 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Internal Transposable Elements | |
|
|
Internal Repeats | |
|
|
|
|
|
|
|
|
|
|
|
| Name: Tn4662a |
|
| Family: Tn3 Group: Tn3000 |
|
| Evidence of Transposition: no |
|
|
|
| Host |
 |
|
| Host Organism: | Pseudomonas putida HS | Molecular Source: | plasmid pDK1 |
| Place of Origin: | St.Paul Minnesota, U.S.A. | Date of Isolation: | 2018 |
| | Other Geographic Information: | soil 1981 2010 |
|
| Map |
|
| Terminal Inverted Repeats (IR) |
|
|
| | |
| IRL (Length: 38 bp) |  | GGGGATGTAAGCCGGAACCCCAGAAATTTCCGTCACCC |
| IRR (Length: 38 bp) | | GGGGTTGTACGCCGGAATCCCAGAAATTTCCGTCAGCC |
|
| Sequence |
|
|
|
|
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGATGTAA GCCGGAACCC CAGAAATTTC CGTCACCCTA GTTGGGTGGG CTCAACACTC GTGTCACCAG CTACCTTCTG GAGAATCGAG CTCGGCCATC 100
CCTCCCTGGA CGGGCATCGC TCGACGATGT TCAACGGCTC CCTCACGGGG CCGTCGTTTT GTGGGGGCTA TTCCATCCAC AAGTCGTCGA GGTTCTTGAA 200
GTTCCAGAGC GTCGGGTCTT CGGGGCCAGT GATACTGTCC TTGCAACTCG TGGCCGCCAG GTCGATGGTC TGCATCGGGA TCGGCTCTCT CGAGCGTAGC 300
GAGAAGAACA CGCGAACCTT GGGAGTCAGC AGTGATTCCA TTCCCGGCTC AACGACAACG GCCAGACGCT GAGAGGACAG GCGAACCAAG GAGCCGACGG 400
GGTAGATGCC CACGGCCTTG ACGAAGGCGT GGAAGATGCG TTTGTCGAAA TGGCCCTCCC ACTTGGCCAT CTGCCGCATC GCCGCGGACG GGTCCCACGG 500
CTTTTTGTAG GCTCGCTCCG ACGTCACGGC ATCATAGACG TCGCAGATTG CGCCCATGCG GGCCAGGAGT GAAATGGCGT CACCGGCCAA GCGATCCGGG 600
TAGCCGGTTC CGTCGATCTT CTCGTGATGG TGCAGGGCAA TGTCCACCAC CCCGGGCTCG GCCCCGCCTG CGCGCAGCAT CTTTGCGCCC TCCACAGGGT 700
GGCGCTTCAT GATGGCGAAC TCGGCATCGG TGAGCTTGCC TGGTTTGTTA AGCACTTCCA GCGGCATCGC GGCCTTGCCT AGGTCGTGCA TCAGTCCGCC 800
GATGCCAGCC AGGCGCGTTT GCTCCTCGTC TAGATCGAGA TGCCGGGCCA GCGATAGCAT CAGGGCGCAG ACGGCAACCG AGTGCAGGTA GGTGTAATCG 900
TCGTGCGTTT TGATGCGTGC GACGCTGATG AGGGCATGAG GTTGGCGCAG CACCGAGGCA GCGATTTCTC CGACCAGCGG CAACGTCGTG CTTGGGTCGA 1000
CGGCCTTGCC AAGCCGGGCT TCCTGGAACA TGTCCATGAC TTGGGACTTG GCCGCAAGAC AGAGTTTCCG TGCATAACAC ATTTCGCTCT CCATTGAGGT 1100
TGCGCCGTCA CTTTTCTTGC TTAGTGGACT AGACGGCAGA GATTGCTCCT CCGACAATTC TCTGGGCTCT GGGCTCTGGG CTCTGGGCTC TGGGCTCTGG 1200
GCTCTGGGCT CTGGGCTCTC TGGGCTCTCT GGGCTCTCTG GGCTCTCTGG GCTCTCTGGG CTCTCTGGGC TCTCTGGGCT CTCTGGGTCG ACTTGGCTTT 1300
TGGCCAAGTC GACCCAGACC TCCCCGACGC CACATTCTCG AATGGCAGAG AGATCCTGAG GCTCGGTCAG CAGGAAGCTG CCGCGCCAGA ATGGGTGTCG 1400
AACCCAAGAG CCGGCGAGCT TGTGGATGTA CATGCCGAGA CGAAGCTCGG ATACGGGAAT GCGTTTTACC AACTTATTTT CCTTTCTGAG TTGGGTGGTT 1500
AGGCGTGCGC CGAGGCTGGC ACCCAGCGGT AGAGCGGAGG TAAGGTCACG CCAAGATTCT TGGATCAGCC GGAACCGCCG AAATTTCCGT CAGCCGATCA 1600
ACATGGCTTT GTCTCGCGCT CGGTCGATGC GTTCCTGCAT CGCCTGCATG ACTTCTTCGT GGGTGTACGA CTTGGCGTTG GGGTCGTCGG CCTCTCGGAG 1700
AGCTTCCTCG ACCTCGCGGG TCATCCGCGC ATATTCTTCC GGCCACAGCG CTTGCTCCAT GCGCAGCGAC GCCTGCCCAA GCAGGTGCAG CAGGCCGAAC 1800
AGCCGCATGT CATTGGTGGC GACGACGTGC TCTCGAATCC GCTCCTGGAT CACCTCGCAG GCCCGATGCG CCTCTGGCGT CGCCGTGCCC TCGTAGCCGG 1900
CTGGGAGTTC TGCTTCTTCA GCGATTCGCG CCCAAGCGAT AGCCAGCGCC TCGATGGTGG ACAGGTTCAT TTGCTCATCC ACTTGCGCAG CAGACGCTTT 2000
TTCAGGGAGG CGCGCTCTTG CGGATTGCGT CCCTTGTGGT TGGCAATGCG ATCCGCCGTG GCGGCCTGGC GCTTGATGGG CCAGTAGGAG CGGCCATCCT 2100
TACCCATCGA CCAGACGTTG CTGACCTGGT TTTCCAGTAG AGGCAGATGG GCGCATAGAG CTTCCGGCGA CGCGCTGGCC AGCGCGGTGC GCTCGTGGGT 2200
TCGCCAGCGC TGATGCCAGA GTTTCTTGTC CTCGCGCTCG CTACGGCAGG TCGTGTGCCC AACGATGGGC GTTTTGCGGC GGCTGCGGCT CATGATGTGG 2300
TTGTCTCCAA GAACATTCAG GACAGGCTTT CTGGGTAGAG CGCCGTCAAC CGGGACAGGG TTTCTTGCAC TTGTTCCAGC GAGGTCATCA GATGATCAAC 2400
CTGATCCTGA AGATCCACGG CGAGATCAAA TAGCTCAGCC ACTCGGCTGC GTGATCTCTC GTTGAACGCG GCCATTGCCA GTTGATGCAG CTTCAACAGG 2500
TCGGTGCGCA GTTGCGGAGG TGCGCCGTCT GCGCTGTCAT TCAAATCGCC GCGCAGCACG TCCACGGCAT CGACTGCACG CAGCAGTGCC GTGGTATCGA 2600
AATTCTCGGG AGTCAGTTCG TCCCATTCGT CGTCGGTGAT GCGGGCTGCC ATCAGGAGGG CTCCGATTAA GCGGTTGCGA GCGTTAGATG CCCGATCGGC 2700
TCGGCTGCTG GCCGTACCTT GATTTCGATG TCGTAGCCGA GGCGATTCAG ACAATCCATC AGCTTGCGTT CGGATAGATT GGTGAAGTCG CCGCGCATCA 2800
TGCCCGACAC CTTCGGTTGC GGGATGCCCA TGCGTTTGGC CGCCGCTTGT TGAGTCAGCC CAAGGGCGCG CATGGCCCTC CTGATCTCGA CCACCAGGCC 2900
GGTCTTGATC TTGAGCTTTT CAGCGTCAGG CAGTCCAAGG TCGGCAAAGA CGTTGCCCGA GCTGCGCTGA ACCTCGACGC CTTCAATGAT TCGTTTTTGC 3000
ATTTCGTAGC TCCTGTGCCA ATACCTCGGC CACCTTCAGC CGAGCGCGGA TGATGTCCAT GTCGGCCTTT GGCGTGGCGA TTCCGCTCTT GCTCTTCTTC 3100
TGGAAGCAGT GCAGGACGAA CACCGCTTCC GCAAACTTGA CCGTGTATAC CGCTCGATAG GTGCCGCCGG CATCGTCTTC GACGACCTCC AGCACGCCGG 3200
CACCACCGAA CCCCTTGAGC ACCTTTGCTG CGTCATCCTG ATCGCCTATC TGCGCCAACG AGAGCGCGTA ACCGAAACGG CGACGCACGT CGGACGGCAA 3300
CGCCATCAAA TCCTTGTGGC TGCTCGCGAT CCATTCGAGC GGTTTTTCTT TGTTTGTCAT GACGGAATTT TATACCTGTT CAGGTAATGA TGTAAACGCG 3400
GCAACCTCAA GGAGGTGTCG TAAAACATTT GTTTTGCGAC AGGCTGTCAG CCGCCGCTGT GCTACCTGTG CAACCACCCC CTCAAAAATG TACGGAAAAC 3500
TCTATCGCTA TTCACTATTA TGCGGAAACC TGTTTTTGAT GGTTATCCGC CTATGTTGGT TGGCTACATG CGCGTGTCGT CGGACTCCGA CCGCCAGAGC 3600
ACGGACTTGC AGCGCGACGC GCTGCTCGCC GCCGGCGTCG ATCCGCGTCA CCTGTTTGAG GATCGTGCCT CTGGCGCGAA GGATGACCGT GCCGGCTTGG 3700
CGCGGGCGCT TGAGTTCGTT CGAGCCGGCG ATGTGCTGGT GGTGTGGAAA CTCGACCGGC TCGGTCGCTC GCTGTCGCAC CTGCTCGCCA TTGTGACTTC 3800
GCTCAAGGAC AAGCGGGTGG CGTTCCGCTC GCTGACAGAG AACCTGGACA CTACGACGCC CTCGGGCGAA TTCCTGTTCC AGGTGTTCGG TGCGCTCGCG 3900
CAGTACGAGC GCGCCTTGAT TCAGGAGCGC GTCGTCGCGG GCTTGGCCGC CGCACGCAAA CGCGGCCGGA TCGGCGGCCG GCCGCAGGCG ATCACTGGTG 4000
AGAAGCTGGA CGCCATCGTC GCCGCGCTCG ATGGCGGCAT GTCTAAGGCG GCGGTGTGCC GCAACTTCAA TGTCAAGCGC ACTACGTTGA TCGAAACATT 4100
GACGCGAGCA GGTTGGCGTG GTGCGGGAAG GACGGTCGAT GAGCAACAAG AATAAGCTAC TCACCGTCTT TTCTGACGCA GAGCAGGAAG CCTTGTACCG 4200
CCTACCGGAC TTCGACGATG CTCAGCGGCT GGAATACCTG GCGTTGGCCG AATCTGAACT GGCGTTCGCC AGCAGCCGGC CTAGCCTGCA GGCCCAAGTC 4300
TATTGCGTCT TGCAGATCGG CTACTTCAAG GCCAAGCATG CTTTCTTCCG CTTCGATTGG CATGAGGTCG AGGACGATTG CGCCTTCGTG CTGAGTCGCT 4400
ATTTCCACGG CGAAGCGTTC GAACGCAAGG CGATCACCAA GCATGAGCAC TACAGCCAGA GGGGTCAGAT CGCCGAACTG TTCGGCTACC GGTCGTGGGC 4500
GGCTAGCTTC CTGCCGCAAC TGGCACAGCA GGCTGAACAG ATCGTGCGGC GCGACGTAAT GCCAGGATTC GTGGCCGCCG AACTGATCGT TTGGCTCAGC 4600
GAGCACAAAA TCATCCGGCC CGGCCACACC ACCTTACAAG AGCTGGTCAG TGAAGCCCTG TCCACCGAAC GCAGGCGCTT GGGCGGCTTG CTGGCAGAAG 4700
TGTTGGACGA ATCGGCCAAA GCTGCGCTGG GCCAGCTCCT GGTGCGTGAC GACACCCTGT CTCAACTGGC AGCGCTCAAG CAGGACGCTA AAGATTTCGG 4800
CTGGCGTCAG ATGGCAGGGG AGCGCGAGAA GCGCGCCACG CTGAAGTCCT TGCACGGGAT CGCCAAGGCG CTGCTGCCCA AGCTCGGCAT CTCGCAGCAG 4900
AACCTGCTGT ACTACGCGAG CCTGGCGAAC TTCTATACCG TCCATGACCT GCGCCACCTG AAGGCGGAGC AGACCCGGCT CTACCTGCTG TGCTATGCCT 5000
GGGTACGTTA CCGGCAGCTC ACCGACAACC TGGTCGACGC GATGGCCTTC CACATGAAAA AACTTGAGGA CGAGAGCCGC ACGGGTGCGA AACAGTCCTT 5100
TGTCGCCGAA CAGCTGCGAC GCCATCAGGA AACGCCGCAG GTTGGCCGCC TGCTGTCGCT GTACGTGGAC GACAGCGTGG CCGATCCGAC GCCGTTCGGC 5200
GAGGTGCGCC AACGCGCCTA CAAAATCATG TCCAGGGAAT TGCTGCAAAA CACGGCGCAG CGCATGAGCG TCAAGCCACT GAACAAACTG GCGCTGCACT 5300
GGCAGGCGGT GGACGGCCTG GCCGAACGCA TTCGACGCCA TCTACGGCCG CTGTACGTCG CGCTCGACTT CGCCGGCACG GCCCCCGATA ACCCATGGCT 5400
CGCGGCGCTG ACTTGGGCCA AGAGCGTGTT CGCCAAGCAG CAGCGCCTAT CACAACGGCC ACTCGACGAA TGTCCGGCGG CAACGCTGCC GAAACGCTTG 5500
CGTCCGTACC TGCTGATGTT CGATGCCGAA GGCACGCCGA CAGGCCTGCA TGCCGATCGT TACGAATTCT GGCTTTACCG TCAGGTCAGG AAACGCTTCC 5600
AGGCGGGCGA GCTCTACATT GACGATAGCT TGCAGCACCG GCATTTGTCC GACGAGTTGG TTTCGATGGA CGAGAAAGCC GCCGTGCTCG CGCAGATGGA 5700
CATCCCCTTC CTGCGGCAGC CGGTCAGTGC CCAGCTCGAT GCACTGGCGG CCGAGTTGCG TGCGCAATGG GTGGCGTTCA ATCGCGAGCT GAAACAGGGC 5800
AAGCTGACGC ACCTGGAATA CGACAAGGAC ACGCAGAGAC TGACCTGGCG CAAGCCCAAG GGGGAGAACC AGAAGGCGCG CGAGCAAGCT CTCTACGAGC 5900
AACTGCCATA CTGCGATGTC GCCGACGTGT TTCGCTTCGT CAACGGCCAG TGCCAGTTCC TGTCGGCGCT GACACCATTG CAGCCACGCT ATGCGAAGAA 6000
GGTAGCCGAC GCCGACAGTC TGATGGCGGT GATCATTGCC CAAGCCATGA ACCACGGCAA CCAGGTTATG GCACGTACCA GCGACATCCC GTACCACGTC 6100
CTGGAGAGTA CCTACCAGCA GTACCTGCGC CAGGCGACGC TACATGTGGC CAACGATTGC ATCAGCAACG CCATCGCCGC ACTGCCGATC TTCCCGCATT 6200
ACTCGTTCGA CCTCGATTCG TTGTACGGTG CCGTTGATGG GCAGAAATTC GGCGTCGAGC GACCAACTGT GAAGGCGCGC TACTCGCGCA AATATTTCGG 6300
CCGCGGCAAG GGCGTCGTCG CCTACACGCT GCTGTGCAAT CACGTGCCGT TGAACGGCTA CCTGATAGGC GCACACGAGT ACGAGGCTCA CCACGTGTTC 6400
GACATCTGGT ACCGCAACAC GTCGGACATC GTGCCGAGCG CGATCACCGG CGACATGCAC AGCATCAACA AGGCCAACTT CGCCATCCTG CACTGGTTCG 6500
GACTTCGTTT CGAGCCGCGC TTCACCGACC TCGACGACCA GTTGCAGGAG CTGTATTGCG CCGATGATCT GGCATTGTAC GAGAAATGCC TGATCCGGCC 6600
GGCTGGCCAG ATCGACCGGC AACTCATCGT CGGTGAGAAG GCGAACATCG ACCGAATCGT CGCCACACTG GGCCTGAAGG AAATGACGCA GGGCACGCTG 6700
ATCCGCAAGC TGTGCACCTA TACGGCGCCG AACCCGACGC GGCGCGCAAT CTTCGAGTTC GACAAGCTCA TCCGCAGTAT CTACACACTG CGCTACCTGC 6800
GCGACCCGCA ACTGGAGCGT AATGTTCACC GCTCGCAGAA CCGCATTGAG TCCTATCACC AGCTACGCTC GACCATCGCC CAAGTCGGTG GGAAGAAGGA 6900
ATTGACCGGC CGCACCGACA TCGAAATCGA GATCAGCAAC CAGTGCGCCA GGCTGATCGG CAACGCGATC ATCTTCTACA ACTCGGCGAT CCTGTCCCTG 7000
CTGCTGACGA AGTACGAGGC AGCTGGCAAT GCCAAGGCGC TGGCGTTGAT CACGCAGATG TCGCCAGCGG CCTGGCGGCA CATCCTGCTG AACGGGCATT 7100
ACACCTTCCA GACTGACGGC AAGTTCATCG ACCTGGATGC GCTCGTGGCG GGACTGGAGC TGGGCTGACG GAAATTTCTG GGATTCCGGC GTACAACCCC 7200
|
|
|
|
| Recombination Sites |
|
|
| Name |
Coordinates |
Gene |
Sequence |
| res |
3376-3506 |
131 |
CTGTTCAGGT AATGATGTAA ACGCGGCAAC CTCAAGGAGG TGTCGTAAAA CATTTGTTTT
GCGACAGGCT GTCAGCCGCC GCTGTGCTAC CTGTGCAACC ACCCCCTCAA AAATGTACGG
AAAACTCTAT C |
| res_site_I |
3376-3405 |
30 |
CTGTTCAGGT AATGATGTAA ACGCGGCAAC |
| res_site_II |
3413-3443 |
31 |
AGGTGTCGTA AAACATTTGT TTTGCGACAG G |
| res_site_III |
3482-3506 |
25 |
TCAAAAATGT ACGGAAAACT CTATC |
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| rpfG |
Tn4662a |
168-1472 |
Passenger Gene |
Other |
- |
| pDK1_p018 |
Tn4662a |
1590-1982 |
Passenger Gene |
Hypothetical |
- |
| pDK1_p017 |
Tn4662a |
1967-2293 |
Passenger Gene |
Hypothetical |
- |
| WP_000741275.1 |
Tn4662a |
2350-2652 |
Passenger Gene |
Hypothetical |
- |
| HTH_37 |
Tn4662a |
2667-3002 |
Passenger Gene |
Antitoxin |
- |
| Gp49 |
Tn4662a |
2983-3360 |
Passenger Gene |
Toxin |
- |
| tnpR |
Tn4662a |
3520-4155 |
Accessory Gene |
Resolvase |
+ |
| tnpA |
Tn4662a |
4139-7168 |
Transposase |
|
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| rpfG |
RpfG |
Tn4662a |
1305 |
168-1472 |
- |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Comment: | metal dependent phosphohydrolase with conserved HD motif |
Protein Sequence:
|
MVKRIPVSEL RLGMYIHKLA GSWVRHPFWR GSFLLTEPQD LSAIRECGVG EVWVDLAKSQ VDPESPESPE SPESPESPES PESPESPEPR AQSPEPRAQS
PEPRELSEEQ SLPSSPLSKK SDGATSMESE MCYARKLCLA AKSQVMDMFQ EARLGKAVDP STTLPLVGEI AASVLRQPHA LISVARIKTH DDYTYLHSVA
VCALMLSLAR HLDLDEEQTR LAGIGGLMHD LGKAAMPLEV LNKPGKLTDA EFAIMKRHPV EGAKMLRAGG AEPGVVDIAL HHHEKIDGTG YPDRLAGDAI
SLLARMGAIC DVYDAVTSER AYKKPWDPSA AMRQMAKWEG HFDKRIFHAF VKAVGIYPVG SLVRLSSQRL AVVVEPGMES LLTPKVRVFF SLRSREPIPM
QTIDLAATSC KDSITGPEDP TLWNFKNLDD LWME
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| pDK1_p018 |
PDK1_p018 |
Tn4662a |
393 |
1590-1982 |
- |
| Class: | Passenger Gene |
| Sub Class: | Hypothetical |
Protein Sequence:
|
MDEQMNLSTI EALAIAWARI AEEAELPAGY EGTATPEAHR ACEVIQERIR EHVVATNDMR LFGLLHLLGQ ASLRMEQALW PEEYARMTRE VEEALREADD
PNAKSYTHEE VMQAMQERID RARDKAMLIG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| pDK1_p017 |
PDK1_p017 |
Tn4662a |
327 |
1967-2293 |
- |
| Class: | Passenger Gene |
| Sub Class: | Hypothetical |
Protein Sequence:
|
MSRSRRKTPI VGHTTCRSER EDKKLWHQRW RTHERTALAS ASPEALCAHL PLLENQVSNV WSMGKDGRSY WPIKRQAATA DRIANHKGRN PQERASLKKR
LLRKWMSK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| WP_000741275.1 |
WP_000741275.1 |
Tn4662a |
303 |
2350-2652 |
- |
| Class: | Passenger Gene |
| Sub Class: | Hypothetical |
Protein Sequence:
|
MAARITDDEW DELTPENFDT TALLRAVDAV DVLRGDLNDS ADGAPPQLRT DLLKLHQLAM AAFNERSRSR VAELFDLAVD LQDQVDHLMT SLEQVQETLS
R
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| HTH_37 |
HTH_37 |
Tn4662a |
336 |
2667-3002 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antitoxin |
| Sequence Family: | HTH_37 (Pfam:PF13744) |
Protein Sequence:
|
MQKRIIEGVE VQRSSGNVFA DLGLPDAEKL KIKTGLVVEI RRAMRALGLT QQAAAKRMGI PQPKVSGMMR GDFTNLSERK LMDCLNRLGY DIEIKVRPAA
EPIGHLTLAT A
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| Gp49 |
Gp49 |
Tn4662a |
378 |
2983-3360 |
- |
| Class: | Passenger Gene |
| Sub Class: | Toxin |
| Target: | ribosome associated mRNA |
| Sequence Family: | Gp49 (Pfam:PF05973) |
Protein Sequence:
|
MTNKEKPLEW IASSHKDLMA LPSDVRRRFG YALSLAQIGD QDDAAKVLKG FGGAGVLEVV EDDAGGTYRA VYTVKFAEAV FVLHCFQKKS KSGIATPKAD
MDIIRARLKV AEVLAQELRN AKTNH
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
Tn4662a |
636 |
3520-4155 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MRKPVFDGYP PMLVGYMRVS SDSDRQSTDL QRDALLAAGV DPRHLFEDRA SGAKDDRAGL ARALEFVRAG DVLVVWKLDR LGRSLSHLLA IVTSLKDKRV
AFRSLTENLD TTTPSGEFLF QVFGALAQYE RALIQERVVA GLAAARKRGR IGGRPQAITG EKLDAIVAAL DGGMSKAAVC RNFNVKRTTL IETLTRAGWR
GAGRTVDEQQ E
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn4662a |
3030 |
4139-7168 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MSNKNKLLTV FSDAEQEALY RLPDFDDAQR LEYLALAESE LAFASSRPSL QAQVYCVLQI GYFKAKHAFF RFDWHEVEDD CAFVLSRYFH GEAFERKAIT
KHEHYSQRGQ IAELFGYRSW AASFLPQLAQ QAEQIVRRDV MPGFVAAELI VWLSEHKIIR PGHTTLQELV SEALSTERRR LGGLLAEVLD ESAKAALGQL
LVRDDTLSQL AALKQDAKDF GWRQMAGERE KRATLKSLHG IAKALLPKLG ISQQNLLYYA SLANFYTVHD LRHLKAEQTR LYLLCYAWVR YRQLTDNLVD
AMAFHMKKLE DESRTGAKQS FVAEQLRRHQ ETPQVGRLLS LYVDDSVADP TPFGEVRQRA YKIMSRELLQ NTAQRMSVKP LNKLALHWQA VDGLAERIRR
HLRPLYVALD FAGTAPDNPW LAALTWAKSV FAKQQRLSQR PLDECPAATL PKRLRPYLLM FDAEGTPTGL HADRYEFWLY RQVRKRFQAG ELYIDDSLQH
RHLSDELVSM DEKAAVLAQM DIPFLRQPVS AQLDALAAEL RAQWVAFNRE LKQGKLTHLE YDKDTQRLTW RKPKGENQKA REQALYEQLP YCDVADVFRF
VNGQCQFLSA LTPLQPRYAK KVADADSLMA VIIAQAMNHG NQVMARTSDI PYHVLESTYQ QYLRQATLHV ANDCISNAIA ALPIFPHYSF DLDSLYGAVD
GQKFGVERPT VKARYSRKYF GRGKGVVAYT LLCNHVPLNG YLIGAHEYEA HHVFDIWYRN TSDIVPSAIT GDMHSINKAN FAILHWFGLR FEPRFTDLDD
QLQELYCADD LALYEKCLIR PAGQIDRQLI VGEKANIDRI VATLGLKEMT QGTLIRKLCT YTAPNPTRRA IFEFDKLIRS IYTLRYLRDP QLERNVHRSQ
NRIESYHQLR STIAQVGGKK ELTGRTDIEI EISNQCARLI GNAIIFYNSA ILSLLLTKYE AAGNAKALAL ITQMSPAAWR HILLNGHYTF QTDGKFIDLD
ALVAGLELG
|
|
| References |
|
|
| 1. | Assinder SJ, De Marco P, Osborne DJ, Poh CL, Shaw LE, Winson MK, Williams PA. A comparison of the multiple alleles of xylS carried by TOL plasmids pWW53 and pDK1 and its implications for their evolutionary relationship. J Gen Microbiol. 1993 Mar;139(3):557-68. doi: 10.1099/00221287-139-3-557. PubMed ID: 8473862
| | | 2. | Assinder SJ, de Marco P, Sayers JR, Shaw LE, Winson MK, Williams PA. Identical resolvases are encoded by Pseudomonas TOL plasmids pWW53 and pDK1. Nucleic Acids Res. 1992 Oct 25;20(20):5476. doi: 10.1093/nar/20.20.5476. PubMed ID: 1331988
| | | 3. | Benjamin RC, Voss JA, Kunz DA. Nucleotide sequence of xylE from the TOL pDK1 plasmid and structural comparison with isofunctional catechol-2,3-dioxygenase genes from TOL, pWW0 and NAH7. J Bacteriol. 1991 Apr;173(8):2724-8. doi: 10.1128/jb.173.8.2724-2728.1991. PubMed ID: 1672868
| | | 4. | Voss JA, Khedairy H, Baker RF, Benjamin RC. Molecular cloning of the xylL-xylE region from the P. putida TOL plasmid, pDK1. SAAS Bull Biochem Biotechnol. 1990 Jan;3:54-7. PubMed ID: 1366507
| | | 5. | Shaw LE, Williams PA. Physical and functional mapping of two cointegrate plasmids derived from RP4 and TOL plasmid pDK1. J Gen Microbiol. 1988 Sep;134(9):2463-74. doi: 10.1099/00221287-134-9-2463. PubMed ID: 3076182
| | | 6. | Kunz DA, Ribbons DW, Chapman PJ. Metabolism of allylglycine and cis-crotylglycine by Pseudomonas putida (arvilla) mt-2 harboring a TOL plasmid. J Bacteriol. 1981 Oct;148(1):72-82. doi: 10.1128/jb.148.1.72-82.1981. PubMed ID: 7287632
| | | 7. | Kunz DA, Chapman PJ. Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1. J Bacteriol. 1981 Jun;146(3):952-64. doi: 10.1128/jb.146.3.952-964.1981. PubMed ID: 7240090
| |
| | |
|
|
