 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Internal Transposable Elements | |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Name: Tn5053.6 |
|
| Family: Tn402 Group: Tn5053 |
|
| Evidence of Transposition: Yes |
|
|
|
| Host |
 |
|
| Host Organism: | Uncultured bacterium | Molecular Source: | plasmid pWEC911 |
| | Date of Isolation: | 2013 |
|
| Map |
|
| Terminal Inverted Repeats (IR) |
|
| Sequence |
|
|
|
|
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAATT GACGGGGCGT AACGCCAGGT GTGCAGTCGG CTCCTGACCA CGCAATATCA GAAGTCATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGTG AGCATGGCGT CAGACACATT ACCAATTGCC GAGCAGGGCG TGGCCACCCT GCCCGATGCG 200
GCATGGGCAC AGGCCCGGCA CCGGACCGAA ATCATCGGGC CGCTGGCAGC GCTTGAAGTG GTTGGGCATG AAGCCGCCGA TGCCGCTGCT CAAGCGCTGG 300
GCCTATCCAG GCGGCAGGTG TATGTCCTGA TCCGGCGTGC CCGGCAAGGT GCTGGGTTTG TGACGGACCT GGTTCCCGGC CAGTCCGGCG GCGGAAAAGG 400
CAAGGGACGC TTGCCGGAAT CAGTTGAGCG CATCATCCGC GAGTTGCTGC AAAAGCGCTT CCTGACCAAG CAGAAGCGTA GCCTGGCGGC GTTCCACCGC 500
GAGGTCGCGC AGGCTTGCAA AGCGCAAAAG CTACGGGTGC CGGCGCGCAA CACTTTGGCC CTGCGGATCG CCGGCCTCGA CCCGCTCAAG GCCACTCGCC 600
GCCGGGAAGG TCAGGATGCG TCCCGCAGCC TGCAAGGTGT CGGTGGTGAG CCTCCCGCCG TGACCGCGCC ACTGGAACAA GTGCAGATTG ATCACACGGT 700
CATCGACCTG ATCGTGGTGG ACGAGCGCGA CCGGCAACCG ATTGGCCGTC CGTATCTGAC CATCGCCATC GACGTGTTTA CCCGCTGCGT GCTCGGCATG 800
GTCGTCACGC TGGAAGCGCC GTCATCTGTT TCGGTCGGCC TGTGCCTTGT GCATGTCGCC TGCGACAAGC GTCCCTGGCT GGAGGGTCTG AATATAGAAA 900
TGGATTGGCC GATGAGCGGC AAGCCCAGGC TGCTCTACTT GGACAACGCG GCCGAGTTCA AGAGCGAGGC GCTGCGCCGT GGCTGCGAGC AGCACGGCAT 1000
CCGGTTGGAC TATCGTCCGC CAGGGCAGCC GCACTACGGC GGCATCGTGG AACGGATCAT CGGTACGGCG ATGCAGATGA TCCACGATGA ATTGCCAGGG 1100
ACGACCTTCT CCAACCCTGA CCAGCGCGGG GACTACGATT CCGAAAACAA GGCCGCCCTG ACATTGCGTG AGCTGGAGCG CTGGCTCACG TTGGCGGTGG 1200
GCACCTATCA CGGCTCTGTG CACAACGGCC TGCTTCAGCC GCCGGCGGCG CGCTGGTCAG AAGCCGTGGC GCGTGTCGGT GTACCGGCTG TCGTCACCCG 1300
CGCCTTGGCT TTTTTGGTCG ATTTCCTGCC CATCATTCGC CGTACTCTGA CTCGCACCGG CTTTGTCATC GACCACATTC ACTACTACGC CGATGCGCTC 1400
AAACCGTGGA TCGCACGACG CGACCGCTTG CCCGCTTTCC TGATCCGGCG CGACCCGCGT GACATCAGCC GTATCTGGGT GCTGGAACCG GAGGGGCAGC 1500
ATTACCTGGA AATCCCCTAC CGTACCTTGT CGCACCCGGC TGTCACCCTC TGGGAACAAC GGCAGGCGCT GACGAAATTG CGGCAGCAGG GACGCGAACA 1600
GGTGGATGAG TCGGCGCTGT TCCGCATGAT CGGGCAGATG CGCGAGATCG TGACCACCGC ACAGAAGGCC ACGCGCAAGG CGCGGCGCGA CGCGGATCGA 1700
CGCCAGCACC TCAAGGCATC GCCTCCGCCG GACAAGCCGA TTCCGCCGAA AACGGACGTT GCTGATCCGC AGGCAGACAA CCTGCCTCCG GCCAAACCGT 1800
TCGACCAGAT CGAGGAGTGG TAGCCGTGGA CGAATATCCC ATCATCGACT TGTCACACCT GCTGCCAGCG GCACAGGGGC TGGCTCGGCT GCCGGCGGAC 1900
GAGCGCATCC AGCGCCTTCG CGCCGACCGC TGGATCGGCT ACCCGCGCGC GGTCGAGGCG CTGAACCGGC TGGAAACCCT GTATGCGTGG CCAAACAAGC 2000
AACGCATGCC CAACCTGCTG CTGGTTGGCC CGACCAACAA CGGCAAGTCG ATGATCATCG AGAAATTCCG GCGCACGCAT CCGGCCAGCT CCGACGCGGA 2100
CCAGGAACAC ATGCCGGTGC TGGTCGTGCA GATGCCGTCC GAACCGTCGG TGATCCGCTT CTACGTCGCG CTACTTGCCG CGATGGGGGC ACCATTGCGC 2200
CCGCGCCCAC GGCTGCCGGA AATGGAGCAA CTGGCGCTGG CACTGCTGCG CAAGGTCGGC GTGCGCATGC TGGTGATCGA CGAGCTGCAC AACGTCTTGG 2300
CCGGCAACAG CGTCAACCGG CGGGAATTTC TCAACCTGCT GCGCTTCCTC GGCAATGAGC TGCGCATCCC ATTGGTCGGG GTCGGCACGC GCGACGCCTA 2400
CCTGGCCATC CGCTCGGATG ACCAATTGGA AAACCGCTTC GAGCCCATGA TGCTGCCGGT GTGGGAGGCC AACGACGATT GCTGCTCACT GCTGGCCAGC 2500
TTCGCCGCTT CGCTTCCATT GCGGCGACCC TCGTCGATTG CCACGCTGGA CATGGCCCGC TACCTGCTCA CACGCAGCGA GGGCACCATC GGCGAACTGG 2600
CGCACTTGCT GATGGCGGCG GCCCTCGTCG CCGTGGAGAG CGGCGAGGAA GCGATCAACC ACCGCACGCT CAGCATGGCC GATTACACCG GCCCAAGCGA 2700
GCGGCGTCGG CAATTCGAGC GGGAACTGAT GTGAAGCCAG CGCCACGCTG GCCACTGCAT CCGGCACCCA GGGAAGCCGA AGCCCTGTCT TCGTGGCTCA 2800
ACCGCGTGGC CCTTTGCTAT CACATGGAAG TGTCCGAGCT GCTGGAGCAC GATCTTGGTC ACGGCCAGGT TGATGACCTG GACACCGCGC CACCACTGGC 2900
GCTGCTGGCG ATGCTCTCCC AGCGGAGCGG TATCGAGCTG GATCGGCTGC GCTGCATGAG TTTCGCCGGC TGGGTGCCTT GGCTACTGGA CAGCCTTGAT 3000
GATCAGATTC CAGCCGCATT GGAAACCTAT GCGTTCCAGC TCTCGGTACT GCTGCCGAGA CTCCGCCGTA AGACGCGATC CATCACGAGC TGGCGTGCCT 3100
GGCTGCCCAC CCAACCGATA CACCGCGCCT GTCCGCTCTG CCTGAACGAT CCGGAGAACC AAGCCGTACT GCTCGCGTGG AAGCTGCCCC TGATGCTGAG 3200
CTGCCCACTG CATGGCTGCT GGCTGGAATC CTATTGGGGC GTGCCAGGGC GGTTTCTCGG CTGGGAGAAC GCCGACGCCG AACCGCGCAC TGCCAGCGAC 3300
GCGATTGCGG CGATGGACCA GCGTACCTGG CAGGCACTGA CGACCGGCCA CGTGGAGTTG CCGCGCCGAC GCATCCACGC CGGATTGTGG TTTAGGCTGC 3400
TACGCACGCT GCTCGATGAG CTGAACACCC CGCTTTCGAC GTGCGGCACC TACGCGGGGT ATCTCCGCCA AATCTGGGAA TGCTGCGGGC ATCCGCTGCG 3500
TGCTGGGCAA AGTCTGTGGC GACCGTATGA AACCCTGAAC CCGGCAGTAC GGTTGCAGAT GCTGGAGGCG GCGGCAACGG CAATCAGCTT GATTGAGGTG 3600
AGGGATATAA GCCCGCCAGG CGAGCACGCA AAGCTATTCT GGTCCGAGCC CCAAACCGGG TTCACCAGTG GCCTGCCGGC GAAAGCGCCG AAGCCCGAAC 3700
CCGTCGATCA CTGGCAGCGT GCAATCCAGG CCATTGATGA GGCCATCATT GAAGCACGAC ACAACCCCGA GACGGCACGC TCGCTGTTCG CGTTGGCTTC 3800
CTATGGTCGG CGCGACCCCG CTTCCTTGGA ACAGTTGCGC GCCGCCTTCG CGAAGGAAGG CATCCCCCCG GAATTTCTGT CACATTATGA GCCTAGCCTA 3900
CCCTTTGCAT GCCTTAGACA GAATGACGGG TTAAGTGACA AATTTTGACG TGCAGAGCTT CCCGATGCAA ACTGTCACAT AATCGAACGT ATATGTGACA 4000
GGTACAAGAT GCTGATTGGC TACATGCGAG TATCGAAGGC GGATGGCTCC CAGGCGACGG ACTTGCAGCG CGATGCGCTG GTCGCGGCCG GTGTTGATCC 4100
GGCGCATCTC TATGAAGACC AAGCGTCCGG AAAACGCGAG GATCGTCCCG GTCTGGCGAG CTGTCTGAAG GCACTACGGT CAGGCGACAC GTTGGTCGTT 4200
TGGAAACTGG ATCGGCTCGG GCGCGACCTG CGCCATCTGA TCAATACCGT CCATGACCTG ACCGGACGCG GCATCGGCCT CAAGGTGCTG ACCGGGCACG 4300
GCGCGGCCAT TGACACCACG ACCGCCGCCG GCAAGCTGGT CTTCGGTATC TTCGCCGCGC TGGCCGAGTT CGAGCGCGAG TTGATCGCCG AGCGCACCGT 4400
GGCGGGCCTG GCCTCAGCAC GGGCACGCGG CCGGAAAGGC GGCCGGCCGT TCAAGATGAC CGCCGCCAAG CTGCGGCTGG CGATGGCGGC AATGGGGCAG 4500
TCAGAGACCA AGGTCGGCGA CCTGTGCCAG GAACTTGGCA TCACGCGGCA GACCCTGTAT CGGCATATTT CACCCAAGGG CGAGCTACGT CCAGATGGCG 4600
AGAAGCTACT CAGCCGAATT TGATGCCGAC ATGAGGCGAC GTAGCGAAAG CGTGGTTTGT CTCAATTTGA CGGCGGCGAA CCGCAAGCGT TCGGTTCGCC 4700
GCTCGTTTCG GTCGCAGTGC TGGCCCGCGC CTGGAAACGT TGATAACACT CCAGCCCGCA GAAGTGCTCG ACGTACTCCG CGCCTTCCGG TGTGAAGGCG 4800
GCATCGAGCG GAATTTCCTT GCAGCACACG CAGCAACTGG TGGCGGTCGG ATCATTTGCA TTCATGGTGG CACCCCTCCA TTGACTGACG AAGACGGCGA 4900
ATGCCGCCGC CGGCATCGGC TTTGCGAACA GAAAGCCTTG CCCGCGCTCG AACGCTTGGG CCCTCCGCCG TAGTCCATCC ATCCGGCCGG GAAGCGCTCA 5000
TGATCTTTCC CTGAATGCCC GCAACGCCCG CGCCAGTGAC AGAAGAAACA GGCCGGTCAA ACCGAGCGCC GTGATGACCC AATACTCGAC AAGGAATGCA 5100
CCGGCGGTTG TGCCGGCCAG CACGGCAGCG AGGATGGACA GGTGGCAGGG GCAAGTCAGC ACGGCCAGCG TGCCCCACAG GTAGCCGGTG AACGGTTTGT 5200
GCGTCTCGGC CGGCATGCGC TCGGGGCTGT TCATGGCAAA CTCTCCGCAT GCTGTGCCGG CGCGGTCGGC ATGGCGGCCA ACTGCACTTC CAGATTGGCC 5300
AACGCTTCGC GCCGGCGTTC GACGAACTGA CGCAGCACAG CAAGCTGCGC GGCAGTTTCA TCGCAGTTCG CCGCATCCAG CGCCCGGCAC AGCCGCGCCA 5400
ATGCGCCGAG GCCGATGCCC GCCTCGAAGG CGGCCCGCAC GAAGCACAGT CGCTGCAAGG CGGCGTCATC GAACAGGCCG TAGCCACCCG TGGTGCAGGC 5500
GACTGGCCGC AGCAATCCGC GCAGCAGGTA GTCGCGCACG ATATGCACGC TCACCCCGGC ATCAAGGGCC AGCCGGGACA CCGTGTAGGC GTTCATCGAA 5600
CACCTCCTTT TGGTCGGTTC ACGGCAATGC ATATACCGTT TCGCCGAGTT CAATCCGCGC GCTGCGAATC CGATGCCGGT GCCGTAGAAC ATTGGGTCGA 5700
TATCCGATCA CGGTGTCCTA GATGACATGG TCTGCAACAG ATGTCGATTA AACTCCTGGC CCAAGCCGAA AGCCTCGTGG ACACTGACGA TCGCCAATCC 5800
TTCCAATCCT TGATGCTTGG AGGCCCAGTC TTCCGCCGTC GGGACAGATG CAAAGAAATG TACATGGCAA CAGAAGGACT GACGAACGTC GGCTGCTTCC 5900
TGCGGCAATA CCAAGGACAC CGCCATGCCG GCAGGTTCGA CAGCCTGTAT CTCGCTGGGT GAAACCGTGA GTGAAACGGG TGCTCCGGTT GCAGCGCAAT 6000
GCGATGAGAC GCGAGCTGTA CGGCCGATCA GCGCCGGAAA TATCAAGGTG TCCAGCGCGC ACCAGGCATA CAGACGGCGG TCGTCAATTT CAAAGACATA 6100
CGAAGTCTCG CGCAAGGTGA GGCCGTAGCC GATGATGTTC CCATCTTTGT CATATTCGGT ACTGGTGGCC TGTTCGAGTA CGGCGGCCAC TCGCTCAGCG 6200
GGCCAGTCGA GAATCCCGGC AAGTGTCGTT CGTGAAACCG GACGCCCCTT GGCGAGTTCC CGCAGTAGCG GGACCAAGAG ATCCGCAGTA CCATTGGTAC 6300
GATTGACCGA AGTGAGACGT TCTAAAATAT ATGGGGCGAG CTTCATGGTT CCATCTCCTT TCATCCTGCG CAGCAGGACA ATTGTTTGAC ATCCTTGGTG 6400
AAGGTCTGCG CCGCGAGCTT CAGCCCCTCG ACCATCGTCA GGTAGGGGAA CAACTGGTCA GCCAGTTCCT GTACGGTCAT GCGGTTACGG ATCGCGAGCA 6500
CCGCCGTCTG GATCAGCTCG CCCGCTTCCG GGGCCACTGC CTGTACCCCA ATGAGTCGTC CGCTACCTTC CTCGGCTTGT CCTTTCGAAT TTGAATTGGA 6600
TAGCGTAACC TTACTTCCGT ACTCATGTAC GGAGTCAAGC GGTATGGAAA ATAATTTGGA GAACCTGACC ATTGGCGTTT TTGCCAAGGC AGCCGGCGTC 6700
AACGTGGAGA CCATCCGGTT CTATCAGCGC AAGGGCTTGT TGCCCGAGCC GGACAAGCCC TATGGCAGCA TTCGCCGCTA TGGCGCGGCG GACGTGACAC 6800
GGGTGCGCTT TGTGAAGTCG GCCCAGCGGC TGGGCTTCAG CCTGGACGAG ATTGCCGAGC TGTTGCGGCT CGACGATGGC ACCCACTGCG AGGAGGCCAG 6900
CAGCCTGGCC GAACACAAGC TCAAGGACGT GCGCGAGAAG ATGGCCGACT TGGCGCGCAT GGAAACCGTG CTGTCTGAAC TCGTGTGCGC CTGCCATGCA 7000
CGAAAGGGGA ATGTTTCCTG CCCGTTGATC GCGTCACTAC AGGGCGAAGC AGGCCTGGCA AGGTCAGCTA TGCCTTAGCG TGCTTTATTT TCCGTTTTCT 7100
GAGGTGCCCC CTACCAGCAA CGCACCGCCG AAGACCGGCA GCAGGAGCGC GAGCAATTCC AGATGGTTAA CCGGGGCCTG AAAGACCAGA TTCAAGACCT 7200
GCAAAACCGG CTCATCCAAG CCGAGTCAAG AGCGTCCGAG CTGATAGACA CTAATGCGCA ATTACAACGA CAAACGCATG AGCTCGAACA GGCCAATGCG 7300
ATGCACAAAA GCACCTTGGA TAGGCAAGTG GCCGATATCC AGAACTTGGA GCATCAACTT AACGACGCCT CGGCAAAAAA CCGGGAGCGG AAGCATGAAA 7400
GCAAACAATT GGCGGATAAT ATTGCCGCAC TCGCAAGCCA GAAAGCAGAT GCCGATAAGC AGGTGGCCGT ACTATCCCAA GCATTAGAGG TCACCAAAAC 7500
GGATCTGAAA GCCTCTCAGA ATAGAGCGGA AGTTCTGTCC GATGAGAACA AGTTGATTCT TCAGGAAAAA GCGGTGATTC AGGGGCAGTT TAAGCAGCTT 7600
CAGGAGTCAC TGTCGCGATA AAGGCTTTAG TCAAACATTC ATCGAAAAAG CTATATTAAT CAATATATTA TATACGAAGT GGCTAATTCC AACGCTTTTA 7700
CCGGCCGGAC CTCAAGTAGC TGCACCGGCC GCCATTTCAT TCAAAGAGGC CTCGACGACA GTCAAAACTG TTCGACGCAC GTCGATCTTC CATCGCACGC 7800
GCTCGACGCA TCGGTCCAGG CTTTCGCTAT CGTCTGCGTC CAATGCTTTG CAAAGTCGCG CCAGTTCGTC GAGCCCAATT CCGGACTCGA AGGCTGCGCG 7900
GAGAAACCGC AGCCTTCCGA GTGTTTTGTC ATCGAAAATG TTCTAGCCAC TTTCGGTTCG CCGAGCAGGG TGCAACAAGC CGCGTATCAT GTAGTCGCGC 8000
ACGACATGCA CGCTGACGCA AGCATCATCA GCCAGCTTCG ATATCGAGTA CGCATTCATA CTGGGCTTTC CTCGCAGTCC TCTAGCAGCT TAAGCGCGAC 8100
ATCATGACCA AGGTCGAACG CACTCTCGAC AGGCACGACC TCAATCCCTT GGTGGGTCGA AGCCCACGAA TTTGCAATAG ACGGAGACGC AAAGAAATGC 8200
ACATGACAGC AAAACGAACA ACGAATGTCG GGCGAAGTAT CCGGAGTTCG CAGTGAAACC ATTGCTTCTG CCGGTTCGAC ATGAAGCACT GCTTCTGGTG 8300
CAACGGTGAG AGTGATCGGC CTACCGGTGG CGGCGCAGCG GGAAGTGACA CGGGCAATCT TGCCGGTCAA GGCGGGAAAC ATCAAGGTGT CCAGCGCACA 8400
CCATGTGTAC AAATGACGGC CATCCACCTC AAAAACGTGA GAGGTTTCAC GTAGTGTCAG CCCCAGTCCA ATGATATTGG CCTCGTCGTC ATATTCCGTA 8500
CCAGGTGCCT GCTCAAGTAC CGTTGCAACT CTCGCTCCAG ACCATCCGAG TGCGCCGGCG AGCTTTTCGC GTGATACAGG TCCCCCCATC GCTAGCTGTC 8600
GGAGCAGCGC GACAAAGAGC GTTGCGAACT CTTTAGGATG ATTGCCAGAT GAAAGGCTTT CGGCAATCTT TTTGGAATAA ATAGTCTTGT CCATTTTCCA 8700
CCTGTTATAT CGGGCAGCGA TCAACCGGGA TAAACCTTAC TCGGCGGTTA CGTCCTGCGC TTAACAAAGA CGAATTACTT TGTGCCTTGC CGGCGTTGCC 8800
ATTCCTCGGC CAGCAGCTGG GCTTGCTGTA ACTGTTCGGG CTTCATTTGA GCTGCATAGT CTGCAACGAC TTTTGCTGCT GTCGGTTCTC CCGACGCTGC 8900
GGCCAGACTC ATCCACTGGT ATGCCTGCAC CTGGTCGGGC GCGATGTCGG TAAGACCCTT TGCAAACAGC TGGGCCAGCC TGACTTGAGC CTGCGTGTGT 9000
CCCTGCTCGG CAGCGAGGCG GTACCACTTG AAAGCCTCTG CATCGTTGGC AGGAGCCGCA CGCCCATTCT TATACATACC GTCGACTTCA CTTCCGTAGA 9100
GGCGCCCGAG GTTGAACTGT GCATCGGCTT CACCCTGCTC GGCCGCCCTG CGGAACCACT GGATCGATGC CGCGTGGTTT TGCTTTACGC CCATACCGCA 9200
TTTGTACGCA AGACCCATGA TGTTCTGAGC CATGGCATCG CCAGCCCTGG CCTTCTTTTC CCAATCACTG ACGGTCTCTG GCGACAATGT TTCAATCGCG 9300
GCGCCGAGCT TAGAAAAATC ATAAGCCGCC AACGCTTGGT TTGGCATGCC TAACGTTGCG GTACTTGCCA GTACGATCGT CAAGCACGCG CGTACACGGC 9400
GTAATTTAAG TCTGATGTCA CAAAACATAA AAACTCCTCT GTCCCTGTTT TGGTGCCCAA GGTTTAGCCG GCACAGCACG ATAGCTGTGT CACATCCTTC 9500
GAAAAAGTCT GTGCCACCAG TTTGAGACCT TCAACCATGG TGAGGTAAGG GAAAAGCTGG TTAGCCAGAT CCTGGACGGT CATGCGGGCC CGGATGGCAA 9600
TCGCGGCAGT CTGGATGATT TCGCCTGCTT CCGGTGTCAC AGCCTGGACT CCGAGAATGC GTCCGGACCC TGCCTCAGCA ACAAGCTTGA TAAAGCCGCG 9700
GGTATCGAAG TTGGCGAGTG CACGCGGCAC ATTGTCGAGC GTGAGCGTAC GGCTTTCGGT TTGCAGACCA ATGCGCTGGG CCTCTGCTTC ACTGTAGCCT 9800
ACCGTGGCAA CTTGCGGATC GGTGAACACG ACTGCCGGCA TGGCGTCGAG ATCGAGCTTT ACGTCGCCGC CGGTCATATT AATGCCAGCC CGGGTACCAG 9900
CCGCGGCTGC AACGTAGACG TACTGAGGCT GGTCAGTGCA GTCGCCAGCT GCGTAAATGT TCGAAGCACT CGTGCGCATG CCTTGATCGA TCAGGATGCG 10000
ATGTTGCGAG TCAAACGTCA CACCTGCGCG CTCGAGATTC AGGCTTGCGG TATTTGGCGT GCGGCCGGTG GCAACAAGCA ATTGATCCAC CTTTAACTCG 10100
CCCTGCGCGG TCGTCAGGAT GAATTGGCGG TCGCAATAGG TCACGGCACT CGCCTGCGTC TGTGTCAGCA CCGTGATGCC TTCCGCACGG AAAGCTGCAG 10200
TCACGGCCTC GCCAATGGCA GGGTCGTCAC TGGCAAACAA GGTGCGCCGG GCCAGGACCG TCACCTCGCT GCCCAAGCGC GCAAACGCTT GTGCCAGTTC 10300
CAGTGCTACG ACCGAGGCGC CAATTACTGC CAGCCGTTTA GGAATGGCTT CGCTAACCAG GGCTTCGGTG GACGTCCAAT ATGGCGTTCC TGCAAGACCA 10400
GGCAACGGCG GGATGGCAGC GCTTGCACCA GTGGCAATGA GACAGCGATC GAAGGCCACT TCGCGAGTGT CACCTTCTGC CGCTTCCACG ATAAGCGTTT 10500
GGCCATCCTT GAATCGGGCG CTGCCTCGCA CCAGATTGAT CGACGGATTG CTTTCGAGGA TGCTTTCATA TTTAGCATGA CGCAGCTCGT CCACACGGGC 10600
CTGCTGTTGC GCCAGCAGAC GGTCACGCAG GACAACTGGG GGCGTTGCCG ACAGTCCCAC GTCAAAAGGA CTTTCGCGTC GCAGATGAGC GATATGCGCT 10700
GCCCGAATCA TGATCTTAGA AGGGACGCAG CCCACGTTGA CGCAGGTGCC GCCGATAGTT CCCCGCTCGA TCAGGGTGAC ACGGGCACCG TTTTCAGCTG 10800
CCTTCAGCGC TGCTGCCACA GCGGCGCCGC CAGTACCGAT GATCGCCACA TGCAGCTGAC CTGCCGGTTT CTCCACCGCG CGCTCGCCGC TCAGCCACTG 10900
GGCGGCTTTG CCAAGGAGTC CTGGCTGTTC AACACTGCGC TCTTTGCTTT CAAATTCGTC TGTAGGCGTA GCACCGTAAC CAAGGGCGCC CACTGCTGCT 11000
ACGAGCGCGG ACACGTCAAG CCTATTGCCT GTGACTTGCG CCTTGTTCGA TGGATAATCG ACAGCCGCTC GCGTTACGCC GGGGACCGCC AGCAGCGCGT 11100
CCTCAACGTG CCTTGTACAA CTTGGGCAAG TCATTCCCGC CACGCTCAAA CCAACTTCGT TTAACTCTTG CATTCCGCTC TCTCTTTTAT CCGTTGTGCC 11200
CAAGCCAACT AGTACGACGC CTCGGTCACT GAATCGGTTG TGCGCTTCAG GGAACAGGCT CCGTGGGTCG TTTACAGGCT GCTCACGCGA TGACGACCGG 11300
CAGAATCGCC TGAGCGGCAT CTCTGCCGTG GTTCTAGCGA TGCTGCCGTT ATTTGTTGCC TTACTTCTTC AGCTCAGATG GGTAGCCTAC ATCCGTCGTC 11400
GCCTTGCTAA GCGCCTGGAC GTTGGTCTTC GCATCGTCAA ACGTTACGAC GGCAAGCTTG GTTGAGAAGT CGACCTCGGT CTTGCTAACA CCGTCGACCT 11500
TGCTCAAGGC CTTTTTAATG GTGATAGGAC AAGTCGCGCA GGTCATGCCA GGAACGGCCA AGGTGACCGT CTGCGTGGCG GCCCACACCG GGGCAACAGC 11600
GGCGGCGAGG GCAAGGGAGG CAAACAGTTT CTTCATGATG AACTCCTGGT TAATAGAAAA ATGGAACGAC ATAGGGAAAT CCAAGCGCGA CCAGGACCAG 11700
CACGGCCACG ATCCAGAAAA TCAGCTTGTA GGTGGCGCGC ACCTGCGGAA TCGCGCAGAC CTCACCTGGC TTGCATGCCT GCACGGGCCG GTAAATCCGC 11800
TTCCAGGCGA AGAACAGCGC CACTAGCGCC GCGCCGATGA ACAACGGTCG ATAGGGTTCC AGCACCGTCA GGTTGCCGAT CCAAGCACCG GAGAAGCCCA 11900
GGGCGACCAG TACTAGCGGC CCCAGGCAGC AGGTCGATGC AAGAATGGCG GCCAGCCCGC CGGCGAAGAG CGCACCGCGC CCGTTTTGTG GTTCAGACAT 12000
ACGTTGGCCC TTTTGAATTT GGATTGGATA GCGTAACCTT ACTTCCGTAC TCATGTACGG AGTCAAGCGA TATGGAAAAT AATTTGGAAA ACCTGACCAT 12100
TGGCGTTTTT GCCAAGGCGG CCGGGGTCAA CGTGGAGACA ATCCGCTTCT ATCAGCGCAA GGGCCTGTTG CCGGAACCGG ACAAGCCTTA CGGCAGCATC 12200
CGCCGCTATG GGGAGGCGGA CGTGGTTCGG GTGAAATTCG TGAAATCGGC ACAGCGGCTG GGGTTCAGTC TGGACGAGAT TGCCGAGCTG TTGCGGCTCG 12300
ACGATGGCAC CCACTGCGAG GAGGCCAGCA GCCTGGCCGA ACACAAGCTC AAGGACGTGC GCGAGAAGAT GGCCGACTTG GCGCGCATGG AAACCGTGCT 12400
GTCTGAACTC GTGTGCGCCT GCCATTCGCG GCAGGGGAAT GTTTCGTGTC CGCTGATTGC GTCGTTGCAA GGTGGAACGA GCTTGGCAGG GGCTTCCACA 12500
GCTTAGCGTG CTTTATTTTC CGTTTTCTGA GACGACCACA GATCAGAAAA GACTGTGCAG CCGACTCTTG ATATTCCGTG CAGTCACCTT CTGAAAATGA 12600
CA
|
|
|
|
| Recombination Sites |
|
|
| Name |
Coordinates |
Gene |
Sequence |
| repeat t3 |
78-97 |
20 |
TCAGAAGTCA TCTGCACCAA |
| r5 |
3872-3885 |
14 |
AATTTCTGTC ACAT |
| r3 |
3928-3941 |
14 |
GGGTTAAGTG ACAA |
| res |
3972-4001 |
30 |
CTGTCACATA ATCGAACGTA TATGTGACAG |
| r2 |
3972-3985 |
14 |
CTGTCACATA ATCG |
| r1 |
3988-4001 |
14 |
CGTATATGTG ACAG |
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tniA |
Tn5053.6 |
144-1823 |
Transposase |
|
+ |
| tniB |
Tn5053.6 |
1826-2734 |
Accessory Gene |
|
+ |
| tniQ |
Tn5053.6 |
2731-3948 |
Accessory Gene |
Target Site Selection |
+ |
| tniR |
Tn5053.6 |
4009-4623 |
Accessory Gene |
Resolvase |
+ |
| tniM |
Tn5053.6 |
4662-4982 |
Passenger Gene |
Hypothetical |
- |
| merE |
Tn5053.6 |
4998-5234 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merD |
Tn5053.6 |
5231-5692 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merB |
Tn5053.6 |
5708-6346 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merA_p |
Tn5053.6 |
6361-6687 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merD1 |
Tn5053.6 |
7712-8059 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merB1 |
Tn5053.6 |
8056-8694 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merG |
Tn5053.6 |
8775-9428 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merA |
Tn5053.6 |
9464-11173 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merP |
Tn5053.6 |
11361-11636 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merT |
Tn5053.6 |
11650-12000 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merR1 |
Tn5053.6 |
12072-12506 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniA |
TniA |
Tn5053.6 |
1680 |
144-1823 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MASDTLPIAE QGVATLPDAA WAQARHRTEI IGPLAALEVV GHEAADAAAQ ALGLSRRQVY VLIRRARQGA GFVTDLVPGQ SGGGKGKGRL PESVERIIRE
LLQKRFLTKQ KRSLAAFHRE VAQACKAQKL RVPARNTLAL RIAGLDPLKA TRRREGQDAS RSLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDERDRQPI
GRPYLTIAID VFTRCVLGMV VTLEAPSSVS VGLCLVHVAC DKRPWLEGLN IEMDWPMSGK PRLLYLDNAA EFKSEALRRG CEQHGIRLDY RPPGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WSEAVARVGV PAVVTRALAF LVDFLPIIRR
TLTRTGFVID HIHYYADALK PWIARRDRLP AFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALTKLR QQGREQVDES ALFRMIGQMR
EIVTTAQKAT RKARRDADRR QHLKASPPPD KPIPPKTDVA DPQADNLPPA KPFDQIEEW
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniB |
TniB |
Tn5053.6 |
909 |
1826-2734 |
+ |
| Class: | Accessory Gene |
| Transpoase Chemistry: | Serine |
| Comment: | homologous to TnsC protein of Tn7 putative ATP-binding protein |
Protein Sequence:
|
MDEYPIIDLS HLLPAAQGLA RLPADERIQR LRADRWIGYP RAVEALNRLE TLYAWPNKQR MPNLLLVGPT NNGKSMIIEK FRRTHPASSD ADQEHMPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSSIAT LDMARYLLTR SEGTIGELAH LLMAAALVAV ESGEEAINHR TLSMADYTGP SERRRQFERE
LM
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniQ |
TniQ |
Tn5053.6 |
1218 |
2731-3948 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Target Site Selection |
| Function: | putative transposition gene |
| Comment: | similar function to Tn7 tnsD? |
Protein Sequence:
|
MKPAPRWPLH PAPREAEALS SWLNRVALCY HMEVSELLEH DLGHGQVDDL DTAPPLALLA MLSQRSGIEL DRLRCMSFAG WVPWLLDSLD DQIPAALETY
AFQLSVLLPR LRRKTRSITS WRAWLPTQPI HRACPLCLND PENQAVLLAW KLPLMLSCPL HGCWLESYWG VPGRFLGWEN ADAEPRTASD AIAAMDQRTW
QALTTGHVEL PRRRIHAGLW FRLLRTLLDE LNTPLSTCGT YAGYLRQIWE CCGHPLRAGQ SLWRPYETLN PAVRLQMLEA AATAISLIEV RDISPPGEHA
KLFWSEPQTG FTSGLPAKAP KPEPVDHWQR AIQAIDEAII EARHNPETAR SLFALASYGR RDPASLEQLR AAFAKEGIPP EFLSHYEPSL PFACLRQNDG
LSDKF
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniR |
TniR |
Tn5053.6 |
615 |
4009-4623 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Function: | putative resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
| Comment: | resolution of cointegrates || Protein: ACE81792.1 |
Protein Sequence:
|
MLIGYMRVSK ADGSQATDLQ RDALVAAGVD PAHLYEDQAS GKREDRPGLA SCLKALRSGD TLVVWKLDRL GRDLRHLINT VHDLTGRGIG LKVLTGHGAA
IDTTTAAGKL VFGIFAALAE FERELIAERT VAGLASARAR GRKGGRPFKM TAAKLRLAMA AMGQSETKVG DLCQELGITR QTLYRHISPK GELRPDGEKL
LSRI
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniM |
TniM |
Tn5053.6 |
321 |
4662-4982 |
- |
| Class: | Passenger Gene |
| Sub Class: | Hypothetical |
| Function: | putative modulator protein of transposition |
Protein Sequence:
|
MDGLRRRAQA FERGQGFLFA KPMPAAAFAV FVSQWRGATM NANDPTATSC CVCCKEIPLD AAFTPEGAEY VEHFCGLECY QRFQARASTA TETSGEPNAC
GSPPSN
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merE |
MerE |
Tn5053.6 |
237 |
4998-5234 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | mercury transport |
| Target: | Mercury |
| Comment: | similar to urf-1 in pKLH2 (GenBank AF213017), pKLH272 (Genbank Y08992), pMER610 (GenBank Y08993), pKLH210 (GenBank Y10102), Tn5036 (Genbank Y09025), orf1 in Tn501 (GenBank Z00027), and urf-1 in Tn5041 (GenBank X98999) |
Protein Sequence:
|
MNSPERMPAE THKPFTGYLW GTLAVLTCPC HLSILAAVLA GTTAGAFLVE YWVITALGLT GLFLLSLARA LRAFRERS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merD |
MerD |
Tn5053.6 |
462 |
5231-5692 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
Protein Sequence:
|
MFYGTGIGFA ARGLNSAKRY MHCREPTKRR CSMNAYTVSR LALDAGVSVH IVRDYLLRGL LRPVACTTGG YGLFDDAALQ RLCFVRAAFE AGIGLGALAR
LCRALDAANC DETAAQLAVL RQFVERRREA LANLEVQLAA MPTAPAQHAE SLP
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merB |
MerB |
Tn5053.6 |
639 |
5708-6346 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | putative organomercurial lyase |
| Transpoase Chemistry: | merB1 (Tn5718) Chemistry |
| Target: | Mercury |
| Comment: | organomercurial lyase |
Protein Sequence:
|
MKLAPYILER LTSVNRTNGT ADLLVPLLRE LAKGRPVSRT TLAGILDWPA ERVAAVLEQA TSTEYDKDGN IIGYGLTLRE TSYVFEIDDR RLYAWCALDT
LIFPALIGRT ARVSSHCAAT GAPVSLTVSP SEIQAVEPAG MAVSLVLPQE AADVRQSFCC HVHFFASVPT AEDWASKHQG LEGLAIVSVH EAFGLGQEFN
RHLLQTMSSR TP
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merA_p |
MerA_p |
Tn5053.6 |
327 |
6361-6687 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
Protein Sequence:
|
MAKTPMVRFS KLFSIPLDSV HEYGSKVTLS NSNSKGQAEE GSGRLIGVQA VAPEAGELIQ TAVLAIRNRM TVQELADQLF PYLTMVEGLK LAAQTFTKDV
KQLSCCAG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merD1 |
MerD1 |
Tn5053.6 |
348 |
7712-8059 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
Protein Sequence:
|
MNAYSISKLA DDACVSVHVV RDYMIRGLLH PARRTESG*N IFDDKTLGRL RFLRAAFESG IGLDELARLC KALDADDSES LDRCVERVRW KIDVRRTVLT
VVEASLNEMA AGAAT
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merB1 |
MerB1 |
Tn5053.6 |
639 |
8056-8694 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Transpoase Chemistry: | merB1 (Tn5058) Chemistry |
| Target: | Mercury |
| Comment: | organomercurial lyase |
Protein Sequence:
|
MDKTIYSKKI AESLSSGNHP KEFATLFVAL LRQLAMGGPV SREKLAGALG WSGARVATVL EQAPGTEYDD EANIIGLGLT LRETSHVFEV DGRHLYTWCA
LDTLMFPALT GKIARVTSRC AATGRPITLT VAPEAVLHVE PAEAMVSLRT PDTSPDIRCS FCCHVHFFAS PSIANSWAST HQGIEVVPVE SAFDLGHDVA
LKLLEDCEES PV
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merG |
MerG |
Tn5053.6 |
654 |
8775-9428 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
Protein Sequence:
|
MFCDIRLKLR RVRACLTIVL ASTATLGMPN QALAAYDFSK LGAAIETLSP ETVSDWEKKA RAGDAMAQNI MGLAYKCGMG VKQNHAASIQ WFRRAAEQGE
ADAQFNLGRL YGSEVDGMYK NGRAAPANDA EAFKWYRLAA EQGHTQAQVR LAQLFAKGLT DIAPDQVQAY QWMSLAAASG EPTAAKVVAD YAAQMKPEQL
QQAQLLAEEW QRRQGTK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merA |
MerA |
Tn5053.6 |
1710 |
9464-11173 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
Protein Sequence:
|
MQELNEVGLS VAGMTCPSCT RHVEDALLAV PGVTRAAVDY PSNKAQVTGN RLDVSALVAA VGALGYGATP TDEFESKERS VEQPGLLGKA AQWLSGERAV
EKPAGQLHVA IIGTGGAAVA AALKAAENGA RVTLIERGTI GGTCVNVGCV PSKIMIRAAH IAHLRRESPF DVGLSATPPV VLRDRLLAQQ QARVDELRHA
KYESILESNP SINLVRGSAR FKDGQTLIVE AAEGDTREVA FDRCLIATGA SAAIPPLPGL AGTPYWTSTE ALVSEAIPKR LAVIGASVVA LELAQAFARL
GSEVTVLARR TLFASDDPAI GEAVTAAFRA EGITVLTQTQ ASAVTYCDRQ FILTTAQGEL KVDQLLVATG RTPNTASLNL ERAGVTFDSQ HRILIDQGMR
TSASNIYAAG DCTDQPQYVY VAAAAGTRAG INMTGGDVKL DLDAMPAVVF TDPQVATVGY SEAEAQRIGL QTESRTLTLD NVPRALANFD TRGFIKLVAE
AGSGRILGVQ AVTPEAGEII QTAAIAIRAR MTVQDLANQL FPYLTMVEGL KLVAQTFSKD VTQLSCCAG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merP |
MerP |
Tn5053.6 |
276 |
11361-11636 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
| Comment: | periplasmic mercuric ion binding protein |
Protein Sequence:
|
MKKLFASLAL AAAVAPVWAA TQTVTLAVPG MTCATCPITI KKALSKVDGV SKTEVDFSTK LAVVTFDDAK TNVQALSKAT TDVGYPSELK K
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merT |
MerT |
Tn5053.6 |
351 |
11650-12000 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | cytosolic mercuric ion transport protein |
| Target: | Mercury |
Protein Sequence:
|
MSEPQNGRGA LFAGGLAAIL ASTCCLGPLV LVALGFSGAW IGNLTVLEPY RPLFIGAALV ALFFAWKRIY RPVQACKPGE VCAIPQVRAT YKLIFWIVAV
LVLVALGFPY VVPFFY
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merR1 |
MerR1 |
Tn5053.6 |
435 |
12072-12506 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
Protein Sequence:
|
MENNLENLTI GVFAKAAGVN VETIRFYQRK GLLPEPDKPY GSIRRYGEAD VVRVKFVKSA QRLGFSLDEI AELLRLDDGT HCEEASSLAE HKLKDVREKM
ADLARMETVL SELVCACHSR QGNVSCPLIA SLQGGTSLAG ASTA
|
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| repeat t2 |
Tn5053.6 |
50-67 |
ACACGTCAGC CGAGGACT |
| repeat t4 |
Tn5053.6 |
110-128 |
TCAATACTCG TGTGCACCA |
| IRL |
Tn21 |
7074-7111 |
GAATCGCACG AAATAAAAGG CAAAAGACTC CACGGGGG |
| repeat i4 |
Tn5053.6 |
7084-7102 |
AAATAAAAGG CAAAAGACT |
| IR Tn21-like |
Tn5053.6 |
12502-12539 |
GAATCGCACG AAATAAAAGG CAAAAGACTC TGCTGGTG |
| repeat i4 |
Tn5053.6 |
12512-12530 |
AAATAAAAGG CAAAAGACT |
| repeat i1 |
Tn5053.6 |
12576-12594 |
GGCACGTCAG TGGAAGACT |
|
| References |
|
|
