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Internal Transposable Elements | |
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| Name: Tn502 |
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| Family: Tn402 Group: Tn5053 |
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| Evidence of Transposition: Yes |
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| Host |
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| Host Organism: | Pseudomonas aeruginosa RM1 | Molecular Source: | plasmid pVS6 |
| | Date of Isolation: | 1989 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAATT GACGGGGCGT AACGCCAGAT GTGCAGGCGA CTCCTGACAA CGCAATATCA GAAGTCATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGTG AGCATGGCGT CAGACACATC ATTGATTGCC GAGCAAGGCG TGGCCACCCT GCCCGATGCG 200
GCTTGGGCGC AGGCCCGGCA ACGGGCGGAA ATCATCGGGC CGCTGGCAGC GCTTGATGTG GTCGGGCATG AAGCCGCCGA TGCCGCTGCT CACGCGCTTG 300
GCCTGTCCAG GCGGCAGGTG TATGTCCTAA TCCGCCGTGC CCGGCAAGGT GCTGGGCTTG TGACGGACCT GGCTCGCAGC CGATCCGGCG GCGGAAAAGG 400
CAAGGGACGC TTGCCGGAAT CAGTTGAGCG CATCATCCGC GAGTTGCTGC AAAAGCGCTT CCTGACCAAG CAGAAGCGTA GCCTGGCAGC GTTCCACCGC 500
GAGGTCGCGC AGGCTTGCAA AGCGCAAAAG CTGCGGGCGC CGGCGCGCAA CACCGTGGCT CTGCGGATCG CCGGCCTCGA TCCGCTCAAG GCCACTCGCC 600
GCCGGGAAGG TCAGGATGCG TCCCGCAGCC TGCAAGGTGT CGGTGGTGAG CCTCCCGCCG TGACCGCGCC ACTGGAACAA GTGCAGATTG ATCACACGGT 700
CATCGACCTG ATCGTGGTGG ACGAGCGCGA CCGGCAACCG ATTGGCCGTC CGTATCTGAC CATCGCCATC GACGTGTTTA CCCGCTGCGT GCTCGGCATG 800
GTCGTCACGC TGGAAGCGCC GTCATCTGTT TCGGTCGGCC TGTGCCTTGT GCATGTCGCC TGCGACAAGC GTCCCTGGCT GGAGGGTCTG AACATAGAAA 900
TGGAGTGGCC GATGAGCGGC AAGCCCAGGC TGCTCTACCT GGACAACGCG GCCGAGTTCA AGAGCGAAGC GCTACGCCGA GGCTGCGAGC AGCATGGCAT 1000
CCGGCTTGAC TATCGCCCGC TCGGGCAGCC GCACTACGGC GGCATCGTGG AACGGATCAT CGGCACGGCG ATGCAGATGA TCCACGACGA ATTGCCAGGG 1100
ACGACCTTCT CCAACCCTGA CCAGCGCGGC GACTACGATT CCGAAAACAA GGCCGCCCTG ACGCTGCGTG AGCTGGAGCG CTGGCTCACA TTGGCGGTCG 1200
GCACCTACCA CGGCTCCGTG CACAACGGCC TGCTCCAGCC GCCGGCAGCG CGCTGGGCCG AAGCTATCGC GCGGACCGGC GTGCCAACCG TCATCACTCG 1300
CACCACGGCT TTTCTGGTCG ATTTTCTGCC CATCATCCGC CGCACGCTGA CCCGCACCGG CTTCGTCATC GACCACATCC ATTACTACGC CGATGCGCTC 1400
AAGCCGTGGA TAGCTCGGCG CGACCGCTTG CCTGCGTTCC TGATCCGGCG CGACCCGCGC GACATCAGCC GCATTTGGGT GCTGGAGCCG GAGGGGCAGC 1500
ACTATCTGGA AATTCCATAC CGCACCTTGT CGCACCCGGC TGTCACCCTC TGGGAACAAC GACAGGCGCT GGCGAAATTG CGGCAGCAAG GGCGCGAACA 1600
GGTGGATGAG TCGGCGCTGT TTCGCATGAT CGGCCAGATG CGCGAAATCG TGTCCACCGC GCAGAAAGCT ACGCGCAAGG CGCGGCGCGA CGCGGATCGA 1700
CGCCAGCATC TCAAGGCAAC GGCAGTTCTT TTCAAAACCA CGCCACCACC GGACGCGGAC ATGGCTGACC CGCAGGCAGA CAACCAGCCA CCTGCCAAAC 1800
CGTTCGACCA GATTGAGGAG TGGTAGCCGT GGAAGAATAT CCCATCATCG ACTTGTCCCA CCTGATGCCG GTGGCCCAGG GCTTGGCCCG TCTTCCGGCG 1900
GACGAACGCA TCCATCGCCT TCGCGCTGAC CGCTGGATCG GCTATCCGCG AGCAGTCGAG GCGCTGAATC GGCTGGAAGC CCTGTATGCG TGGCCGAACA 2000
AACAACGCAT GCCCAACCTG CTGTTGGTCG GTCCAACCAA CAACGGCAAG TCGATGATCG TCGAGAAATT CCGCCGCACC CACCCGGCCA GCTCCGACGC 2100
CGACCAGGAG CACATTCCGG TACTGGTCGT GCAGATGCCA TCCGAACCGT CGGTAATCCG CTTCTACGTC GCGCTACTTG CCGCGATGGG CGCGCCATTG 2200
CGCCCGCGCC CACGGCTGCC GGAAATGGAG CAATTGGCGC TGGCACTGCT ACGCAAGGTC GGCGTGCGCA TGCTGGTGAT CGACGAATTG CACAACGTCC 2300
TGGCCGGCAA CAGCGTCAAC CGCCGGGAAT TCCTCAACCT GCTGCGTTTC CTCGGCAACG AGCTGCGCAT CCCGCTGGTC GGGGTCGGCA CACGCGATGC 2400
CTACTTGGCG ATCCGCTCGG ACGACCAGTT GGAAAACCGC TTCGAGCCGA TGATGCTGCC GGTGTGGGAG GCCAACGACG ATTGCTGCTC ACTGCTGGCC 2500
AGCTTCGCGG CTTCGCTCCC GCTGCGGCGA CCCTCGTCGA TTGCCACGCT GGATATGGCC CGCTACCTGC TCACGCGCAG CGAGGGCACC ATCGGCGAGC 2600
TGGCGCACCT GTTGATGGCG GCGGCCGTCG CTGCCGTGGA GAGCGGTGAG GAAGCGATCA ACCATCGCAC GCTCAGCATG GCCGATTACA CCGGTCCCAG 2700
CGAGCGGCGG CGGCAATTCG AGCGGGAACT GATGTGAAGC CAGCGCCACA CTGGCCACTG CATCCGGCTC CCAGGGAAGG CGAAGCCTTG TCTTCGTGGC 2800
TCAACCGCGT GGCCCTTTGC TATCACATGG AGGTGTCCGA GCTGCTGGAG CACGATCTTG GTCACGGCCA GGTTGATGAC CTGGACACCG CGCCACCACT 2900
GGCGCTGCTG GCGATGCTCT CCCAGCGGAG CGGCATCGAG CCGGACCGGC TGCGTTGCAT GAGTTTCGCC GGCTGGGTGC CTTGGCTACT GGACAGCCTT 3000
GATGATCAGA TTCCAGACGC ATTGGAAACC TATGCGTTCC AGCTCTCGGT GCTGCTGCCG AAACTCCGCC GTAGGACGCG ATCCATCACG AGCTGGCGTG 3100
CCTGGCTGCC CAGCCAGCCG ATACATCGCG CCTGCCCGCT CTGTCTGAAC GACCCGGCAA ACCAAGCCGT ACTGCTTGCA TGGAAGCTGC CCCTGATGCT 3200
GAGCTGCCCG CTGCATGGCT GCTGGCTGGA ATCCTATTGG GGCGTGCCTG GGCGGTTTCT CGGCTGGGAG AACGCCGACA CTGCGCCGCG CACCGCCAGC 3300
GACGCGATTG CGGTGATGGA CCGGCGCACC TGGCAGGCAC TGACGACCGG CCATGTGGAG CTGCCGCGCC GACGCATCCA CGCTGGATTG TGGTTTCGGC 3400
TACTACGCAC GCTGCTCGAT GAGCTGAACA CCCCGCTTTC GACGTGCGGA ACCTGCGCGG GGTATCTCCG CCAAGTCTGG GAAGGCTGCG GGCATCCGCT 3500
GCGTGCTGGG CAAAGTCTGT GGCGACCGTA TGAAACCCTG AACCCGGCAG TACGGTTGCA GATGCTGGAG GCGGCGGCAA CGGCAATCAG CTTGATTGAG 3600
ATGAGGGATA TAAGCCCGCC GGGCGAGCAT GCAAAGCTGT TCTGGTCCGA ACCCCAAACC GGTTTCACCA GTGGCCTGTC GGCGAAAACG CCGAAGCCCG 3700
AACCCGTCGA TCACTGGCAA CGGGCAGTCC AGGCCATCGA TGAGGCCATC ATTGAAGCGC GGCACGACCC CGAGACGGCA CGCTCGCTGT TCGCGTTGGC 3800
TTCCTATGGT CGGCGCGACC CCGCTTCCCT GGAACAGTTG CGCGCCACCT TCGCAAAGGA AGGCATCCCC CCGGAATTCC TGTCACATTA CGTGCCTGAT 3900
GGACCCTTTG CATGTCTTAG ACAGAATGAC GGGTTAAGTG ACAAATTTTG ACGACCAGAA CTTTCCGGTG CACACTGTCA CATAATCGAA CGTATATGTG 4000
ACAGGTGCAA GATGCTGATT GGCTACATGC GGGTGTCGAA GGCGGACGGC TCCCAAGCAA CCGATTTGCA GCGCGACGCG CTGATCGCCG CCGATGTCGA 4100
TCCGGTGCAT CTCTACGAAG ATCAGGCATC TGGCAAGCGC GAAGACCGCC CCGGCTTGGT GGCCTGCCTG AAGGCATTGC GGCCGGGAGA TACGCTGGTC 4200
GTGTGGAAAC TGGATCGGCT CGGGCGCGAC CTGCGGCATC TAATCAATAC CGTGCACGAC CTGACCGGGC GCGGTATCGG CCTGAAGGTG CTGACCGGGC 4300
ACGGGGCGGC CATCGACACC ACAACCGCCG CCGGCAAACT GGTCTTCGGC ATTTTTGCTG CGCTGGCCGA GTTCGAGCGC GAATTGATCG CCGAGCGCAC 4400
GATTGCCGGT CTGGCATCGG CGCGGGCACG CGGCCGAAAA GGCGGCCGGC CGTTCAAGAT GACCGCCGCC AAGCTGCGGC TGGCGATGGC GGCGATGGGG 4500
CAGCCTGAAA CCAAGGTCGG CGATCTCTGT CAGGAACTCG GCATCACGCG GCAGACGCTC TACAGACACA TTTCCCCAAA AGGCGAATTG CGCCCAGATG 4600
GGACGAAACT ACTCAACCGT ATCTGAACGG TCGGCATCAA CCTGACGGCG GCGAATCGCA AGTGTTTTGT TCGGCGCTGG TTTCGGTCGC GGCCTTGGCG 4700
CGTGCCTGGA AGCGCTGATA GCACTCCAGT CCGCAGAAGT GCTCGACGTA CTCCACGCCT TCCGGGGTAA AGGCGGCATC GAGCGGGATT TCCTTGCAGC 4800
ACACGCAGCA ACTGGTGGCA GTCGGATCAT TTGCATTCAT GGTGGCACCC CTCCATTGAC TGACAAAGGC GGCGAATGCC GCCGCCGGCA TTGGCTTGGC 4900
GAACAGGAAG CCTTGTCCCG TATCGCACGC CGCTTGCCGC AACAGTGCGA GACTGGTCGG CGTTTCCACG CCCTCGGCCA CCACGTCCAT GCCCAGCCCG 5000
TGCGCAAGCT GAATGACGGA GCGCACGATG GTTCGGTCGC GGTGGTCGTC GGCGAGTCCG GCGACGAAGG ACTGGTCGAT CTTGAGCGTA GTAATCGGGC 5100
AGCACTTCAG GTGTTGCAGG CAGGAATACC CCGTCCCGAA ATCATCGGCG GCGAAGCGCA CACCGATTTG TCGCAAGGCT TCCAGGGCGG GGAAGATCGC 5200
CGGATCACCG AACGCGACCG ATTCGGTCAG CTCGATTTCA AGAGACTCGG CGGGCAACTC GGCGTCAGCC AGCACGCCCT TTACCCATCC GTCGAAATCC 5300
GGTCTCACTT GGCTCGCCGA AACATTGACG GCCAGCCGGA ACGGTTGCCA TGCCAGCATC CGCCACTCGC GCATCTGGCG GCAGGCTGCG CCCAGCACCC 5400
AAGCACCGAT TTCAGGCATC AAGCCGGACG ATTCGACCAA GGGGAGAAAC TGGCCCGGCA GCAACAAGCC GAGCCTTGGG TGCCGCCAGC GCAACAGGGC 5500
TTCCGCACCG ACAATCTGGT CACTGCGCAG ATCGACTATC GGCTGGTAGT GCAACTCAAG CTGCCCGCGC ACAACCGCCT GCGCCAACTC GGTCGCCGTC 5600
CATCCGGCGG GCTGCGAGGT CGTCATGATC CGCCCCGGAA GGCCCGCAGT AGCCGCGTCA CGGACAGAGC AAACAAGCCG GTCAGCGTGA GGGCTGCAAT 5700
ACCCCAATGC TCCCCGATGA ATGCGCCGGC TGTCGTTCCG GCCAGCACAA CGGCGAGAAT CGGCAAATGA CAGGGACAGG TGAGCACGGC CAGCGCGCCC 5800
CACAGGTAGC CGGTGAACGG CTTGCGTGTC TTGGTCGGCA GGCGTTCCGG GCCGTTCATG GCAGACTCTC CGCGTGCTGT GCCGGCTCGG TCGGCAGGGT 5900
GGCCAACTGC GCTTCCAGAT CGGCCAACGC TTCGCGCCGG TGTTCGACGA ACTGGCGCAG CACGGCAAGC TGCGTGGCCG CTTCGCCGCC GTCCGCTGCA 6000
TCCAGCGCCC GGCACAGCCT CGCCAGCGCA TCGAGGCCGA TGCCCGCTTC GAAGGCGGAT CGCACGAAGC ACAGACGCTG CAAGGCCGCC TCGTCGAACA 6100
GGCCGTAGCC GCCTGGCGTG CACGCCACCG GCCGCAGCAG TCCGCGCAGC AGGTAGTCGC GCACGATATG CACGCTCACC CCGGCATCAA GGGCCAGCCG 6200
GGACACCGTG TAGGCGTTCA TCGAACACCT CCTTTTTCTC ACCCGGCGCA GCAGGAAAGC TGCTTCACAT CCTTGTTGAA GGTCTGCGCC GCGAGCTTCA 6300
AGCCCTCGAC CATCGTCAGG TAGGGGAACA ACTGGTCGGC CAGTTCCTGC ACCGTCATGC GGTTGCGAAT GGCCAGGGCC GCCGTCTGGA TCAGCTCGCC 6400
GGCTTCCGGT GCAACCGCCT GCACGCCGAT GAGCCGTCCG CTGCCTTCTT CAACGACCAG CTTGATGAAG CCGCGTGTGT CGAAGTTGGC GAGCGCGCGC 6500
GGCACGTTGT CCAGCGTGAG CGTACGGCTG TCGGTCTCGA TGCCGTCGTG GTGCGCTTCC GCCTCGCTGT AGCCCACGGT GGCCACCTGC GGGTCGGTGA 6600
ACACCACGGC CGGCATGGCG GTCAGGTTCA GGGTAGCGTC GCCACCGGTC ATGTTGATCG CGGCACGGGT GCCGGCCGCC GCTGCCACAT AGACGAACTG 6700
CGGCTGATCG GTGCAGTCGC CGGCGGCGTA GATGTTGGAG CTACTCGTGT GCATTCCTTG GTCGATGACG ATCGCACCTT GCTTGTTCAC CATCACGCCT 6800
GCCACGTCCA GTGCCAGGCT GCGCGTGTTG GGTGCACGGC CGGTGGCGAC CAGCAGCTTG TCGGCGCGCA GTTCGCCGTG CGCCGTGGTG AGCACGAATT 6900
CGCCGTCCCT TTCACCATTG ATGTACGCGA CCTGGCTGGC CTGGGTGTGT TCCCTCACCT CGATGCCTTC GGCACGGAAC GCGGCCGTGA CGGCTTCGCC 7000
GATGGCCGGG TCTTCGCGGA AGAACAGCGT GCTGCGCGCC AGGATCGTCA CCTTCGCTCC GAGTCGAGCG AACGCCTGCG CCAGCTCCAG CGCCACCACC 7100
GATGAGCCAA TTACGGCCAG GCGCTTAGGG ATCGTTTCGC TGACCAGTGC CTCAGTGGAA GTCCAGTAAG GGGTGTCTTT CAGGCCGGGA ATCGGCGGCA 7200
CGGCCGGACT CGCGCCGGTG GCGACCAGAC AGCGGTCAAA CGTCACCATG CGCTCACTGC CGCCGTTGAG TTGCACGACC AGGTTGCGGT TGTCTTTGAA 7300
GCGGGCAGCG CCATGCAGCA CGGTAATGGC CGGGTTGCCC TCCAGGATGC CTTCGTATTT GGCGTGACGC AGTTCATCGA CGCGGGCCTG CTGCTGGGCC 7400
AGCAGCGCCG TGCGCTGGAT GACCGGCGCT ACCGCTTGGA TGCCGTTGTC GAACGGGCTT TCCCGGCGCA GGTGGGCGAT ATGGGCGGCG CGGATCATGA 7500
TCTTCGACGG CACGCAGCCG ACATTGACGC AGGTGCCGCC AATCGTGCCG CGCTCGATCA GCGTGACGCG TGCGCCCTGC TCGACGGCCT TCAGTGCTGC 7600
CGCCATTGCG GCCCCGCCGC TGCCGATCAC GGCGACATGG AGCTTTCCAC TATCCCCGCC AGCCTTGTCA TCACTGCCCA GCCATTCGCG CACCTTGCCG 7700
AGCAATCCGC CGCCCGCCGG AGCCACGGGC GCATCGGCAA GCGTAGCCCG ATAGCCGAGT CCGGCCACGG CAGCGGTCAG CGTATCCGGC AATGTGCCGG 7800
CCTCGATGGC GAGCCTGGCG CTGCCCTTGG CATAGGAAAC CTCCGCCGAT TGCACGCCGG GCACTTTCTC CAGAGCCTCC TTGACGTGAA CCGCGCAGGA 7900
GTCGCAGGTC ATGCCGGTAA TTTTGAGGGT GGTCATTAAT CGTTCCTTTT CTGTATTGGC TGCCGGCTCC CGCCGTCAGC CTTGTTTCGT GGGAAGTTCG 8000
CAACCGTCCG GGCCGCAACG GCGATTTGCC GGCGAAACCA AGTCCCAGAT CGACACGCCG ACCATCAGCG CCAGGCCGGT GTATACGAGG TGTGCTGCCC 8100
ACCAGTTGCC AAGCAGCCAG ACAGTTCCGG CGAACACGAT GGCTGGCCCG ATCATGCCGA GCAGACTGCG GTGCCATTGG CGATGACTGA GCCAGCCCAA 8200
TGCGTTCGCC AGCAAAGCCA CGACAGCGAA CAGCGGCAGC AGCTTGGAGA TGAACAATCC TTCGTATTCC TGTAGAAAGC CCAGGCCGAT GGCCGCGCCC 8300
AAGCTGGCGA TGGCCGGAAA GCACGCGGCG CAACCCATCG CGGAAACAAC GCTGCCGAGC GCCCCAGGTT CGGGTTCAGT GGTTCACTGC TTGACGCTGG 8400
AGGGATAGCC CGCATCGGTG GTTGCTTTGG TGAGCTTCTG GACGCTGGTC TTGGCATCAT CGAAAGTGAC AACCGCTTCG CGGGTCTCGA AGGTCACGTC 8500
AACCTTGCTG ACGCCTTCGA CCTTGGAAAT CGCCTTCTTG ACGGTGATCG GGCAGGCGGA GCAGGTCATG CCCGGTACGG ACAGCGTGAC GGTCTGAGTG 8600
GCGGCCCACA CGGGGGCAAC AATGGCGGCG AGGGCGAGGG AGGCAAACAG TTTTTTGGCT TGCGCCGAAA CTTGCGTTTT CATGGTGAAC TCCGATCAGT 8700
AGAAAAATGG CATGACGTAG GGAAATCCGA GTGCGACCAG GACCAGCACG GCCACGACCC AGAAAATGAG CTTGTAAGTC GCTCGCATTT GGGGAATCGC 8800
GCAGACCTCA CCCGGTTTGC AGGCTTGCGT AGGGCGGTAG ATGCGCCGCC AGGCGAAGAA CAACGCCACC AGCGCTGCGC CGATGAAAAT CGGGCGATAC 8900
GGCTCCAGCA CGGTCAGGTT GCCGATCCAT GCCCCGCTGA AGCCCAAGGC AACCAGAACC AGCGGCCCGA GGCAGCAGGT CGAGGCGAGG ATGGCAGCTA 9000
GCCCGCCAGC GAAGAGCGCG CCGCGCCCGT TTTGTGGTTC AGACATGCGC TTGTCCTTTC GAATTTGAAT TGGATAGCGT AACCTTACTT CCGTAGTCAT 9100
GTACGGAGTC AAGTGGTATG GAAAAGAATT TGGAAAACCT GACCATTGGC GTTTTTGCCA AGGCGGCCGG GGTCAATGTA GAGACCATCC GGTTCTACCA 9200
GCGCAAGGGC TTGTTGCCGG AACCGGACAA GCCTTACGGC AGCATTCGCC GCTATGGCGC GGCGGATGTA ACGCGGGTGC GCTTTGTAAA GTCGGCCCAG 9300
CGGCTGGGCT TCAGCCTGGA TGAGATTGCC GAGCTGTTGC GGCTCGACGA TGGCACCCAC TGCGAGGAAG CCAGCAGCTT GGCTGAGCAC AAGCTCCAAG 9400
ACGTGCGCGA AAAGATGGCC GACCTGGCGC GCATGGAGGC CGTCCTGTCT AATCTTGTGT GCGCCTGCCA TGCCCGAAAG GGGAATGTTT CGTGCCCGCT 9500
GATTGCGTCG CTACAGGGCG AAACAAGCTT GGCAAGGTCG GAGACGCCTT AGCGTGCTTT ATTTTCCGCT TTCTGAAACA TCCCCAGCAT CAGAAAAGAC 9600
CGTGCAGCCG ACTTTTGACA TTGTGTGCAA TCGTCTTCTG AAAATGACA
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| repeat t3 |
78-97 |
20 |
TCAGAAGTCA TCTGCACCAA |
| r3 |
3931-3944 |
14 |
GGGTTAAGTG ACAA |
| res |
3972-4006 |
35 |
ACACTGTCAC ATAATCGAAC GTATATGTGA CAGGT |
| r2 |
3975-3988 |
14 |
CTGTCACATA ATCG |
| r1 |
3991-4004 |
14 |
CGTATATGTG ACAG |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tniA |
Tn502 |
144-1826 |
Transposase |
|
+ |
| tniB |
Tn502 |
1829-2737 |
Accessory Gene |
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+ |
| tniQ |
Tn502 |
2734-3951 |
Accessory Gene |
Target Site Selection |
+ |
| tniR |
Tn502 |
4012-4626 |
Accessory Gene |
Resolvase |
+ |
| urf2 |
Tn502 |
4637-5572 |
Passenger Gene |
Other |
- |
| merE |
Tn502 |
5623-5859 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merD |
Tn502 |
5856-6221 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merA |
Tn502 |
6239-7936 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merC |
Tn502 |
7976-8338 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merP |
Tn502 |
8384-8656 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merT |
Tn502 |
8696-9046 |
Passenger Gene |
Heavy Metal Resistance |
- |
| merR |
Tn502 |
9118-9552 |
Passenger Gene |
Heavy Metal Resistance |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniA |
TniA |
Tn502 |
1683 |
144-1826 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
| Comment: | homologous to TnsB of Tn7 |
Protein Sequence:
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MASDTSLIAE QGVATLPDAA WAQARQRAEI IGPLAALDVV GHEAADAAAH ALGLSRRQVY VLIRRARQGA GLVTDLARSR SGGGKGKGRL PESVERIIRE
LLQKRFLTKQ KRSLAAFHRE VAQACKAQKL RAPARNTVAL RIAGLDPLKA TRRREGQDAS RSLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDERDRQPI
GRPYLTIAID VFTRCVLGMV VTLEAPSSVS VGLCLVHVAC DKRPWLEGLN IEMEWPMSGK PRLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WAEAIARTGV PTVITRTTAF LVDFLPIIRR
TLTRTGFVID HIHYYADALK PWIARRDRLP AFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALAKLR QQGREQVDES ALFRMIGQMR
EIVSTAQKAT RKARRDADRR QHLKATAVLF KTTPPPDADM ADPQADNQPP AKPFDQIEEW
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniB |
TniB |
Tn502 |
909 |
1829-2737 |
+ |
| Class: | Accessory Gene |
| Transpoase Chemistry: | Serine |
| Comment: | homologous to TnsC protein of Tn7 putative ATP-binding protein |
Protein Sequence:
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VEEYPIIDLS HLMPVAQGLA RLPADERIHR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLVGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSSIAT LDMARYLLTR SEGTIGELAH LLMAAAVAAV ESGEEAINHR TLSMADYTGP SERRRQFERE
LM
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniQ |
TniQ |
Tn502 |
1218 |
2734-3951 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Target Site Selection |
Protein Sequence:
|
MKPAPHWPLH PAPREGEALS SWLNRVALCY HMEVSELLEH DLGHGQVDDL DTAPPLALLA MLSQRSGIEP DRLRCMSFAG WVPWLLDSLD DQIPDALETY
AFQLSVLLPK LRRRTRSITS WRAWLPSQPI HRACPLCLND PANQAVLLAW KLPLMLSCPL HGCWLESYWG VPGRFLGWEN ADTAPRTASD AIAVMDRRTW
QALTTGHVEL PRRRIHAGLW FRLLRTLLDE LNTPLSTCGT CAGYLRQVWE GCGHPLRAGQ SLWRPYETLN PAVRLQMLEA AATAISLIEM RDISPPGEHA
KLFWSEPQTG FTSGLSAKTP KPEPVDHWQR AVQAIDEAII EARHDPETAR SLFALASYGR RDPASLEQLR ATFAKEGIPP EFLSHYVPDG PFACLRQNDG
LSDKF
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniR |
TniR |
Tn502 |
615 |
4012-4626 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
| Comment: | also called TniC |
Protein Sequence:
|
MLIGYMRVSK ADGSQATDLQ RDALIAADVD PVHLYEDQAS GKREDRPGLV ACLKALRPGD TLVVWKLDRL GRDLRHLINT VHDLTGRGIG LKVLTGHGAA
IDTTTAAGKL VFGIFAALAE FERELIAERT IAGLASARAR GRKGGRPFKM TAAKLRLAMA AMGQPETKVG DLCQELGITR QTLYRHISPK GELRPDGTKL
LNRI
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| urf2 |
Urf2 |
Tn502 |
936 |
4637-5572 |
- |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Sequence Family: | EAL (Pfam:PF00563)||DUF3330 (Pfam:PF11809) |
Protein Sequence:
|
MRGQLELHYQ PIVDLRSDQI VGAEALLRWR HPRLGLLLPG QFLPLVESSG LMPEIGAWVL GAACRQMREW RMLAWQPFRL AVNVSASQVR PDFDGWVKGV
LADAELPAES LEIELTESVA FGDPAIFPAL EALRQIGVRF AADDFGTGYS CLQHLKCCPI TTLKIDQSFV AGLADDHRDR TIVRSVIQLA HGLGMDVVAE
GVETPTSLAL LRQAACDTGQ GFLFAKPMPA AAFAAFVSQW RGATMNANDP TATSCCVCCK EIPLDAAFTP EGVEYVEHFC GLECYQRFQA RAKAATETSA
EQNTCDSPPS G
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merE |
MerE |
Tn502 |
237 |
5623-5859 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
| Comment: | Broad-spectrum mercury transporter |
Protein Sequence:
|
MNGPERLPTK TRKPFTGYLW GALAVLTCPC HLPILAVVLA GTTAGAFIGE HWGIAALTLT GLFALSVTRL LRAFRGGS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merD |
MerD |
Tn502 |
366 |
5856-6221 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | secondary regulatory protein |
| Target: | Mercury |
Protein Sequence:
|
MNAYTVSRLA LDAGVSVHIV RDYLLRGLLR PVACTPGGYG LFDEAALQRL CFVRSAFEAG IGLDALARLC RALDAADGGE AATQLAVLRQ FVEHRREALA
DLEAQLATLP TEPAQHAESL P
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merA |
MerA |
Tn502 |
1698 |
6239-7936 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
Protein Sequence:
|
MTTLKITGMT CDSCAVHVKE ALEKVPGVQS AEVSYAKGSA RLAIEAGTLP DTLTAAVAGL GYRATLADAP VAPAGGGLLG KVREWLGSDD KAGGDSGKLH
VAVIGSGGAA MAAALKAVEQ GARVTLIERG TIGGTCVNVG CVPSKIMIRA AHIAHLRRES PFDNGIQAVA PVIQRTALLA QQQARVDELR HAKYEGILEG
NPAITVLHGA ARFKDNRNLV VQLNGGSERM VTFDRCLVAT GASPAVPPIP GLKDTPYWTS TEALVSETIP KRLAVIGSSV VALELAQAFA RLGAKVTILA
RSTLFFREDP AIGEAVTAAF RAEGIEVREH TQASQVAYIN GERDGEFVLT TAHGELRADK LLVATGRAPN TRSLALDVAG VMVNKQGAIV IDQGMHTSSS
NIYAAGDCTD QPQFVYVAAA AGTRAAINMT GGDATLNLTA MPAVVFTDPQ VATVGYSEAE AHHDGIETDS RTLTLDNVPR ALANFDTRGF IKLVVEEGSG
RLIGVQAVAP EAGELIQTAA LAIRNRMTVQ ELADQLFPYL TMVEGLKLAA QTFNKDVKQL SCCAG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merC |
MerC |
Tn502 |
363 |
7976-8338 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
| Comment: | mercuric ion transport protein |
Protein Sequence:
|
MGCAACFPAI ASLGAAIGLG FLQEYEGLFI SKLLPLFAVV ALLANALGWL SHRQWHRSLL GMIGPAIVFA GTVWLLGNWW AAHLVYTGLA LMVGVSIWDL
VSPANRRCGP DGCELPTKQG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merP |
MerP |
Tn502 |
273 |
8384-8656 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | mercury transport |
| Target: | Mercury |
Protein Sequence:
|
KKLFASLALA AIVAPVWAAT QTVTLSVPGM TCSACPITVK KAISKVEGVS KVDVTFETRE AVVTFDDAKT SVQKLTKATT DAGYPSSVKQ
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merT |
MerT |
Tn502 |
351 |
8696-9046 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
| Comment: | integral membrane protein |
Protein Sequence:
|
MSEPQNGRGA LFAGGLAAIL ASTCCLGPLV LVALGFSGAW IGNLTVLEPY RPIFIGAALV ALFFAWRRIY RPTQACKPGE VCAIPQMRAT YKLIFWVVAV
LVLVALGFPY VMPFFY
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| merR |
MerR |
Tn502 |
435 |
9118-9552 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Target: | Mercury |
Protein Sequence:
|
MEKNLENLTI GVFAKAAGVN VETIRFYQRK GLLPEPDKPY GSIRRYGAAD VTRVRFVKSA QRLGFSLDEI AELLRLDDGT HCEEASSLAE HKLQDVREKM
ADLARMEAVL SNLVCACHAR KGNVSCPLIA SLQGETSLAR SETP
|
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| repeat t2 |
Tn502 |
49-67 |
TACACGTCCG CTGAGGACT |
| repeat t4 |
Tn5053 |
110-128 |
TCAATACTCG TGTGCACCA |
|
| References |
|
|
| 1. | Stanisich VA, Arwas R, Bennett PM, de la Cruz F. Characterization of Pseudomonas mercury-resistance transposon Tn502, which has a preferred insertion site in RP1. J Gen Microbiol. 1989 Nov;135(11):2909-15. doi: 10.1099/00221287-135-11-2909. PubMed ID: 2559144
| | | 2. | Petrovski S, Stanisich VA. Tn502 and Tn512 are res site hunters that provide evidence of resolvase-independent transposition to random sites. J Bacteriol. 2010 Apr;192(7):1865-74. doi: 10.1128/JB.01322-09. Epub 2010 Jan 29. PubMed ID: 20118251
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