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Internal Transposable Elements | |
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Internal Repeats | |
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Name: Tn5046 |
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Family: Tn3 Group: Tn3 |
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Evidence of Transposition: no |
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Host |
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Host Organism: | Pseudomonas sp. LS46-6 | | |
| | Date of Isolation: | 2001 |
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Map |
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Terminal Inverted Repeats (IR) |
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IRL (Length: 46 bp) | | GGGGTTTGGGGAGCAATGGAACAGAAAGTGCACTTAAGCCCTACCA |
IRR (Length: 46 bp) | | GGGGTTTGGGGAGCAACGGAACAGAAAGTGCACTTAAGCCCTGCCA |
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Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTTTGGG GAGCAATGGA ACAGAAAGTG CACTTAAGCC CTACCAGCGC CGTTCAGAGC CTTCTTCCCA GGCATCGGCT TCGATAAAGC AGTTGCGCAT 100
GTCGGCTTCC TGGCTGATCT CGGTCAGCAA GTCATGCACG GTCTTGTCCA GCTCATCGTC GCTCCGATAC GGAATGGCCA GTTCGTAGTT GCCCGACTCC 200
AGCCGTTTCA TACTGTAGGG CTCCAAGCAG TAGCGCTCGA AGTTTTCCTT GGCCCGTTTC CGGCCGCGAA CGAACTTGCT GTTGTTCACC ACCGCCAGGC 300
GCAGCGTGAC GGTGGCCACC TGCTCGGCGG CGGGCTCTGC CGGCGACGCG ACATTGCGTT GCTGACCTCG CGGCTGGGCA CTCTTCTGGT GTGCGCCGAT 400
CTCAACACCA CGATGGCGCA GGTAGCTGTA CAGCGTGCTC TTGGAGATGT GTAACTTCTC GCCGATGGCG CTGACGCTCA GGCGGCCCTC GCGGTACAGC 500
GTCTCGGCCG CCATGGAGGT GGCCTCGGCC TTGGCTGGGA AGCCCTTGGG ACGGCCACCG ATCCGGCCCC GCGCCCGCGC GGCCGACAAA CCCGCCTGAG 600
TCCGCTCGCG GATCAGCTCG CGCTCGAACT CGGCCAGCAA GGCAAACAGG TTGAACACCA AGCGACCTTG GGCGTGGGTG GTGTCGATTG GGTCATTCAG 700
GCTCTGCAAG CCGACCTTGC GCTCTGCCAG CTCGCCGACC AGCTCGACCA GGTGTTTGAG GGAGCGCCCG AGGCGATCCA GCTTCCAGAT CACCACGGTG 800
TCGCCCGCTC GAACATGGGC TAGCAACTTG TCCAACTCCG GCCGGGCGCT TTTCGCGCCG CTGGCGATGT CTTGATAGAT GCGTTCGCAC CCGGCCTGTT 900
TCAGGGCATC GACCTGGAGG TCGGCGTTCT GATCCCGAGT GCTCACCCGC GCATAACCGA TCTTCATCAA AAGTACCGTT TACTCGACTA CGTTAGTAAT 1000
AGTTGAACTT TGATTAAGCG TACCAGTTAT TTGAACCGTA GCGCAGGTAG GTTAACCAGC CGATTCCTGT CCACTTAAAG TTCGGCAAAA CGAAGGTTTT 1100
TTTGAACCAT TGCATAGCCC TTTGTGATTG GCGTATAAAC ACACAAACAC CTACTAGCGG GGAACGCCAT GAATACGATT CGCTGGAATG TCGCCGTCTC 1200
GGCCGACACC GACCAGTCGC TTCGGATGTT TCTGGCCAGC CAGGGCGGTG GCCGGAAAGG CGACCTGTCG CGCTTCATTG AAGAGGCGGT GCGGGCCCAC 1300
ATCCTGGAAC TGACGGCCGA ACAGGCCAAG GCCGCTAATG CCCATCTGAG CGAGGCAGAG CTGACCGAAG CGGTTGACGA AGCGCTCGAC TGGGCACGTA 1400
AGCGCTGATG CGGGTCGTGT TGGATACCAA CATCCTGTTC AGCGCACTGA TCTCGCCGCA TGGCGCGCCC GATGCGATCT ACCGTGCCTG GCGGGCGGCG 1500
CGTTTCGAGG TAGTGACCTC GCGGATGCAG CTCGATGAAA CTCGCCGAGC CAGCCGCTAC CCCAAGCTCC AGGCCATCCT TCAGCCCGCC AAAGTGGGAG 1600
CCATGATCAA TAACCTGCAA CGGGCTGTGG TACTGGAGCG TCTGACCATC GAGGTCGAAG CCGATGATCC GGATGACTCG TTTCTGCTGG CCATGGCCCT 1700
GGCAGGCGAT GCGGACTACC TGGTGACCGG TGATCGCCGC GCCGGCCTGC TGCAACGCGG GCACATCGAA CGCACGCGGA TTGTCACGCC CGCCGTGTTC 1800
TGCGCCGAGG TGCTGTGATC GATGCCGGTC GGTTTTCTGA CCCAGGAGCA ACGCGACGGT TTTGGCCGCT ATGTCGATGC CCCCAGTCGT GAGGAGCTGG 1900
AACGCTACTT CCACCTGAGC GACGACGACC ACAAAATCCT CCTACCGCTG CGCGGCGAGC ACAACCGCCT TGGCTACGCC ACCCAACTGA CCAGCATCCG 2000
CTACCTGGGC ACTTTTCCCG ACGACTTTTC AGCCGTCCCC CAAGAGGTGC TGCAAGCGCT CAGTCGCCAG TTAGGCATTA CCGATCCAAC TTGTATCCAG 2100
GCCTATGCCG AAACCCGCCA ACGTCAACGT CATGCCGCCG AGATTCAGGA GCGTTACGGC TATCGGGTGT TTGCTGATTC CAGCGTCGGC TTTCGACTTG 2200
CCCGCTGGCT GTATGCGCTC TGTTGGACAG GGACAGATCG TCCTGGCGAG TTGTTCAATC GGGCGACGAC CTGGTTGCTG ACGCACAAGG TTTTACTGCC 2300
CGGCGTCACC GTTCTGGAAC GGTTCATCGC CCAACTGCGC AGCCGGGTCG AAGAACGCCT CTGGCTAACC CTTGGCCGCA GTGTGAGCGA GGCGCAACGG 2400
CAGCAGCTAC AGGACTTGCT GCTGGTCGCC GAAGGCAACC GCAGTTCCCG GCTGGATCAA CTGCGCTCCG GCCCGGTGAT GGTCAGTGGC CCCGCACTGA 2500
TTCGGGCGCT GCGCCGGCTT GATGACGTGC GCGGCATCGG CATCGCCTTG CCAGCGGCGG CGCACATCCC GCCCAGCCGT ATCGCGGCCC TGGCTCGCTT 2600
CGCCAACACC GCCAAGGTCA CGGCGATCAA CCGGCTGCCG GCGTCGCGGC GGATGGCGAC ACTGGTGGCG TTCGCCCTGT GCCTGGAGGC CACCGCGCAC 2700
GACGACGCCC TGGAGGTCCT GGAAGCGCTG TTACGCGACC TGTTCAGCAA CGCGGAGAAG GCCGACAAGA AAGCCCGCAT GCGCAGCCTG AAAGACCTGG 2800
ATCGCTCGGC GGCGACGCTC GCCGCCGCGT GCAAGGTCGT GCTGGACAGC TCAATCAGCG ATGACAAGGT GCGCGCCCGG CTGTTCAACG ACCTGCCGAG 2900
GGCCTCGCTG GAGAAAGCCC TGGAAGATGT CAATGCGCTG ATCCGCCCGG TTGACGATGT GTATTTTCTC GCCCTGGAGG CGCGCTACCG CAGTGTGCGC 3000
CGTTTCCTGC CCGACCTGCT CAAGCACATC CGCTTCGGCT TCAGCCCGGC CGGCAAAGGC GTGGTCGCCG GCCTGGATTG GTTGCAGCTG AACCTGCCCC 3100
GCCGGAAACC GGAGGATGAC GCGCCGCAGG AGATCGTGGC CAAGGCTTGG CAGAAGCACA TTACCCGCGA GGATGGCTCC CTCGACATGG GCGCCTATGT 3200
GTTCTGCACG CTCGATGCGC TGCGCACGGC CCTGCGCCGG CGCGACGTGT TCGTCTCGCC CAGTTGGCGC TATGCCGACC CGCGTCTCGG CCTGCTCGAC 3300
GGTGCCGAAT GGCTGGCGGC GCGGCCGATC ATCTGCCGCT CGCTGGGCCT GACCATTGAC GCCGGCACCA CCTTGGATGC GCTGAGCGCC GAGTTGGATG 3400
CGACCTGGCA GGCGGTCGCG GCCCGCCTAC CCGACAACCC CGCGATCCAG CTGAGCGAGA ACCGCGAGGG CAAGACCGAG CTCTCGCTCG GCACACTGTC 3500
CAAGCTGGAG GAGCCGAACT CGCTGCTGCA ACTGCGAGCA GCCGTGGCTG ATCTGATGCC GCGTGTCGAT CTGCCGGAAA TCCTCTTGGA AATCGCCGCT 3600
CGCACCGGCT TCGCCGAGGC CTTCACCCAT GTGTCCGAGC GCAATGCGCG CGCCGACAAC CTGGTCACCA GCCTCTGCGC GGTGCTGCTG GGTGGGGCTT 3700
GCAACACCGG CCTGGAGCCG CTGATCCGCA CCGACAATCA GGCGCTACGC CGCGACCGGC TGTCCTGGGT CAGCCAGAAC TATATCCGTG ACGACACGCT 3800
GTCAGTGGCA AACGCCATTC TGGTGGGGGC GCAGAGCCAA CTGGAGCTGG CCCAGGTCTG CGGTGGTGGT GAGGTCCCTC CCGCCGATGG CATGCGCTTC 3900
GTGGTACCGG TGCGCACCGT GCATGCTGGC CCCAACCCGA AGTATTTCGG CACCGGCCGG GGCGTCACCT GGTACAACTT GATTTCCGAT CAGTTCTCCG 4000
GCCTCAACGC CATCACCGTG CCCGGCACCC TGCGCGACAG CCTGGTGCTG CTGGCCGTGG TGCTGGAACA CGAGACCGAG TTGCAGCCGA CGCAGATCAT 4100
GACCGACACC GGGGTCTACA GCAATGTGGT GTTTGGGCTG TTCCGCCTGC TCGGCTACCA CTTCAGCCCG CGCCTGGCCG ACGTTGGCGG TACCCGTTTC 4200
TGGCGCACGC GCCCGGAGGC GGATTACGGC AAACTCAACG GCCTGGCCCG GCAGTCGGTC AAGCTCGATC TGATCGCCGA GCACTGGGAC GACCTGCTAC 4300
GCCTGGCCGG CTCGCTCAAG CTCGGCCGAG TGCCGGCCAC CGGCATCATG CGCACCCTGC AAACAGGGGA TCGTCCCACC CGCCTGGCCC AGGCGCTGGC 4400
TGAGTTCGGT CGCATCGAGA AGACCTTGCA CACCCTGACC TACATCGACG ACGAGTCCAA GCGCCGCGCC ACCCTGACCC AGCTGAACCG GGGCGAAGGC 4500
CGCCACAGCC TGGCCCGCCC GGTGTTCCAC GGCAAACGCG GCGAGCTGCG CCAGCGCTAC CGCGAAGGCC AGGAGGACCA GCTCGGCCCC CTCGGCCTGG 4600
TGGTGAACAT CATCGTGCTG TGGAACACCC TCTACATGAC GGCGGCCGTA GAACGGCTCA GGCAGCACGG CTACCCGGTG CTGGAGGAGG ATGTCGCGCG 4700
GCTCTCGCCA CTGATCCACG AGCACATCAA CATGCTGGGC CGTTACTCCT TCGCGGTGCC GGAAGAGGTT ACCCGCGGCG AACTGCGGCC CGTGCGCAAT 4800
CCGGACGACG ACCAGTAGGT GTAACGGCCT GGGTTCGAAA TCGGCCGGGC ACCGCACTCG TAGCCACTTC CAGCTCAGAC GGATTGCGAC TGACGGAGTC 4900
CTCGGGCTCA CGCTTTCTGC GACCAGCAAG AGCCACTTTT CCGGTGCAGC GCGAATTAGC CGTCCTGACG GGTACTGACC TTTTGTGTGC AGGGGTGATC 5000
AGGCTCGGAT GCCGCCCTCT TATCTGCTCG CGACATGAAA CGCTGATAGC ACTCCAGGCC ACAGAAGTGC ACGACATACT CGGAACCTTC CGGCGTCAGT 5100
GCGGCGTCAA GGGGAATGTC CTTGCAGCAT TCGCAGCAGC TGATGGTGGA GGTGTTGTTT GTGTTCATGA TGGGGGTTCC TCCATGTCCA AGAAAAGGTA 5200
GCAACGCTTT CCCCCCGTGA CTGAGCGCCG ATCGACCTGC AGCCTCCCAG CCCAACTCGG CAGTGGTGGT CGCGCCGTGC TCCGAGCGGG TCACGGTCGC 5300
TTCCGAAAGG CCTGCAATGC CGCTCGCAGG AAGAGGATGA AGAAAACCGC CAGCACGAGC GTCGCGAGGC TCCACTGCTC GCTGACGAAC GCGCCGGCCG 5400
CTGTCCCCGA AAGCAGCAAT GCCAGCACCG GCAGATGGCA AGGGCAGGTG AGCGCGGCGA GCACGCCCCA GGTGTAAGCA CGCCAGCGGA AGACCTTGCT 5500
TGACTCAACG TGTACGGCGT TACGCATAGG CAGAACCTTC GCCGGCGCAA TGAGTCAGCC CGGCCAGCTG GGTTGCCACT GCGGCTAAGG CCGCCTGCCG 5600
TGCCGTGACT AGCCGGAGCA GGCACTCGAC GCAGCCGATC AAGTCGGCGC CATCGTCCGC ATCGAGCGCC CGGCAGAGCC GTGCCAATTC GTCGAGCCCG 5700
ATACCAGACT CGAAGGCGGC GCGCACGAAG CGCAGACGCG CCAGGGACCG CTCATCGAAA ATGCCGTAAC CGCTCTCCGT GCGCCGCGCG GGGTGCAGCA 5800
AGCCACGCAG CACATAGTCG CGGCCAACAT GCACGCTGAC GCCCGCGTCC TCGGCCAGTC TGGATATGGT GTAGGCATTC ATCACCGACA CTCCCGGTCT 5900
TCCCCGCAAA CTAGGGCGCT CAGATATTTC CTTCCGGCTA GGCGTTCAGG TAGCCAGATG AGCAATGGCG TAACCCCTAG TGCCAGGAGC AACCACAGCC 6000
GGGAGTGATA CTCGCCGTTT GGGGCAAACC CATAAGCCAG CAGCGCACCC AGCGCGAGCA TCAGGAAATA CGGCCCGGTG ATGTAGCAGT GAAGGCGGCG 6100
ACAGCGCGCG GCGTTGACCA GGCAGGCGCC GCCCATCACG AGTAGCGCGG CGCTCGCTGC CAGGAACAAC GCAGGGCGTC GATCCGCCAG AACAAGCGCT 6200
ATGGTCGCCA CGACGGCAGG CAGCCCCCAT AAGCTGATTA CCTGCCAGGT CTTGCGCAGG CTGTCGCGAC TGCCGAGATC GCTTGCCGTG TCGTTCATGC 6300
TTCAACCTCG CGCGCTCATT ACCCGGCGCA GCAGGACAGC TGCTTGACGT CCTTGGCGAA GGTTTGCGCC GCGAGCTTCA GCCCCTCGAC CATCGTCAGG 6400
TAGGGGAACA ACTGGTCGGC CAGTTCCTGC ACCGTCATCC GCGCCCGGAT GGCGATGGCG GCGGTCTGGA TCAGTTCGCC CGCCTCCGGG GCCACCGCCT 6500
GCACGCCGAT GAGCCGTCCG CTACCTTCCT CCGATGACCA GCTTGATGAA ACCCGCGTGT CGAAGTTGGC CAGTGCGCGA GGCACGTTAT CCAGGGTCAA 6600
GGTGCGGCTG TCGGTCTCGA TGCCGGCGTG GTGCGCCTCC GCTTCGCTGT AGCCCACGGT GGCCACCTGC GGATCGGTGA ACACCACGGC CGGCATGGCG 6700
TCGAGATTGA GCTTCGCCTC GCCGCCGGTC ATGTTGAGCG CCGCACGGGT GCCTGCGGCC GCCGCCACGT AGACGAACTG CGGCTGGTCG GTACAGTCGC 6800
CGGCCGCATA GATATCCGGG GCACTGGTGC GCATGCCCGA GTCGATCTGG ATGGCACCGC GTTCGTCCAG CTTCACGCCG GCGCCTTGCA GATTCATGCC 6900
TTGGGTGTTG GGCGTGCGGC CGGTGGCGAC GAGTAGTCGG TCGGCATGCA GCTCGCCATG ATTGGTGCTC AGGATGAACT CGCCGTCGAC GTGGGACACC 7000
TGGCTGGCTT GCGTGTGTTC CAGCACTTCG ATGCCCTCCA TACGGAAGGC TGCCGTCAGC GCTTCACCGA TGGCCGGATC TTCGCGGAAG AACAACGTGC 7100
TGCGTGCCAG GACCGTGACC TTGCTGCCCA GCCGGGCAAA GGCCTGCGCC AGTTCCACCG CCACCACCGA GGAGCCGATC ACGGCGAGCC GCTTAGGAAT 7200
GGTGTCGCTC GCCAGCGCCT CGTCCGAGGT CCAGTACGGG GTGTCCTTGA GTCCGGGAAT CGGTAGAACG GCCGGGCTCG CGCCGGTGGC GATCAGGCAG 7300
CGGTCGAAGG CGACGATGCG CTCGCCGCCC TCGGCCAGTT CCACGCTGAG CGTGCGGCCG TCCTGGAAAC GGGCGGTGCC GCGTACCAGG GTGATCGCCG 7400
GCGTGCTCTC CAGAATGCCT TCGATCTTGG CGTGGCGCAG TTCGTCGACA CGACCCTGTT GCTGGGCGAG CAACCGCTCG CGCAGGACGG TCAGGCTCGT 7500
GGTGGACAGT CCGGCGTCGA ACGGGCTCTC GCGCCGCAGA TGGGCCACAT GCGCGGCGCG AATCATGATC TTGGAGGGCA CGCAGCCAAC GTTGACGCAG 7600
GTGCCGCCGA TGATGCCGCG CTCGATCAGG GTGACGCGCG CACCGCCTTC CACCGCCTTG AGCGCGGCCG CCATGGCGGC GCCACCGCTG CCGATGACCG 7700
CCACGTGGAG CCTGTCGCCA TCTTTCCCGG CGCCAATGCT GCCGCTCAAC CAGCCCCGCG CCTTGTCGAG CAGGCCTGAG CGGGTAGGTG CCGTGGCGTC 7800
TTCGAACGCC GCTCGATACC CCAGGGCCTC GACGGCGGCC TGCATCTGTT CACGGCTTAC GCCCTCGTCG ACCTTCAGTT CGGCCTTCCC GCTGGCGTAG 7900
GAAACATCCG CCCGATGCAC GCCGGGGATC TTCTCCAAGG CCTCTTTCAC ATGCTCGACA CAGGAGGCGC AGGTCATGCC GACGATTTGT AGTTTGGTCA 8000
TAGTGTTATT CCTTCATTTT GGCGGAGTCG GACAGGACGT CGGGGAGCAA CGGCGGTGGG CGGGCGACAC GAGATCCCAG ATGGACACCC CAAACATGAG 8100
GGCCAGGCCG ATATAGAGCA GCCAGCCGCT CCGCCAGCCG TGAGCCAGCA TCAAATACAC CGCTATCAGC ACCAGGGCCG GGCCGATCAG GCCAGGCGCA 8200
GCGCGTCGCC ACTGCCGGTG ACTGAACCCG CCGAGGGCAT TGACGAGCAG GGCCAGCCCG GCAAATAACG GCAGCAGCGT GGTGATGAAC AGGCCTTCCC 8300
ACTGGCTCAG AAAGCCCAGA CCGATCGCGG CCCCCAGACC GGCAAGGGCG GGGAAACACG AGGCACAGCC TATGGCAGAA ATCAGCACGC CAACGGACCC 8400
GGCTTTGTCA CCGATCCGCG TGAACAAATT GAAAGGGTTT GCCATCGGAA TGCCCGCCTA CTGCTTGACG CTGGACGGGT AGCCGGCGTC CTCGGTCGCC 8500
TTAGTCAGCG CCTGGACATT GGTCTTGGCA TCATCGAAGG TGACGATGGC CTCGCGGTTC TCATAGCTCA CCTCGGCCTT GGTCACGCCC TCGACCTTGG 8600
TCAGCGCCTT CTTCACCGTG ATCGGGCAAG CGGCGCAGGT CATGCCCGGC ACCGCCAGAG TGACGGTCTG CGTGGCCGCC CAGGCAGGTG CGGCGACTAG 8700
GGTGGCGAGG GCGAAGGATG CAAGCAGTTT TTTCATGGCG GACTCCTGAT CAGTAGAACA AGGGAAGGAT GTAGGGGAAG CCGAGCGCGA CCAGCACCAA 8800
GGCCGTTACC AGCCCGAACA GCAGCTTGTA GGTGGTGCGT ACCTGGGGCA CGGCGCAGAC CTCACCCGGA AAGCAGACTT GAGCCGGGCG GAAAATGCGT 8900
CGCCAGGCGA AGAACAGCGC GACTAACGCC GCACCGATGA AGAGCGGGCG GTAAGGTTCC AGCACGGTCA GGTTGCCGAT CCAGGCCCCG CTGAATCCCA 9000
GTGCGATCAG AACCAGCGGC CCAAGACAGC AAGTCGAGGC GAGAATCGCC GCAAGCCCCC CGGCGACAAG AGGGGCGCGC CCGTTTGATG GTTCAGACAT 9100
GCATTTCTCC TTTCGAGCAT GTGAGCGATG GTTTAAGGTT ACTTCCGTAG TCAACTACGG AGTCAAGCAG TATGGAAAAC ACTGTGGAAA GCCTGACCAT 9200
CGGCGCCTTC GCCAAGGCGG CCGGGGTCAA CGTGGAAACC ATCCGGTTCT ATCAACGCAA GGGGCTGTTG CCCGAACCGG ACAAGCCCTA CGGCAGCATT 9300
CGCCGCTACG GCGAGGCGGA CGTGGCCCGG GTGAAATTCG TCAAATCCGC GCAACGACTG GGCTTCAGCC TCGATGAGGT GGCCGGGCTG TTGCGATTGG 9400
ATGACGGCGC TCACTGCGAC GAAGCGCGCG TGCTCGCCGA GCAGAAGCTC GAGGATGTGC GGGGGAAACT CGCGGATCTG CGGCGGATCG TGTCGGTGTT 9500
GGCGCGGCTG GTTCACGATT GTTGTGCGAG CCACGGGTCG GTTTCCTGTC CGCTGATCGT TTCGCTGCAG GGGGAAAAGG AACTGCGCTG ACTCCGCGCG 9600
TTAACCGAGG ATTTCCCGAT GCGTGAGGCA CCTCCGGGGT CGGCTTGCGC TTGGCAAAAC AGCGGCGCTC ATTGAGCGCC GCTGAATGGC CAAAGGAGCA 9700
CTTGCATAGG CCACAGGTTA GTACTGCATC AGCAGCTCAT GTTCTACTTT GCAGGCGGAC AGCCGGGCTG CGCCTCGACC CGGCCAGCCG CCGGTGGCCC 9800
CAGTTGCTCA ATCTTCTTGG CGGTTTCCGC CACCAAGGCC GCCTCAGCCT TGTCGCGCAT AGCGCGATTC GCTCGATTGA ACGGTCGCTC CCGCTCTCGG 9900
CCCATACGGT GGATGACAGC AGAGTCGCAC CAACTATCAG CAGTAGTCTT AGGTATTTCA TAACAGCCTC CTCTCGGGTT TTCTACCCAC GAGCCGACTC 10000
TATCTCCGTA GTTAAGTACG GAATCAAGGA GAGATGGAGA TGAAGGTCCT GGATTATGGC GCTGAGAGGA AATGGCAGGG CTTAAGTGCA CTTTCTGTTC 10100
CGTTGCTCCC CAAACCCC
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Recombination Sites |
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Name |
Coordinates |
Gene |
Sequence |
res |
972-1107 |
136 |
AGTACCGTTT ACTCGACTAC GTTAGTAATA GTTGAACTTT GATTAAGCGT ACCAGTTATT TGAACCGTAG CGCAGGTAGG TTAACCAGCC GATTCCTGTC CACTTAAAGT TCGGCAAAAC GAAGGTTTTT TTGAAC |
res_site_III |
982-1023 |
42 |
ACTCGACTAC GTTAGTAATA GTTGAACTTT GATTAAGCGT AC |
res_site_II |
1026-1060 |
35 |
GTTATTTGAA CCGTAGCGCA GGTAGGTTAA CCAGC |
res_site_I |
1080-1107 |
28 |
GTTCGGCAAA ACGAAGGTTT TTTTGAAC |
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ORFs |
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Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
tnpR |
Tn5046 |
41-967 |
Accessory Gene |
Resolvase |
- |
RHH_6 |
Tn5046 |
1169-1408 |
Passenger Gene |
Antitoxin |
+ |
PIN_3 |
Tn5046 |
1408-1818 |
Passenger Gene |
Toxin |
+ |
tnpA |
Tn5046 |
1822-4818 |
Transposase |
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+ |
urf-2-CAC80083.1 |
Tn5046 |
4956-5294 |
Passenger Gene |
Hypothetical |
- |
urf-1-CAC80082.1 |
Tn5046 |
5291-5527 |
Passenger Gene |
Hypothetical |
- |
merD |
Tn5046.1 |
5520-5885 |
Passenger Gene |
Heavy Metal Resistance |
- |
orfY-WP_004574523.1 |
Tn5046 |
5882-6298 |
Passenger Gene |
Hypothetical |
- |
merA |
Tn5046.1 |
6319-8001 |
Passenger Gene |
Heavy Metal Resistance |
- |
merC |
Tn5046.1 |
8014-8445 |
Passenger Gene |
Heavy Metal Resistance |
- |
merP |
Tn5046.1 |
8458-8736 |
Passenger Gene |
Heavy Metal Resistance |
- |
merT |
Tn5046.1 |
8750-9100 |
Passenger Gene |
Heavy Metal Resistance |
- |
merR |
Tn5046.1 |
9172-9591 |
Passenger Gene |
Heavy Metal Resistance |
+ |
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpR |
TnpR |
Tn5046 |
927 |
41-967 |
- |
Class: | Accessory Gene |
Sub Class: | Resolvase |
Function: | resolvase |
Transpoase Chemistry: | Serine |
Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
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MKIGYARVST RDQNADLQVD ALKQAGCERI YQDIASGAKS ARPELDKLLA HVRAGDTVVI WKLDRLGRSL KHLVELVGEL AERKVGLQSL NDPIDTTHAQ GRLVFNLFAL LAEFERELIR ERTQAGLSAA RARGRIGGRP KGFPAKAEAT SMAAETLYRE GRLSVSAIGE KLHISKSTLY SYLRHRGVEI GAHQKSAQPR GQQRNVASPA EPAAEQVATV TLRLAVVNNS KFVRGRKRAK ENFERYCLEP YSMKRLESGN YELAIPYRSD DELDKTVHDL LTEISQEADM RNCFIEADAW EEGSERRW
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
RHH_6 |
RHH_6 |
Tn5046 |
240 |
1169-1408 |
+ |
Class: | Passenger Gene |
Sub Class: | Antitoxin |
Function: | transposition protein, putative |
Sequence Family: | RHH_6 (Pfam:PF16762) |
Comment: | VapB |
Protein Sequence:
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MNTIRWNVAV SADTDQSLRM FLASQGGGRK GDLSRFIEEA VRAHILELTA EQAKAANAHL SEAELTEAVD EALDWARKR
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
PIN_3 |
PIN_3 |
Tn5046 |
411 |
1408-1818 |
+ |
Class: | Passenger Gene |
Sub Class: | Toxin |
Function: | transposition protein, putative |
Target: | single stranded RNA |
Sequence Family: | PIN_3 (Pfam:PF13470) |
Protein Sequence:
|
MRVVLDTNIL FSALISPHGA PDAIYRAWRA ARFEVVTSRM QLDETRRASR YPKLQAILQP AKVGAMINNL QRAVVLERLT IEVEADDPDD SFLLAMALAG DADYLVTGDR RAGLLQRGHI ERTRIVTPAV FCAEVL
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpA |
TnpA |
Tn5046 |
2997 |
1822-4818 |
+ |
Class: | Transposase |
Function: | transposase |
Transpoase Chemistry: | DDE |
Protein Sequence:
|
MPVGFLTQEQ RDGFGRYVDA PSREELERYF HLSDDDHKIL LPLRGEHNRL GYATQLTSIR YLGTFPDDFS AVPQEVLQAL SRQLGITDPT CIQAYAETRQ RQRHAAEIQE RYGYRVFADS SVGFRLARWL YALCWTGTDR PGELFNRATT WLLTHKVLLP GVTVLERFIA QLRSRVEERL WLTLGRSVSE AQRQQLQDLL LVAEGNRSSR LDQLRSGPVM VSGPALIRAL RRLDDVRGIG IALPAAAHIP PSRIAALARF ANTAKVTAIN RLPASRRMAT LVAFALCLEA TAHDDALEVL EALLRDLFSN AEKADKKARM RSLKDLDRSA ATLAAACKVV LDSSISDDKV RARLFNDLPR ASLEKALEDV NALIRPVDDV YFLALEARYR SVRRFLPDLL KHIRFGFSPA GKGVVAGLDW LQLNLPRRKP EDDAPQEIVA KAWQKHITRE DGSLDMGAYV FCTLDALRTA LRRRDVFVSP SWRYADPRLG LLDGAEWLAA RPIICRSLGL TIDAGTTLDA LSAELDATWQ AVAARLPDNP AIQLSENREG KTELSLGTLS KLEEPNSLLQ LRAAVADLMP RVDLPEILLE IAARTGFAEA FTHVSERNAR ADNLVTSLCA VLLGGACNTG LEPLIRTDNQ ALRRDRLSWV SQNYIRDDTL SVANAILVGA QSQLELAQVC GGGEVPPADG MRFVVPVRTV HAGPNPKYFG TGRGVTWYNL ISDQFSGLNA ITVPGTLRDS LVLLAVVLEH ETELQPTQIM TDTGVYSNVV FGLFRLLGYH FSPRLADVGG TRFWRTRPEA DYGKLNGLAR QSVKLDLIAE HWDDLLRLAG SLKLGRVPAT GIMRTLQTGD RPTRLAQALA EFGRIEKTLH TLTYIDDESK RRATLTQLNR GEGRHSLARP VFHGKRGELR QRYREGQEDQ LGPLGLVVNI IVLWNTLYMT AAVERLRQHG YPVLEEDVAR LSPLIHEHIN MLGRYSFAVP EEVTRGELRP VRNPDDDQ
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
urf-2-CAC80083.1 |
Urf-2-CAC80083.1 |
Tn5046 |
339 |
4956-5294 |
- |
Class: | Passenger Gene |
Sub Class: | Hypothetical |
Protein Sequence:
|
MTRSEHGATT TAELGWEAAG RSALSHGGKA LLPFLGHGGT PIMNTNNTST ISCCECCKDI PLDAALTPEG SEYVVHFCGL ECYQRFMSRA DKRAASEPDH PCTQKVSTRQ DG
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
urf-1-CAC80082.1 |
Urf-1-CAC80082.1 |
Tn5046 |
237 |
5291-5527 |
- |
Class: | Passenger Gene |
Sub Class: | Hypothetical |
Protein Sequence:
|
MRNAVHVESS KVFRWRAYTW GVLAALTCPC HLPVLALLLS GTAAGAFVSE QWSLATLVLA VFFILFLRAA LQAFRKRP
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
merD |
MerD |
Tn5046.1 |
366 |
5520-5885 |
- |
Class: | Passenger Gene |
Sub Class: | Heavy Metal Resistance |
Target: | Mercury |
Comment: | transcriptional repressor |
Protein Sequence:
|
MMNAYTISRL AEDAGVSVHV GRDYVLRGLL HPARRTESGY GIFDERSLAR LRFVRAAFES GIGLDELARL CRALDADDGA DLIGCVECLL RLVTARQAAL AAVATQLAGL THCAGEGSAY A
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
orfY-WP_004574523.1 |
OrfY-WP_004574523.1 |
Tn5046 |
417 |
5882-6298 |
- |
Class: | Passenger Gene |
Sub Class: | Hypothetical |
Protein Sequence:
|
MNDTASDLGS RDSLRKTWQV ISLWGLPAVV ATIALVLADR RPALFLAASA ALLVMGGACL VNAARCRRLH CYITGPYFLM LALGALLAYG FAPNGEYHSR LWLLLALGVT PLLIWLPERL AGRKYLSALV CGEDRECR
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
merA |
MerA |
Tn5046.1 |
1683 |
6319-8001 |
- |
Class: | Passenger Gene |
Sub Class: | Heavy Metal Resistance |
Target: | Mercury |
Comment: | mercuric ion reductase |
Protein Sequence:
|
MTKLQIVGMT CASCVEHVKE ALEKIPGVHR ADVSYASGKA ELKVDEGVSR EQMQAAVEAL GYRAAFEDAT APTRSGLLDK ARGWLSGSIG AGKDGDRLHV AVIGSGGAAM AAALKAVEGG ARVTLIERGI IGGTCVNVGC VPSKIMIRAA HVAHLRRESP FDAGLSTTSL TVLRERLLAQ QQGRVDELRH AKIEGILEST PAITLVRGTA RFQDGRTLSV ELAEGGERIV AFDRCLIATG ASPAVLPIPG LKDTPYWTSD EALASDTIPK RLAVIGSSVV AVELAQAFAR LGSKVTVLAR STLFFREDPA IGEALTAAFR MEGIEVLEHT QASQVSHVDG EFILSTNHGE LHADRLLVAT GRTPNTQGMN LQGAGVKLDE RGAIQIDSGM RTSAPDIYAA GDCTDQPQFV YVAAAAGTRA ALNMTGGEAK LNLDAMPAVV FTDPQVATVG YSEAEAHHAG IETDSRTLTL DNVPRALANF DTRVSSSWSS EEGSGRLIGV QAVAPEAGEL IQTAAIAIRA RMTVQELADQ LFPYLTMVEG LKLAAQTFAK DVKQLSCCAG
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
merC |
MerC |
Tn5046.1 |
432 |
8014-8445 |
- |
Class: | Passenger Gene |
Sub Class: | Heavy Metal Resistance |
Target: | Mercury |
Protein Sequence:
|
MANPFNLFTR IGDKAGSVGV LISAIGCASC FPALAGLGAA IGLGFLSQWE GLFITTLLPL FAGLALLVNA LGGFSHRQWR RAAPGLIGPA LVLIAVYLML AHGWRSGWLL YIGLALMFGV SIWDLVSPAH RRCSPTSCPT PPK
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
merP |
MerP |
Tn5046.1 |
279 |
8458-8736 |
- |
Class: | Passenger Gene |
Sub Class: | Heavy Metal Resistance |
Target: | Mercury |
Comment: | periplasmic mercuric ion binding protein |
Protein Sequence:
|
MKKLLASFAL ATLVAAPAWA ATQTVTLAVP GMTCAACPIT VKKALTKVEG VTKAEVSYEN REAIVTFDDA KTNVQALTKA TEDAGYPSSV KQ
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
merT |
MerT |
Tn5046.1 |
351 |
8750-9100 |
- |
Class: | Passenger Gene |
Sub Class: | Heavy Metal Resistance |
Target: | Mercury |
Comment: | periplasmic mercuric ion binding protein |
Protein Sequence:
|
MSEPSNGRAP LVAGGLAAIL ASTCCLGPLV LIALGFSGAW IGNLTVLEPY RPLFIGAALV ALFFAWRRIF RPAQVCFPGE VCAVPQVRTT YKLLFGLVTA LVLVALGFPY ILPLFY
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
merR |
MerR |
Tn5046.1 |
420 |
9172-9591 |
+ |
Class: | Passenger Gene |
Sub Class: | Heavy Metal Resistance |
Function: | repressor |
Target: | Mercury |
Protein Sequence:
|
MENTVESLTI GAFAKAAGVN VETIRFYQRK GLLPEPDKPY GSIRRYGEAD VARVKFVKSA QRLGFSLDEV AGLLRLDDGA HCDEARVLAE QKLEDVRGKL ADLRRIVSVL ARLVHDCCAS HGSVSCPLIV SLQGEKELR
|
|
References |
|
|
Mindlin S, Kholodii G, Gorlenko Z, Minakhina S, Minakhin L, Kalyaeva E, Kopteva A, Petrova M, Yurieva O, Nikiforov V. Mercury resistance transposons of gram-negative environmental bacteria and their classification. Res Microbiol. 2001 Nov;152(9):811-22. doi: 10.1016/s0923-2508(01)01265-7. PubMed ID: 11763242
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