Transposon
Name: Tn50580
Family: Tn402        Group: Tn5053
Evidence of Transposition: no
 Host     

Host Organism:Uncultured bacterium Molecular Source:plasmid pTP6
Place of Origin:Termirtau County, Kazakhstan Date of Isolation:2006
Other Geographic Information:Nura River sediment 1999-2000

 Map     



 Terminal Inverted Repeats (IR)     


 Sequence     
DNA SequenceLength  12076 
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCGTTTTC AGAAGACGAC CGCACCATCT GACTGGATGT AACGCCTGGT GTGCATACGG CTCCTGACAG CCCAATATCA GGAGTCGTCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGTG AGCATGGCGT CAGACACATC ATTGATTGCC GAGCAAGGCG TGGCCACCCT GCCCGATGCG 200
GCTTGGGCGC AGGCCCGGCA ACGGGCGGAA ATCATCGGGC CGCTGGCAGC GCTTGATGTG GTCGGGCATG AAGCCGCCGA TGCCGCTGCT CACGCGCTTG 300
GCCTGTCCAG GCGGCAGGTG TATGTCCTAA TCCGCCGTGC CCGGCAAGGT GCTGGGCTTG TGACGGACCT GGCTCGCAGC CGATCCGGCG GCGGAAAAGG 400
CAAGGGACGC TTGCCGGAAT CAGTTGAGCG CATCATCCGC GAGTTGCTGC AAAAGCGCTT CCTGACCAAG CAGAAGCGTA GCCTGGCAGC GTTCCACCGC 500
GAGGTCGCGC AGGCTTGCAA AGCGCAAAAG CTGCGGGCGC CGGCGCGCAA CACCGTGGCT CTGCGGATCG CCGGCCTCGA TCCGCTCAAG GCCACTCGCC 600
GCCGGGAAGG TCAGGATGCG TCCCGCAGCC TGCAAGGTGT CGGTGGTGAG CCTCCCGCCG TGACCGCGCC ACTGGAACAA GTGCAGATTG ATCACACGGT 700
CATCGACCTG ATCGTGGTGG ACGAGCGCGA CCGGCAACCG ATTGGCCGTC CGTATCTGAC CATCGCCATC GACGTGTTTA CCCGCTGCGT GCTCGGCATG 800
GTCGTCACGC TGGAAGCGCC GTCATCTGTT TCGGTCGGCC TGTGCCTTGT GCATGTCGCC TGCGACAAGC GTCCCTGGCT GGAGGGTCTG AACATAGAAA 900
TGGAGTGGCC GATGAGCGGC AAGCCCAGGC TGCTCTACCT GGACAACGCG GCCGAGTTCA AGAGCGAAGC GCTACGCCGA GGCTGCGAGC AGCATGGCAT 1000
CCGGCTTGAC TATCGCCCGC TCGGGCAGCC GCACTACGGC GGCATCGTGG AACGGATCAT CGGCACGGCG ATGCAGATGA TCCACGACGA ATTGCCAGGG 1100
ACGACCTTCT CCAACCCTGA CCAGCGCGGC GACTACGATT CCGAAAACAA GGCCGCCCTG ACGCTGCGTG AGCTGGAGCG CTGGCTCACA TTGGCGGTCG 1200
GCACCTACCA CGGCTCCGTG CACAACGGCC TGCTCCAGCC GCCGGCAGCG CGCTGGGCCG AAGCTATCGC GCGGACCGGC GTGCCAACCG TCATCACTCG 1300
CACCACGGCT TTTCTGGTCG ATTTTCTGCC CATCATCCGC CGCACGCTGA CCCGCACCGG CTTCGTCATC GACCACATCC ATTACTACGC CGATGCGCTC 1400
AAGCCGTGGA TAGCTCGGCG CGACCGCTTG CCTGCGTTCC TGATCCGGCG CGACCCGCGC GACATCAGCC GCATTTGGGT GCTGGAGCCG GAGGGGCAGC 1500
ACTATCTGGA AATTCCATAC CGCACCTTGT CGCACCCGGC TGTCACCCTC TGGGAACAAC GACAGGCGCT GGCGAAATTG CGGCAGCAAG GGCGCGAACA 1600
GGTGGATGAG TCGGCGCTGT TTCGCATGAT CGGCCAGATG CGCGAAATCG TGTCCACCGC GCAGAAAGCT ACGCGCAAGG CGCGGCGCGA CGCGGATCGA 1700
CGCCAGCATC TCAAGGCAAC GGCAGTTCTT TTCAAAACCA CGCCACCACC GGACGCGGAC ATGGCTGACC CGCAGGCAGA CAACCAGCCA CCTGCCAAAC 1800
CGTTCGACCA GATTGAGGAG TGGTAGCCGT GGAAGAATAT CCCATCATCG ACTTGTCCCA CCTGATGCCG GTGGCCCAGG GCTTGGCCCG TCTTCCGGCG 1900
GACGAACGCA TCCATCGCCT TCGCGCTGAC CGCTGGATCG GCTATCCGCG AGCAGTCGAG GCGCTGAATC GGCTGGAAGC CCTGTATGCG TGGCCGAACA 2000
AACAACGCAT GCCCAACCTG CTGTTGGTCG GTCCAACCAA CAACGGCAAG TCGATGATCG TCGAGAAATT CCGCCGCACC CACCCGGCCA GCTCCGACGC 2100
CGACCAGGAG CACATTCCGG TACTGGTCGT GCAGATGCCA TCCGAACCGT CGGTAATCCG CTTCTACGTC GCGCTACTTG CCGCGATGGG CGCGCCATTG 2200
CGCCCGCGCC CACGGCTGCC GGAAATGGAG CAATTGGCGC TGGCACTGCT ACGCAAGGTC GGCGTGCGCA TGCTGGTGAT CGACGAATTG CACAACGTCC 2300
TGGCCGGCAA CAGCGTCAAC CGCCGGGAAT TCCTCAACCT GCTGCGTTTC CTCGGCAACG AGCTGCGCAT CCCGCTGGTC GGGGTCGGCA CACGCGATGC 2400
CTACTTGGCG ATCCGCTCGG ACGACCAGTT GGAAAACCGC TTCGAGCCGA TGATGCTGCC GGTGTGGGAG GCCAACGACG ATTGCTGCTC ACTGCTGGCC 2500
AGCTTCGCGG CTTCGCTCCC GCTGCGGCGA CCCTCGTCGA TTGCCACGCT GGATATGGCC CGCTACCTGC TCACGCGCAG CGAGGGCACC ATCGGCGAGC 2600
TGGCGCACCT GTTGATGGCG GCGGCCGTCG CTGCCGTGGA GAGCGGTGAG GAAGCGATCA ACCATCGCAC GCTCAGCATG GCCGATTACA CCGGTCCCAG 2700
CGAGCGGCGG CGGCAATTCG AGCGGGAACT GATGTGAAGC CAGCGCCACA CTGGCCACTG CATCCGGCTC CCAGGGAAGG CGAAGCCTTG TCTTCGTGGC 2800
TCAACCGCGT GGCCCTTTGC TATCACATGG AGGTGTCCGA GCTGCTGGAG CACGATCTTG GTCACGGCCA GGTTGATGAC CTGGACACCG CGCCACCACT 2900
GGCGCTGCTG GCGATGCTCT CCCAGCGGAG CGGCATCGAG CCGGACCGGC TGCGTTGCAT GAGTTTCGCC GGCTGGGTGC CTTGGCTACT GGACAGCCTT 3000
GATGATCAGA TTCCAGATGC ATTGGAAACC TATGCGTTCC AGCTCTCGGT GCTGCTGCCG AAACTCCGCC GTAGGACGCG ATCCATCACG AGCTGGCGTG 3100
CCTGGCTGCC CAGCCAGCCG ATACATCGCG CCTGCCCGCT CTGTCTGAAC GATCCGGAGA ACCAAGCCGT ACTGCTCGCG TGGAAGCTGC CCCTGATGCT 3200
GAGCTGCCCA CTGCATGGCT GCTGGCTGGA ATCCTATTGG GGCGTGCCAG GGCGGTTTCT CGGCTGGGAG AACGCCGACG CCGAACCGCG CACTGCCAGC 3300
GACGCGATTG CGGCGATGGA CCAGCGTACC TGGCAGGCAC TGACGACCGG CCACGTGGAG TTGCCGCGCC GACGCATCCA CGCCGGATTG TGGTTTAGGC 3400
TGCTACGCAC GCTGCTCGAT GAGCTGAACA CCCCGCTTTC GACGTGCGGC ACCTACGCGG GGTATCTCCG CCAAATCTGG GAATGCTGCG GGCATCCGCT 3500
GCGTGCTGGG CAAAGTCTGT GGCGACCGTA TGAAACCCTG AACCCGGCAG TACGGTTGCA GATGCTGGAG GCGGCGGCAA CGGCAATCAG CTTGATTGAG 3600
GTGAGGGATA TAAGCCCGCC AGGCGAGCAC GCAAAGCTAT TCTGGTCCGA GCCCCAAACC GGGTTCACCA GTGGCCTGCC GGCGAAAGCG CCGAAGCCCG 3700
AACCCGTCGA TCACTGGCAG CGTGCAATCC AGGCCATTGA TGAGGCCATC ATTGAAGCAC GACACAACCC CGAGACGGCA CGCTCGCTGT TCGCGTTGGC 3800
TTCCTATGGT CGGCGCGACC CCGCTTCCTT GGAACAGTTG CGCGCCACCT TCGCGAAGGA AGGCATCCCC CCGGAATTTC TGTCACATTA TGAGCCTAGC 3900
CTACCCTTTG CATGCCTTAG ACAGAATGAC GGGTTAAGTG ACAAATTTTG ACGTGCAGAG CTTCCCGATG CAAACTGTCA CATAATCGAA CGTATATGTG 4000
ACAGGTACAA GATGCTGATT GGCTACATGC GAGTATCGAA GGCGGATGGC TCCCAGGCGA CGGACTTGCA GCGCGATGCG CTGGTCGCGG CCGGTGTTGA 4100
TCCGGCGCAT CTCTATGAAG ACCAAGCGTC CGGAAAACGC GAGGATCGTC CCGGTCTGGC GAGCTGTCTG AAGGCACTAC GGCCAGGCGA CACGTTGGTC 4200
GTTTGGAAAC TGGATCGGCT CGGGCGCGAC CTGCGCCATC TGATCAATAC CGTCCATGAC CTGACCGGAC GCGGCATCGG CCTCAAGGTG CTGACCGGGC 4300
ACGGCGCGGC CATTGACACC ACGACCGCCG CCGGCAAGCT GGTCTTCGGT ATCTTCGCCG CGCTGGCCGA GTTCGAGCGC GAGTTGATCG CCGAGCGCAC 4400
CGTGGCGGGC CTGGCCTCAG CACGGGCACG CGGCCGGAAA GGCGGCCGGC CGTTCAAGAT GACCGCCGCC AAGCTGCGGC TGGCGATGGC GGCAATGGGT 4500
CAGCCAGAGA CCAAGGTCGG CGACCTGTGC CAGGAACTTG GCGTCACGCG GCAGACCCTG TATCGGCATG TTTCACCCAA GGGTGAGCTA CGTCCAGATG 4600
GCGAGAAGCT ACTCAGCCGA ATTTGATGCC GGCATGAGGC AACGTAGCGA CAGCGTGGTT TGTCTCAATG GGAAGCGCTC ATGATCGATC TTTGAAGGCC 4700
CGCAGCAGTC GTGTCACAGA CAGGACGAAC AAACCGGTCA GCGTGAGGGC TGCGATACCC CAGTACTCTC CGATGAACGC GCCGGCCGTC GTGCCGGCCA 4800
GCACAATGGC GAGAATCGGC AAATGGCAGG GACAGGTGAG CACGGCCAGC GCGCCCCACA GGTAGCCGGT GATCGGTTTG TGCGTCTCGG CCGGCATGCG 4900
CTCGGGGCTG TTCATGGCAA ACTCTCCGCA TGCTGTGCCG GCGCGGTCGG CATGGCGGCC AACTGCACTT CCAGATTGGC CAACGCTTCG CGCCGGCGTT 5000
CGACGAACTG ACGCAGCACA GCAAGCTGCG CGGCAGTTTC ATCGCAGTTC GCCGCATCCA GCGCCCGGCA CAGCCGCGCC AATGCGCCGA GGCCGATGCC 5100
CGCCTCGAAG GCGGCCCGCA CGAAGCACAG TCGCTGCAAG GCGGCGTCAT CGAACAGGCC GTAGCCACCC GTGGTGCAGG CGACTGGCCG CAGCAATCCG 5200
CGCAGCAGGT AGTCGCGCAC GATATGCACG CTCACCCCGG CATCAAGGGC CAGCCGGGAC ACCGTGTAGG CGTTCATCGA ACACCTCCTT TTGGTCGGTT 5300
CACGGCAATG CATATACCGT TTCGCCGAGT TCAATCCGCG CGCTGCGAAT CCGATGCCGG TGCCGTAGAA CATTGGGTCG ATATCCGATC ACGGTGTCCT 5400
AGATGACATG GTCTGCAACA GATGTCGATT AAACTCCTGG CCCAAGCCGA AAGCCTCGTG GACACTGACG ATCGCCAATC CTTCCAATCC TTGATGCTTG 5500
GAGGCCCAGT CTTCCGCCGT CGGGACAGAT GCAAAGAAAT GTACATGGCA ACAGAAGGAC TGACGAACGT CGGCTGCTTC CTGCGGCAAT ACCAAGGACA 5600
CCGCCATGCC GGCAGGTTCG ACAGCCTGTA TCTCGCTGGG TGAAACCGTA AGCGAAACGG GTGCTCCAGT TGCAGCGCAA TGCGACGAGA CGCGAGCTGT 5700
ACGGCCGATT AACGCCGGGA GCATCAGGGT GTCCAGCGCG CACCAGGCAT ACAGCCGGCG GTTGTCAATT TCCAAGACAT GCGACGTCTC GCGCAAGGTG 5800
AGGACATAGC CGATGATGTT CCCATCGTTG TCGTATTCGG TACTGGTGGC TTGTTCGAGC ACAGCCGCCA CTTGCTCAGC GGGCCAGCCA AGAGTCCTGG 5900
CAAGCGTAGT TCGCGAAATC GGGCGTCCCT TGGCAAGTTC ACCCAGTAGC GCGACCAAGA ACTCCGCAAA ACCTTTGGGC CGGTTGGTCG GGGTGAGACG 6000
TTCTAAAATA TATGGGGCGA GCTTCATGGT TCCATCTCCT ATTTGAATTG GATAGCGTAA CCTTACTTCC GTACTCATGT ACGGAGTCAA GCGGTATGGA 6100
AAATAATTTG GAGAACCTGA CCATTGGCGT TTTTGCCAAG GCAGCCGGCG TCAACGTGGA GACCATCCGG TTCTATCAGC GCAAGGGCTT GTTGCCCGAG 6200
CCGGACAAGC CCTATGGCAG CATTCGCCGC TATGGCGCGG CGGACGTGAC ACGGGTGCGA TTCGTGAAAT CGGCCCAGCG GTTGGGCTTC AGCCTGGATG 6300
AAATCGCCGA GTTGCTGCGG CTCGACGATG GCACCCACTG CGAGGAGGCC AGCAGCCTGG CCGAGCACAA GCTCCAAGAC GTGCGCGAGA AGATGGCCGA 6400
TTTGGCGCGC ATGGAGGCTG TGCTGTCTGA CCTGGTGTGC GCCTGCCATT CGCGGCAGGG GAATGTTTCG TGTCCGCTGA TTGCGTCGTT GCAAGGTGGA 6500
ACGAGCTTGG CAGGGGCTTC CACAGCTTAG CGTGCTTTAT TTTCCGTTTT CTGAGGTGCC CCCTACCAGC AACGCACCGC CGAAGACCGG CAGCAGGAGC 6600
GCGAGCAATT CCAGATGGTT AACCGGGGCC TGAAAGACCA GATTCAAGAC CTGCAAAACC GGCTCATCCA AGCCGAGTCA AGAGCGTCCG AGCTGATAGA 6700
CACTAATGCG CAATTACAAC GACAAACGCA TGAGCTCGAA CAGGCCAATG CGATGCACAA AAGCACCTTG GATAGGCAAG TGGCCGATAT CCAGAACTTG 6800
GAGCATCAAC TTAACGACGC CTCGGCAAAA AACCGGGAGC GGAAGCATGA AAGCAAACAA TTGGCGGATA ATATTGCCGC ACTCGCAAGC CAGAAAGCAG 6900
ATGCCGATAA GCAGGTGGCC GTACTATCCC AAGCATTAGA GGTCACCAAA ACGGATCTGA AAGCCTCTCA GAATAGAGCG GAAGTTCTGT CCGATGAGAA 7000
CAAGTTGATT CTTCAGGAAA AAGCGGTGAT TCAGGGGCAG TTTAAGCAGC TTCAGGAGTC ACTGTCGCGA TAAAGGCTTT AGTCAAACAT TCATCGAAAA 7100
AGCTATATTA ATCAATATAT TATATACGAA GTGGCTAATT CCAACGCTTT TACCGGCCGG ACCTCAAGTA GCTGCACCGG CCGCCATTTC ATTCAAAGAG 7200
GCCTCGACGA CAGTCAAAAC TGTTCGACGC ACGTCGATCT TCCATCGCAC GCGCTCGACG CATCGGTCCA GGCTTTCGCT ATCGTCTGCG TCCAATGCTT 7300
TGCAAAGTCG CGCCAGTTCG TCGAGCCCAA TTCCGGACTC GAAGGCTGCG CGGAGAAACC GCAGCCTTCC GAGTGTTTTG TCATCGAAAA TGTTCTAGCC 7400
ACTTTCGGTT CGCCGAGCAG GGTGCAACAA GCCGCGTATC ATGTAGTCGC GCACGACATG CACGCTGACG CAAGCATCAT CAGCCAGCTT CGATATCGAG 7500
TACGCATTCA TACTGGGCTT TCCTCGCAGT CCTCTAGCAG CTTAAGCGCG ACATCATGAC CAAGGTCGAA CGCACTCTCG ACAGGCACGA CCTCAATCCC 7600
TTGGTGGGTC GAAGCCCACG AATTTGCAAT AGACGGAGAC GCAAAGAAAT GCACATGACA GCAAAACGAA CAACGAATGT CGGGCGAAGT ATCCGGAGTT 7700
CGCAGTGAAA CCATTGCTTC TGCCGGTTCG ACATGAAGCA CTGCTTCTGG TGCAACGGTG AGAGTGATCG GCCTACCGGT GGCGGCGCAG CGGGAAGTGA 7800
CACGGGCAAT CTTGCCGGTC AAGGCGGGAA ACATCAAGGT GTCCAGCGCA CACCATGTGT ACAAATGACG GCCATCCACC TCAAAAACGT GAGAGGTTTC 7900
ACGTAGTGTC AGCCCCAGTC CAATGATATT GGCCTCGTCG TCATATTCCG TACCAGGTGC CTGCTCAAGT ACCGTTGCAA CTCTCGCTCC AGACCATCCG 8000
AGTGCGCCGG CGAGCTTTTC GCGTGATACA GGTCCCCCCA TCGCTAGCTG TCGGAGCAGC GCGACAAAGA GCGTTGCGAA CTCTTTAGGA TGATTGCCAG 8100
ATGAAAGGCT TTCGGCAATC TTTTTGGAAT AAATAGTCTT GTCCATTTTC CACCTGTTAT ATCGGGCAGC GATCAACCGG GATAAACCTT ACTCGGCGGT 8200
TACGTCCTGC GCTTAACAAA GACGAATTAC TTTGTGCCTT GCCGGCGTTG CCATTCCTCG GCCAGCAGCT GGGCTTGCTG TAACTGTTCG GGCTTCATTT 8300
GAGCTGCATA GTCTGCAACG ACTTTTGCTG CTGTCGGTTC TCCCGACGCT GCGGCCAGAC TCATCCACTG GTATGCCTGC ACCTGGTCGG GCGCGATGTC 8400
GGTAAGACCC TTTGCAAACA GCTGGGCCAG CCTGACTTGA GCCTGCGTGT GTCCCTGCTC GGCAGCGAGG CGGTACCACT TGAAAGCCTC TGCATCGTTG 8500
GCAGGAGCCG CACGCCCATT CTTATACATA CCGTCGACTT CACTTCCGTA GAGGCGCCCG AGGTTGAACT GTGCATCGGC TTCACCCTGC TCGGCCGCCC 8600
TGCGGAACCA CTGGATCGAT GCCGCGTGGT TTTGCTTTAC GCCCATACCG CATTTGTACG CAAGACCCAT GATGTTCTGA GCCATGGCAT CGCCAGCCCT 8700
GGCCTTCTTT TCCCAATCAC TGACGGTCTC TGGCGACAAT GTTTCAATCG CGGCGCCGAG CTTAGAAAAA TCATAAGCCG CCAACGCTTG GTTTGGCATG 8800
CCTAACGTTG CGGTACTTGC CAGTACGATC GTCAAGCACG CGCGTACACG GCGTAATTTA AGTCTGATGT CACAAAACAT AAAAACTCCT CTGTCCCTGT 8900
TTTGGTGCCC AAGGTTTAGC CGGCACAGCA CGATAGCTGT GTCACATCCT TCGAAAAAGT CTGTGCCACC AGTTTGAGAC CTTCAACCAT GGTGAGGTAA 9000
GGGAAAAGCT GGTTAGCCAG ATCCTGGACG GTCATGCGGG CCCGGATGGC AATCGCGGCA GTCTGGATGA TTTCGCCTGC TTCCGGTGTC ACAGCCTGGA 9100
CTCCGAGAAT GCGTCCGGAC CCTGCCTCAG CAACAAGCTT GATAAAGCCG CGGGTATCGA AGTTGGCGAG TGCACGCGGC ACATTGTCGA GCGTGAGCGT 9200
ACGGCTTTCG GTTTGCAGAC CAATGCGCTG GGCCTCTGCT TCACTGTAGC CTACCGTGGC AACTTGCGGA TCGGTGAACA CGACTGCCGG CATGGCGTCG 9300
AGATCGAGCT TTACGTCGCC GCCGGTCATA TTAATGCCAG CCCGGGTACC AGCCGCGGCT GCAACGTAGA CGTACTGAGG CTGGTCAGTG CAGTCGCCAG 9400
CTGCGTAAAT GTTCGAAGCA CTCGTGCGCA TGCCTTGATC GATCAGGATG CGATGTTGCG AGTCAAACGT CACACCTGCG CGCTCGAGAT TCAGGCTTGC 9500
GGTATTTGGC GTGCGGCCGG TGGCAACAAG CAATTGATCC ACCTTTAACT CGCCCTGCGC GGTCGTCAGG ATGAATTGGC GGTCGCAATA GGTCACGGCA 9600
CTCGCCTGCG TCTGTGTCAG CACCGTGATG CCTTCCGCAC GGAAAGCTGC AGTCACGGCC TCGCCAATGG CAGGGTCGTC ACTGGCAAAC AAGGTGCGCC 9700
GGGCCAGGAC CGTCACCTCG CTGCCCAAGC GCGCAAACGC TTGTGCCAGT TCCAGTGCTA CGACCGAGGC GCCAATTACT GCCAGCCGTT TAGGAATGGC 9800
TTCGCTAACC AGGGCTTCGG TGGACGTCCA ATATGGCGTT CCTGCAAGAC CAGGCAACGG CGGGATGGCA GCGCTTGCAC CAGTGGCAAT GAGACAGCGA 9900
TCGAAGGCCA CTTCGCGAGT GTCACCTTCT GCCGCTTCCA CGATAAGCGT TTGGCCATCC TTGAATCGGG CGCTGCCTCG CACCAGATTG ATCGACGGAT 10000
TGCTTTCGAG GATGCTTTCA TATTTAGCAT GACGCAGCTC GTCCACACGG GCCTGCTGTT GCGCCAGCAG ACGGTCACGC AGGACAACTG GGGGCGTTGC 10100
CGACAGTCCC ACGTCAAAAG GACTTTCGCG TCGCAGATGA GCGATATGCG CTGCCCGAAT CATGATCTTA GAAGGGACGC AGCCCACGTT GACGCAGGTG 10200
CCGCCGATAG TTCCCCGCTC GATCAGGGTG ACACGGGCAC CGTTTTCAGC TGCCTTCAGC GCTGCTGCCA CAGCGGCGCC GCCAGTACCG ATGATCGCCA 10300
CATGCAGCTG ACCTGCCGGT TTCTCCACCG CGCGCTCGCC GCTCAGCCAC TGGGCGGCTT TGCCAAGGAG TCCTGGCTGT TCAACACTGC GCTCTTTGCT 10400
TTCAAATTCG TCTGTAGGCG TAGCACCGTA ACCAAGGGCG CCCACTGCTG CTACGAGCGC GGACACGTCA AGCCTATTGC CTGTGACTTG CGCCTTGTTC 10500
GATGGATAAT CGACAGCCGC TCGCGTTACG CCGGGGACCG CCAGCAGCGC GTCCTCAACG TGCCTTGTAC AACTTGGGCA AGTCATTCCC GCCACGCTCA 10600
AACCAACTTC GTTTAACTCT TGCATTCCGC TCTCTCTTTT ATCCGTTGTG CCCAAGCCAA CTAGTACGAC GCCTCGGTCA CTGAATCGGT TGTGCGCTTC 10700
AGGGAACAGG CTCCGTGGGT CGTTTACAGG CTGCTCACGC GATGACGACC GGCAGAATCG CCTGAGCGGC ATCTCTGCCG TGGTTCTAGC GATGCTGCCG 10800
TTATTTGTTG CCTTACTTCT TCAGCTCAGA TGGGTAGCCT ACATCCGTCG TCGCCTTGCT AAGCGCCTGG ACGTTGGTCT TCGCATCGTC AAACGTTACG 10900
ACGGCAAGCT TGGTTGAGAA GTCGACCTCG GTCTTGCTAA CACCGTCGAC CTTGCTCAAG GCCTTTTTAA TGGTGATAGG ACAAGTCGCG CAGGTCATGC 11000
CAGGAACGGC CAAGGTGACC GTCTGCGTGG CGGCCCACAC CGGGGCAACA GCGGCGGCGA GGGCAAGGGA GGCAAACAGT TTCTTCATGA TGAACTCCTG 11100
GTTAATAGAA AAATGGAACG ACATAGGGAA ATCCAAGCGC GACCAGGACC AGCACGGCCA CGATCCAGAA AATCAGCTTG TAGGTGGCGC GCACCTGCGG 11200
AATCGCGCAG ACCTCACCTG GCTTGCATGC CTGCACGGGC CGGTAAATCC GCTTCCAGGC GAAGAACAGC GCCACTAGCG CCGCGCCGAT GAACAACGGT 11300
CGATAGGGTT CCAGCACCGT CAGGTTGCCG ATCCAAGCAC CGGAGAAGCC CAGGGCGACC AGTACTAGCG GCCCCAGGCA GCAGGTCGAT GCAAGAATGG 11400
CGGCCAGCCC GCCGGCGAAG AGCGCACCGC GCCCGTTTTG TGGTTCAGAC ATACGTTGGC CCTTTTGAAT TTGGATTGGA TAGCGTAACC TTACTTCCGT 11500
ACTCATGTAC GGAGTCAAGC GATATGGAAA ATAATTTGGA AAACCTGACC ATTGGCGTTT TTGCCAAGGC GGCCGGGGTC AACGTGGAGA CAATCCGCTT 11600
CTATCAGCGC AAGGGCCTGT TGCCGGAACC GGACAAGCCT TACGGCAGCA TCCGCCGCTA TGGGGAGGCG GACGTGGTTC GGGTGAAATT CGTGAAATCG 11700
GCACAGCGGC TGGGGTTCAG TCTGGACGAG ATTGCCGAGC TGTTGCGGCT CGACGATGGC ACCCACTGCG AGGAGGCCAG CAGCCTGGCC GAGCACAAGC 11800
TCAAGGACGT GCGCGAGAGG ATGGCTGACC TGGCGCGCAT GGAGGCCGTG CTGTCTGATT TGGTGTGCGC CTGCCATGCG CGGAAGGGGA ACGTTTCCTG 11900
CCCGCTGATT GCGTCACTGC AAGGGAAGAA AGAACCGCGC AGTGCGGACG CGGTGTAGCC CGAGGGAACT ACGCCTTAGC GTGCTTTATT TTCCGTTTTC 12000
TGAGGCGACT CCAACGTCAG AAAAGACCGT GCGGTCGACT TTTGATATTT CGTGCTGTCG CCTTCTGAAA GTGACA

 Recombination Sites     

Name Coordinates Gene Sequence
r5 3875-3888 14 AATTTCTGTC ACAT
r3 3931-3944 14 GGGTTAAGTG ACAA
res 3975-4004 30 CTGTCACATA ATCGAACGTA TATGTGACAG
r2 3975-3988 14 CTGTCACATA ATCG
r1 3991-4004 14 CGTATATGTG ACAG

 ORFs     
ORF Summary
Gene Name Associated TE Coordinates Class Sub Class Orientation
tniA Tn50580 144-1826 Transposase   +
tniB Tn50580 1829-2737 Accessory Gene   +
tniQ Tn50580 2734-3951 Accessory Gene Target Site Selection +
tniR Tn50580 4012-4626 Accessory Gene Resolvase +
merE; urf-1 Tn50580 4679-4915 Passenger Gene Heavy Metal Resistance -
merD1 Tn50580 4912-5373 Passenger Gene Heavy Metal Resistance -
merB2 Tn50580 5389-6027 Passenger Gene Heavy Metal Resistance -
merR Tn50580 6096-6530 Passenger Gene Heavy Metal Resistance +
WP_048976769.1 Tn50580 6630-7073 Passenger Gene Hypothetical +
merD2 Tn50580 7164-7511 Passenger Gene Heavy Metal Resistance -
merB1 Tn50580 7508-8146 Passenger Gene Heavy Metal Resistance -
merG Tn50580 8227-8880 Passenger Gene Heavy Metal Resistance -
merA Tn50580 8916-10625 Passenger Gene Heavy Metal Resistance -
merP Tn50580 10813-11088 Passenger Gene Heavy Metal Resistance -
merT Tn50580 11102-11452 Passenger Gene Heavy Metal Resistance -
merR1 Tn50580 11524-11958 Passenger Gene Heavy Metal Resistance +

ORF Details
Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniA TniA Tn50580 1683 144-1826 +
Class:   Transposase
Transpoase Chemistry:   DDE
Comment:   homologous to TnsB of Tn7
Protein Sequence:  
MASDTSLIAE QGVATLPDAA WAQARQRAEI IGPLAALDVV GHEAADAAAH ALGLSRRQVY VLIRRARQGA GLVTDLARSR SGGGKGKGRL PESVERIIRE
LLQKRFLTKQ KRSLAAFHRE VAQACKAQKL RAPARNTVAL RIAGLDPLKA TRRREGQDAS RSLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDERDRQPI
GRPYLTIAID VFTRCVLGMV VTLEAPSSVS VGLCLVHVAC DKRPWLEGLN IEMEWPMSGK PRLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WAEAIARTGV PTVITRTTAF LVDFLPIIRR
TLTRTGFVID HIHYYADALK PWIARRDRLP AFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALAKLR QQGREQVDES ALFRMIGQMR
EIVSTAQKAT RKARRDADRR QHLKATAVLF KTTPPPDADM ADPQADNQPP AKPFDQIEEW

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniB TniB Tn50580 909 1829-2737 +
Class:   Accessory Gene
Transpoase Chemistry:   Serine
Comment:   homologous to TnsC protein of Tn7 putative ATP-binding protein
Protein Sequence:  
MEEYPIIDLS HLMPVAQGLA RLPADERIHR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLVGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSSIAT LDMARYLLTR SEGTIGELAH LLMAAAVAAV ESGEEAINHR TLSMADYTGP SERRRQFERE
LM

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniQ TniQ Tn50580 1218 2734-3951 +
Class:   Accessory Gene
Sub Class:   Target Site Selection
Function:   putative transposition gene
Comment:   similar function to Tn7 tnsD?
Protein Sequence:  
MKPAPHWPLH PAPREGEALS SWLNRVALCY HMEVSELLEH DLGHGQVDDL DTAPPLALLA MLSQRSGIEP DRLRCMSFAG WVPWLLDSLD DQIPDALETY
AFQLSVLLPK LRRRTRSITS WRAWLPSQPI HRACPLCLND PENQAVLLAW KLPLMLSCPL HGCWLESYWG VPGRFLGWEN ADAEPRTASD AIAAMDQRTW
QALTTGHVEL PRRRIHAGLW FRLLRTLLDE LNTPLSTCGT YAGYLRQIWE CCGHPLRAGQ SLWRPYETLN PAVRLQMLEA AATAISLIEV RDISPPGEHA
KLFWSEPQTG FTSGLPAKAP KPEPVDHWQR AIQAIDEAII EARHNPETAR SLFALASYGR RDPASLEQLR ATFAKEGIPP EFLSHYEPSL PFACLRQNDG
LSDKF

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniR TniR Tn50580 615 4012-4626 +
Class:   Accessory Gene
Sub Class:   Resolvase
Function:   putative resolvase
Transpoase Chemistry:   Serine
Sequence Family:  Serine Site-Specific Recombinase
Comment:   resolution of cointegrates || Protein: ACE81792.1
Protein Sequence:  
MLIGYMRVSK ADGSQATDLQ RDALVAAGVD PAHLYEDQAS GKREDRPGLA SCLKALRPGD TLVVWKLDRL GRDLRHLINT VHDLTGRGIG LKVLTGHGAA
IDTTTAAGKL VFGIFAALAE FERELIAERT VAGLASARAR GRKGGRPFKM TAAKLRLAMA AMGQPETKVG DLCQELGVTR QTLYRHVSPK GELRPDGEKL
LSRI

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merE; urf-1 MerE Tn50580 237 4679-4915 -
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Target:   Mercury
Comment:   Broad-spectrum mercury transporter
Protein Sequence:  
MNSPERMPAE THKPITGYLW GALAVLTCPC HLPILAIVLA GTTAGAFIGE YWGIAALTLT GLFVLSVTRL LRAFKDRS

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merD1 MerD1 Tn50580 462 4912-5373 -
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Target:   Mercury
Protein Sequence:  
MFYGTGIGFA ARGLNSAKRY MHCREPTKRR CSMNAYTVSR LALDAGVSVH IVRDYLLRGL LRPVACTTGG YGLFDDAALQ RLCFVRAAFE AGIGLGALAR
LCRALDAANC DETAAQLAVL RQFVERRREA LANLEVQLAA MPTAPAQHAE SLP

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merB2 MerB2 Tn50580 639 5389-6027 -
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Transpoase Chemistry:   merB1 (Tn5058) Chemistry
Target:   Mercury
Comment:   organomercurial lyase
Protein Sequence:  
MKLAPYILER LTPTNRPKGF AEFLVALLGE LAKGRPISRT TLARTLGWPA EQVAAVLEQA TSTEYDNDGN IIGYVLTLRE TSHVLEIDNR RLYAWCALDT
LMLPALIGRT ARVSSHCAAT GAPVSLTVSP SEIQAVEPAG MAVSLVLPQE AADVRQSFCC HVHFFASVPT AEDWASKHQG LEGLAIVSVH EAFGLGQEFN
RHLLQTMSSR TP

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merR MerR Tn50580 435 6096-6530 +
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Function:   putative regulatory gene mercury resistance
Target:   Mercury
Protein Sequence:  
MENNLENLTI GVFAKAAGVN VETIRFYQRK GLLPEPDKPY GSIRRYGAAD VTRVRFVKSA QRLGFSLDEI AELLRLDDGT HCEEASSLAE HKLQDVREKM
ADLARMEAVL SDLVCACHSR QGNVSCPLIA SLQGGTSLAG ASTA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
WP_048976769.1 WP_048976769.1 Tn50580 444 6630-7073 +
Class:   Passenger Gene
Sub Class:   Hypothetical
Protein Sequence:  
MKDQIQDLQN RLIQAESRAS ELIDTNAQLQ RQTHELEQAN AMHKSTLDRQ VADIQNLEHQ LNDASAKNRE RKHESKQLAD NIAALASQKA DADKQVAVLS
QALEVTKTDL KASQNRAEVL SDENKLILQE KAVIQGQFKQ LQESLSR

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merD2 MerD2 Tn50580 348 7164-7511 -
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Target:   Mercury
Protein Sequence:  
MNAYSISKLA DDACVSVHVV RDYMIRGLLH PARRTESG*N IFDDKTLGRL RFLRAAFESG IGLDELARLC KALDADDSES LDRCVERVRW KIDVRRTVLT
VVEASLNEMA AGAAT

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merB1 MerB1 Tn50580 639 7508-8146 -
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Transpoase Chemistry:   merB1 (Tn5058) Chemistry
Target:   Mercury
Comment:   organomercurial lyase
Protein Sequence:  
MDKTIYSKKI AESLSSGNHP KEFATLFVAL LRQLAMGGPV SREKLAGALG WSGARVATVL EQAPGTEYDD EANIIGLGLT LRETSHVFEV DGRHLYTWCA
LDTLMFPALT GKIARVTSRC AATGRPITLT VAPEAVLHVE PAEAMVSLRT PDTSPDIRCS FCCHVHFFAS PSIANSWAST HQGIEVVPVE SAFDLGHDVA
LKLLEDCEES PV

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merG MerG Tn50580 654 8227-8880 -
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Target:   Mercury
Protein Sequence:  
MFCDIRLKLR RVRACLTIVL ASTATLGMPN QALAAYDFSK LGAAIETLSP ETVSDWEKKA RAGDAMAQNI MGLAYKCGMG VKQNHAASIQ WFRRAAEQGE
ADAQFNLGRL YGSEVDGMYK NGRAAPANDA EAFKWYRLAA EQGHTQAQVR LAQLFAKGLT DIAPDQVQAY QWMSLAAASG EPTAAKVVAD YAAQMKPEQL
QQAQLLAEEW QRRQGTK

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merA MerA Tn50580 1710 8916-10625 -
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Target:   Mercury
Protein Sequence:  
MQELNEVGLS VAGMTCPSCT RHVEDALLAV PGVTRAAVDY PSNKAQVTGN RLDVSALVAA VGALGYGATP TDEFESKERS VEQPGLLGKA AQWLSGERAV
EKPAGQLHVA IIGTGGAAVA AALKAAENGA RVTLIERGTI GGTCVNVGCV PSKIMIRAAH IAHLRRESPF DVGLSATPPV VLRDRLLAQQ QARVDELRHA
KYESILESNP SINLVRGSAR FKDGQTLIVE AAEGDTREVA FDRCLIATGA SAAIPPLPGL AGTPYWTSTE ALVSEAIPKR LAVIGASVVA LELAQAFARL
GSEVTVLARR TLFASDDPAI GEAVTAAFRA EGITVLTQTQ ASAVTYCDRQ FILTTAQGEL KVDQLLVATG RTPNTASLNL ERAGVTFDSQ HRILIDQGMR
TSASNIYAAG DCTDQPQYVY VAAAAGTRAG INMTGGDVKL DLDAMPAVVF TDPQVATVGY SEAEAQRIGL QTESRTLTLD NVPRALANFD TRGFIKLVAE
AGSGRILGVQ AVTPEAGEII QTAAIAIRAR MTVQDLANQL FPYLTMVEGL KLVAQTFSKD VTQLSCCAG

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merP MerP Tn50580 276 10813-11088 -
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Target:   Mercury
Comment:   periplasmic mercuric ion binding protein
Protein Sequence:  
MKKLFASLAL AAAVAPVWAA TQTVTLAVPG MTCATCPITI KKALSKVDGV SKTEVDFSTK LAVVTFDDAK TNVQALSKAT TDVGYPSELK K

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merT MerT Tn50580 351 11102-11452 -
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Function:   cytosolic mercuric ion transport protein
Target:   Mercury
Protein Sequence:  
MSEPQNGRGA LFAGGLAAIL ASTCCLGPLV LVALGFSGAW IGNLTVLEPY RPLFIGAALV ALFFAWKRIY RPVQACKPGE VCAIPQVRAT YKLIFWIVAV
LVLVALGFPY VVPFFY

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
merR1 MerR1 Tn50580 435 11524-11958 +
Class:   Passenger Gene
Sub Class:   Heavy Metal Resistance
Function:   activator
Target:   Mercury
Protein Sequence:  
MENNLENLTI GVFAKAAGVN VETIRFYQRK GLLPEPDKPY GSIRRYGEAD VVRVKFVKSA QRLGFSLDEI AELLRLDDGT HCEEASSLAE HKLKDVRERM
ADLARMEAVL SDLVCACHAR KGNVSCPLIA SLQGKKEPRS ADAV

 Internal Repeat Elements     

Name Associated Mobile Element Coordinates Sequence (Top Strand)
repeat t1 Tn50580 9-27 TCAGAAGACG ACCGCACCA
repeat t2 Tn50580 49-67 CACACGTATG CCGAGGACT
repeat t3 Tn50580 78-96 TCAGGAGTCG TCTGCACCA
repeat t4 Tn50580 110-128 TCAATACTCG TGTGCACCA
IRL Tn21 6526-6563 GAATCGCACG AAATAAAAGG CAAAAGACTC CACGGGGG
repeat i4 Tn50580 6536-6554 AAATAAAAGG CAAAAGACT
IR Tn21-like Tn5053 11975-12012 GAATCGCACG AAATAAAAGG CAAAAGACTC CGCTGAGG
repeat i4 Tn50580 11985-12003 AAATAAAAGG CAAAAGACT
repeat i2 Tn50580 12027-12045 CCGTGCGGTC GACTTTTGA
IRi Tn50580 12049-12076 AAGCACGACA GCGGAAGACT TTCACTGT

 References     

Smalla K, Haines AS, Jones K, Krögerrecklenfort E, Heuer H, Schloter M, Thomas CM. Increased abundance of IncP-1beta plasmids and mercury resistance genes in mercury-polluted river sediments: first discovery of IncP-1beta plasmids with a complex mer transposon as the sole accessory element. Appl Environ Microbiol. 2006 Nov;72(11):7253-9. doi: 10.1128/AEM.00922-06. Epub 2006 Sep 15. PubMed ID: 16980416