLLGF RFAPRIRDLG DTKLYIPKGD AAYDALKPMI
GGTLNIKHVR AHWDEILRLA TSIKQGTVTA SLMLRKLGSY PRQNGLAVAL RELGRIERTL FILDWLQSVE LRRRVHAGLN KGEARNALAR AVFFNRLGEI
RDRSFEQQRY RASGLNLVTA AIVLWNTVYL ERAAHALRGN GHAVDDSLLQ YLSPLGWEHI NLTGDYLWRS SAKIGAGKFR PLRPLQPA
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| References |
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Kholodii G, Mindlin S, Petrova M, Minakhina S. Tn5060 from the Siberian permafrost is most closely related to the ancestor of Tn21 prior to integron acquisition. FEMS Microbiol Lett. 2003 Sep 26;226(2):251-5. doi: 10.1016/S0378-1097(03)00559-7. PubMed ID: 14553919
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