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| Name: Tn4652 |
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| Family: Tn3 Group: Tn4651 |
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| Evidence of Transposition: yes |
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| Host |
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| Host Organism: | Pseudomonas putida Strain KT2440 | Molecular Source: | genomic DNA |
| Place of Origin: | Singapore | Date of Isolation: | 1999 |
| | Other Geographic Information: | National University of Singapore |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 46 bp) |  | GGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAA |
| IRR (Length: 46 bp) | | GGGGTCATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTCTAA |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTTATGC CGAGATAAGG CAAAAATTAG GACATTCGTT CTGTAAATAT ATGATTTAAA AGGTTATTCG AGAGGCCGTG GCTTGCTGGT CATCCACCGT 100
CTGGCTAGCC GTCTATGCTG ATGCTTTTGC CTCGCTTGGG GGATGTGTTC AATGGCATCG GTGGAAAGAA CAGCCTACCC TATCTTGCCC AGTCAGCTAC 200
CGGCCAAGGA GCTTCATCGA AGCTATTCCC TGTCTGATTC AGAGATCGAA TGGGTCAACA ACACCGCTAA GAGTCCAGCG CTCTCGATTG GGCTGGCAAT 300
CCAGTTAAAG GTGTTTCAGC AGCTGCACTA TTTCGTTCCG TTCGAGGAGC TTCCTCAGGA ACTCATCAGT CATGTCCGGC AATGCCTCCG CTACGGCGCA 400
CGAATAGCTC CACGCTATAG CAATCCCCGC ACCCTTTACC GGCACCAAGC AGCGGTACGG CAGTACCTGC AGGTTACCCC CTTCTACAGC AGCGACGGGC 500
TAGCGGTCAC TGAGCAGATC GCACGTGACT GCGCTGTAGT TCTTGAGCAG CGAGTCGATC TCATCAATGC CATGCTTGAT GAGCTGATTC AGCGTGGCTA 600
TGAGCTTCCG GCTTATTCGA CGCTCAACAA CCTCGCAGAA ACCGCCTTGG CGAGTGCCCA GGAAGTTACC TTCAACCTAG TCGTGACTCG AGCGCCAATC 700
GAGGTGATCT ACAAGCTGAA GGAGCTGCTC GACACCGACT TCGGCCGGCG CCAGAGCGAT TTCAATGCGC TGAAACAGGC ACCCAAGAAG CCATCTCGCA 800
AGCACCTGGA GGTGCTGATC GACCACTTGG CCTGGCTAGA GAGCTTCGGG GACCTGGAGG CCATCTTTGA GGGGATCGTC GATGCCAAGA TTCGCCACTT 900
TGCTGCCCAA GCCGCGGCGG CGGACGTCTC CGAGCTGAAG GACTGCTCGC TGCCGAAGCG CCACACGCTG ATGCTGGCCT TGATATATCG AATGCGTGTG 1000
CGAACTCGGG ACCACCTGGC CGAGATGTTC ATCCGGCGGA TTTCGACGAT CCATAAACGC GCCAAGGAGG AGCTGGAACA AATCCAGGCG CGACAACGCC 1100
AGAAGCTGGA GCAGTTGGCG GCGACCCTGG ACGGCGTGGT GCAGATTCTG GTTCAAGAAC CGGATGACCA GGAAGCTGGC AGCCTGATTC GGGAATACCT 1200
CTCCCCTGAT GGCAATCTGG ATCGGTTGCG TGAGACTTGC GCCGAAGTCC AAGCTACCGG CGGTAATAAC TACCTGCCGT TGATCTGGAA GCACTTCAGG 1300
TCCCATCGCT CGCTGTTGTT CCGTCTCAGT CACCTTCTCC AACTGGAGCC CACGACTCAG GATCGGTCGC TGACTCAGGC ACTTCAACTG ATCCAGGACA 1400
GCGAGAATCT ACACCGCGAA TGGATCGACG AGCACGTCGA TTTGTCGTTT GCGTCGGAGC GCTGGGTCAA GGTCGTTCGT CGCCCTTCGA GTGAGGGGCC 1500
ACCGACCAAC CGGCGCTATC TGGAAGTTTG CGTTTTCTCC TACCTGGCCA GCGAGCTGCG ATCCGGCGAC ATGTGCGTAC AAGGGTCGGT ATCCTTCGCC 1600
GACTATCGCA AGCAGTTGCT ACCCTGGGAG GAATGTCTCC AGCGACTACC GGCCTACTGC GAAAAGATGG GGCTGCCTGG CACAGCGAAG GAGTTTGTTG 1700
CCTCTCTCAA GACCCAGTTG GAGGAAACCG CGCAACAACT GGACGAGAAA TTCCCATCAT GCCGAGGGGA CGTATCGATT AACGAAGCTG GAGAACCGGT 1800
GTTGCGCCGA GTAGCGGCGC GGGACATCCC CCCTTCGGCC ATCTCGCTGC AGACGGCGCT TATGCAGCGC ATGCCGGCCA GGCATGTGCT CGATATCATG 1900
GCTAACATCG AGCATTGGAT TCAGTTCACG CGGCATTTCG GGCCCATGTC CGGTAACGAG CCGAAGCTCA AAGAGCCTGC CGAGCGCTAC CTGATGACGA 2000
TCTTCGCCAT GGGCTGCAAC CTAGGCCCTA GCCAGGCTGC ACGGCATCTG ACCGGTAATG TCACGCCACA CATGCTGTCC TATACGAATC GCCGTCACCT 2100
CTCGCTGGAA AAACTGGACA AGGCTAACCG CGAGTTGGTG GAACTCTACC TTCAACTTGA TCTGCCCAAG CTCTGGGGCG ATGGCAAGGC GGTGGCTGCG 2200
GACGGCACGC AGTTCGACTT CTATGATGAC AACCTGCTGG CCGGCTACCA CTTTCGCTAC CGCAAAATGG GAGCCGTGGC CTATCGGCAC GTGGCCAACA 2300
ACTACATCGC CGTGTTCCAG CACTTCATCC CGCCGGGCAT CTGGGAGGCG ATCTACGTGA TCGAGGGGCT GCTCAAGGCT GATCTCAGCG TCGAGGCTGA 2400
CACGGTGTAC TCCGATACCC AAGGGCAGTC GGCCACGGTG TTTGCCTTCA CCCATCTGTT GGGCATCAAT CTGATGCCAC GTATTCGCAA CTGGCGCGAC 2500
CTGGTGATGT GCCGGCCGGA TCGCGGTGCT TCGTACAAGC ATATCAACCG CCTGTTCACC GACACTGCCG ACTGGAACTT GATCGAAACC CACTGGCAGG 2600
ATCTGATGCA GGTCGCATTG TCGATCCAGG CCGGCAAGAT TTCCTCGCCC ATGCTCGTGC GCAAACTCGG CTCCTACAGC CGGCGCAACA AGCTCTACCA 2700
TGCGGCTCAG GCACTGGGCA GCGTGATCCG TACGATCTTC TTGCTCAACT GGATCGGCAG TCGCGAGTTG CGCCAGGAGG TCACCGCGAA CACCAACAAG 2800
ATCGAGTCCT ACAACGGTTT CTCCAAGTGG TTATCTTTCG GCGGCGATGT GATTGCTGAA AACGATCCGG ACGAGCAGCA GAAACGGCTG CGCTACAACG 2900
ACATGGTGGC CTCGTCGGTG ATCCTGCAGA ACACTGTGGA CATGATGCGC ATCCTGCATA AACTGGCCCG CGAGGGCTGG CAGTTCACCG ATGAGGACGT 3000
GTCGTTCCTC AGCCCCTACC TGACCAGCAA CGTCAAGCGC TTCGGTGAGT TCAACCTCAA GCTCAATAGG CCACCGGAGC CCTGGATCAA GGACTCGGTA 3100
TTCCAACAGG CCGCCGGCTC GCTTCGAGCC AACACGGCCA GCAAGACCGG TGCCTAGGAG GCAACATGAT CGAGATCCCT CCCGCGACTT TTCGAGTCAC 3200
ACCCTACGGA GAAGTGGATG GTGTAGCACT GGACAAGCTG CGAGCCAGCT TCGACACCTC CCAGCTTCTG CGACTGGTTG ACCAATTCGA TGCCTGTCTG 3300
GCTGAGTTAG GTGGAGTTGT GGCTGTCCGA GATGAGCTGC TGAAGCTTCA TGCGATGGCC CTAACCCTTG TAGAGGGTGT GCCACTGACA GTACCTACTG 3400
AGAATGCCTG CATCTGGACG GAGGCTGAGT CGCTGCAACA GAATCTCGAG ACCCTAGCTG GGTGGGTGCG CTCTGCTCAA GCTGGAATAA TCCCCTTGGT 3500
CAATCTAGCG CCCGACCACG AACAGTAAGC ACTTGGGAGA GTGCCTATAT TGTAAATGCG CAGGCTTGAG GAAAGACCAT CTCTTGCCGG ATTAAATCTT 3600
CGACAGCGGC AATCCAATAC TTATCGAGCG ACCAGCCGAA GAACTTGACC TGTCTCACCC GAGCGTCAGG GGCCAGCACC AGATGGCGAG TGGCCTTGGC 3700
CAGCGTTACG ATCAACAGTA AGCTCCAAAA GGGTTCCCGC AGGACGCCAG CCACTACTGT GAGTGGATCA CCAATAATAT GTACCCAGCT GATCAGCAGC 3800
GACCAGCGCC CGAAGCGGTG ATAAGCCTGC TGGGTCTTTT CCAGTTTTTC TTCGCTGACG GGAAACCAGC GTTTGTGTCG GTAGTGTTCG ATAAAACGGC 3900
CCAACAGCCA GTTCAGTGCT TAGCCCAGTA CATTGCCCGT GGTCGCCACG GCCAGCCGTG TCCAGGCGGC ATAGGGGTCG GTCAGCAGCA AGCCGACCAG 4000
CACCGCTTCC GGCTGCATGG GCAGCAGCGT GGCGGCACCG AAGGCGGCGA GGAACAGGCC GAAATAGCCG GATAACTCGC ACATCAGGCT AGGCGTTCAG 4100
GCCCGATCCA GCCATGGACA CCCACGTAAA TCCCCACACC GATGATCAAT AGGCTGGACA GGTACGGAGC GCGACGCGCC ACAGCACCAA GCCAGGGCCA 4200
GCGATTGGAC GCCTGGCGTG CTCCGATAGC GGCGGCAGCA CCAACGGTAA CCAGGGTGAT GGCCAGGCCA ATGCTGAAGC ACAACACCAG CACGGCTCCC 4300
AGCGCGACTT CCTTCACTTG TAGGCAGAGC AGCAGCACGG TGATCGCTGC CGGGCAAGGA ATCAGCCCGC CCGTCAAACC GAACAGGATG ATCTGGCCCG 4400
TGGTGACGTT GCGATTGCTA AAGCGCTTGC GGATATCGTT GGCATGCGCC CGCTCATGGG CATCCTGGTA GCCCTCCAAC GACAGCTCCA GGCCCTCCAG 4500
TTCTGCATGA TCATGGCCAT GACCGTGGCC GTGCTCGTGG AACTCCAGAT CATAGTCGTG AGAATGACCG GCATGGCCGA GGCTCAGGCG CGCTGTGAAT 4600
TCGTGGGGTT CGGGAATCTC GTCCACTGAC TCCAGGTAGT CACCTCGGTC GACGAAGCGA AACTGCTGGG CCAGGCCATC GGGGCGGGTC GTCAGCAGGC 4700
TCATTTCAGC TGCCGACCAG GCATGGCCAG TCAAGATATT CAGTCGCCAG CGCGGAGGGA CGCCCTCTTC GAAGATCGAC AGTTCGATGC GCCCATGCCC 4800
GGTGTCGATG CGCTGCATTT CATCGTGGTG GTGATAGTCA TGCTGAAGAT CATCGCCTTC CTCGAAGCGC CACATCTGCT CGCCACGCCA GGTGCGCCAA 4900
AGCATCCACA GGGCGATGGT GATAATTATG GCGGCGGACG CAAGCTGGAA ATACGGCTCG GTGGTTTCGG CATTCAGGTT CTGCCCCAGG TACATGCCGG 5000
CCATGGCCAC CAGCCAAACC ACTGCGGTGT GGGAAAGCGT TGAGGCCAGT CCCAGCAGAA CAGCCTGCTT CACCGTGCCG CGAATGGCCA CGATAAACGC 5100
CGCCATCATG GTTTTCGAAT GCCCTGGCTC TAGGCCATGC AAGGCTCCCA GCAGGATGGC ACTGGGGAAG TACAACCAGG CCTGCGAGGC TCCCTGTTGC 5200
AGCAGTTCAG CGAAGCTCGA CATGGGAAAA GGCCTAGAGG TACTTAGTGA TTTGCTTGAA GTCTTCGAGC GATGCGCGTT CACCTGTCGC GAGTGCTTCG 5300
ACGGTGTGTT CCAGGCAGTG ATCGATATGG TCTTGGATAA GCACACGCTT CCTGGCAGAC GGCTTTTTCC ACGGCATGCA GTTGCTGAGC GATGTCGACG 5400
CAGGCCCGGC TGTCTTCGAT CATGCTGACG ATGCTGCGCA GGTGGCCCTC CGCACGCTTC AACCTTTTGA TGATATCGCT ATGACTTTGG TGCTGATGGC 5500
CGTGTTCGTG ATCGCTCATG CCTTGAGTCT CATGCATCGA TGAATTACGC TCGCATCCTA TCCCCCTGGG GGGGATATGG TCAAACCAAC TACCCCTTCA 5600
GAACAACCAT CCGCTTAGGC ATCAAAAGAA ACACGACATG CTCAGCAACC CCATCAGCAC TAAGGTGATT TTTGCCCTTG CTCTGGCCAT CTTGATAGCC 5700
TGGGCCGGGC ACACCTCTGC GCTCTTTATG GGTTCGAGTC AGCCAGTCGG GAGTGGCAAC AATGGCGCAC ATTCGCATAC CCATGGTGAC GAGGCGCTCG 5800
CCTGTGCTGC ATACGGGGAT CACTGCCACT CACCGCTGAC CGCCGACCAT GTGCATGAAA CACCGCACCT GACCACGCTG CTCAGCATCA GCACGCTGCC 5900
TGAACGTACG CAGCCGATAC CCGCCCCTCG TTACTCCATT CCTCCAAGCC CGATCTTCCT GATTGAACGG CCACCGCGCG CCACATTCGT GCTCTGACAT 6000
AGGCTGCTGT GCGGCCCAAG ACCCCTTTAA CTCAGGACTC AACCATGGAT TCGTTATCCA TGAGCGCAAT GGGCGCATTT GTCGTGCGTC CGAATCGCTC 6100
GTTATTACTG CTGCTGTTGT TTATGGGCAC CTCGAATAAC GCGAGGTTTT CAGTGAATCC GACCGCCAAA TGATGGCCAT GATCGAATTC GGTTCGATTT 6200
CTGCGGCGAA TCACCGCTTT CTGGGCGGTG TCGCCCGTTT TTCTTCCGAA TCGCCCTCTG CAGCGGCGAT TCGGCCCACT CCGGGCGTCA GAAGGCCTTG 6300
ATTCCCGCCT TCTGGAAGTA CACCAGCCGC TTCAAGTTGT AGCAGGCCGC CATCATCGTC ATCGCAAAGT TCGCGCGCCC CTGTCCGATG GTACGGATCA 6400
ACTTGCCGCC CATCTGCTCG ATGCTCGCGA ACACGTGCTC CACTCGGGCA CGCGTCTTGG CGATGCGGTG GTTGCGCCGT TGCTGACACT CGGAAAGGGG 6500
CTTGTTGCGG TACCCCTTCC TCTGGATCTG ATTACGATAG CCGTGATCCT TGAGCCAGCC CTCCCGGTCT GCGCTGGTGT GGCCTCGGTC CGCATAGACA 6600
TCGCGGCTCG TGTTGCTCCG GTCGATGAGC GCATCGAAGT GCTTGCTGTC ATGGACGCTG GCCGTATCAG TCTCGAATTT GCGGATGATC TTGTACTTCT 6700
TGTCCACGTT GACCGAGAGC TTGTAGCCGA AGTGGTTCTT GCCGTGCTTC TGCGTCCAGG TGGCATCCGT ATCCTTCTGG CGCCGTTTGG CTGGCTTCCA 6800
GTTAGCCGGC ATCGCGCCTT CCCTGACCAG CTTGTTCTCC TCACGGCTGT TACGTTGCTT GGGAGCAGGC ACCAGCGTGG CATCGACGAT TTGGCCGCCG 6900
CGGGCGATGA ATCCGTGCCG GAGCAGTTGG GCCGTGACAC CGTCGAACAG GACCTTCGCG CCGGCGTCGC CGATGCGGTT CTCGAACGTC CACACGGTCG 7000
TTCGATCCGG AATATTGACC GCGCTGGCCA ACCCGCAGAA TCGCTTGTAG CTCATCCGGT CAAGCAACTG GTACTCCATC TGTTCATCCG ACAGGTTGTA 7100
CAGCCGCTTG AGCACCAGAA TCCGCACCAT CGTCTCCGTC GGATACGGCG GGCGACCGCT TGAGGGCTGA CAGGGCGCGG CGCTACCCGA TCGACTTCCG 7200
CCGCAAGTGC CGCGAAATCG ATGTACGACT CGATCTGGGC CAGCGGATCT CCAAGCGTGT CGATCTTCTT CCGATGATGT TCGTCAGCGA ACAGGTCCGT 7300
CTTGATGGCA GTGCGCTTCT TCATGGCTGG TGTCAGAGAA CGAAATCAGG ACAACGCAAT TTTACCAATC GCAGGGGGCC GAGGTTTTTC GAGGTGCCCT 7400
GAAGGAAGTC TGCTACGCCC CGAGCGTATG GGAAGGCTGG CAACGCTGGC GGGCCTGGCT ACGGCATGCC CGTGACAGAG GCTTAGCGCT TCGCCAAAAA 7500
CCTCAGGCGC TATATCCGCG GCATCCTCGC CAGCGCCCGT TTTCCCATGC ATACCAGCCT GCTGGAGGGC GTGAACAACC GAATCAAGGT GATCAAGCGC 7600
ATGGCCTATG GTTTCCGGGG CTCGGACTAC TTCTTGCTGA AAGTCAAGGC TGTCTTCCCC GGGAAAGCGC GATGAACCTT TTTTCGTGCC GATGCTGGCG 7700
TTGATAGTGG AGCTACTCAA CTCAACCATA GAGAGCACTG TTGACCGTAT TTCCCTGAGC ATTCACCCAC TGTCTAAACA AGCCAAGGAT ATGGGAAGTG 7800
CGGCGCAACT CATTGCACTG ATACTGATTG GCCTTACTTG GGGGTTGAAT CCTGGTATAA GCTTCCCATT CTTAAATTAT AAAAGGCTAC CCATTATGCC 7900
TCCCCGCATA CCAGCGTCCG CTGATGCCTC CAATGCGAAA GAAAAACTTG GCCTTAGCGA ACACCTGGCC TCCCTTTTTG GCAGTGCAGC GCTGTTAGTA 8000
GCTTTGCTGA CCCTGTTACG CGTGGCCCTA TTACTTTTCA ACCGAGAGCT GATTGGAGCT ACCGCGTGGA CCAGCCTGGC AGAAGCGTTT TTTAATGGCC 8100
TGCGTTTCGA CTTGCGCTTA GTGGTCTATA TCTGCGCACC ACTGACCCTG GCATTGGCAT ATCGCCCGGC AATGGTCTGC CGGACATGGC AACGCATTTG 8200
GCTGGGGACT TGCGCAGCGG TAGCTATCCT GCTCGGCATG ATTGAACTTG AACTTCTATC GAGAGTTTCA TCAGCGTCTC AACGCATTGG TCTTTCAATA 8300
TTTGCAAGAA GACCCGGCAA CTTGTGCTGA GCATGCTCTG GTATGGCTTT CCAGTGCTGC GCCTACTGGG TGCCTGGCTG GCGTTGAGCG CTCTCTTTTT 8400
CGTACTGCTG GGTTGGCTGG ATATACGCAC TCGTGGCAAG GGCCGCTCAA CCGTCGAGTC GCGCCGAACA ATGAATAAGC TCGGTCATGG TATGGCGCTG 8500
CTGCTTTGTC TGGCTATATC GGTCGTTGTG GCGCGAGGTA CTTTGCGGCA AGGGCCGCCA CTACGCTGGG GGGATGCATT TACCACAGAC TCAATGTTTG 8600
CCAACCACCT TAGGCCTCAA TGGCACCTTG AGCCTTTATG CCGCGGGCCA AGAACCACTA CTCAGGTGAT CGCGCCGACA AGGTTTGAAG AGCCGCATGC 8700
CCGCAGATCA AGCGACGACC CTGACACGCG ATCTCTTATT CACCGAACAC GACCGCCTAG CAGACCAGAA CACAGCAGCG ATCCGCCGCG ATTTCCAGCC 8800
CCCACAAGAC AGGCGCCTGC CGATCCGCAA TGTCGTAGTG ATTCTGATGG AGAGTTTTGC TGGGCACTTT GTTGGCGCGC TCGGCAGCGA AGCTGGCATC 8900
ACACCGAACT TCGACCGACT GGCTCAGGAG GGTGTGCTGT TTCGCCGCTT CTTCGCTAAT GGCACCCATA CCCATCAAGG CATGTTTGCC AGCATGGCCT 9000
GTTTCCCAAA TTTACCCGGT TTCGAGTACT TGATGCAGAC TCCGGAAGGA GGCCACCAAT TCTCCGGTCT GGCTCAGTTG CTTAGCACTC GCGACTTCGA 9100
CGATCTGTAT GTCTACAACG GCGATTTTGC CTGGGATAAC CAACGTGGCT TTTTCAGCAA CCAGGGCATG ACACGGTTTA TCGGTCGTAA TGACTTTGTT 9200
GACCCCGTGG TATCTGACCC GACATGGGGA GTGGCTGACC AGGATATGTT TGATCGCGCT GCAGAAGAAC TGTTCAAGCA AGACCCGAAG AAACCCTTCT 9300
ATGCACTCCT GCAAACGCTT TCAAACCATA CGCCTTACGC GCTGCCAGGT GTGTTGCCTG TTGAGCCCGT GACAGGGCAA GGTTCGCTTG ATCAGCACCT 9400
GACAGCTATG CGTTATTCTG ACTGGGCTCT GGGACGATTT TTTGAAAAGG CTCGTAAAGC GCCTTATTTC AAAGACACCC TATTCGTGGT CGTGGGTGAC 9500
CATGGCTTTG GTGCTCAAGA GCAGTTAACC GAGATGGATC TGTACCCGGT AATCCCCCCT GAAAATCAAG CCCTCGTCAG AAGTAGAATT TTCTCCTAAT 9600
CGGATCAAGG AAATTTTGCG TGAAGACATC GCGTTTTTCG GACAGCCAGA TCATCGCCAT CCTCAAGCAG GCTGAAGCCG GCAGCCCAGT TCCGGCGCTG 9700
TGCCGCGAGC ATGGCATCAG TTCGGCGACC TTCTACAAGT GGCGTGCCAA GTTCGGCGGC ATGGATGCAT CATTGATGAC CAGGCTGCGT GAACTGGAAG 9800
AGGAGAACCG TCGGCTCAAG AAGATGTACG CCGAGGAGCG CCTCAAGGCC GAGATCATCC AGGAGGCCAT GGCAAAAAAG TGGTAAAGCC ATCTCAGCGG 9900
CGCGAGATGG CGCAGCAGGC GGTTCGTTCA GGCAAAGCCA GTATCAAATT AGCGTGCCTG TCGTTTGGTA TCAGCACGAC TGAACCGCCC CGGGTTTCGC 10000
GGAGGCTCCA CCCTTTGAGA GAATGGAGCC CATATGAGCA AGCACACCAA ATTTTCCCCT GAAGTCCGTG ACCGGGCCAT CCGTATGGTT TATGAGGTCC 10100
GGGAGTCCCG CACATCGCAG TGGGCCGCCA TTGAGGCCGT GGCCAGCAAG ATCGGCTGCA CCGCCCAGAC GTTGAGCAGT TGGATTCGGA AGGCGGCTGC 10200
GCCTGCGGCC CCCTCCGCCT CGGGCACTGA TGCCCGCGTC AAGGAACTGG AGCGCGAGGT TCGTGAGCTC AAGCGAGCCA ACGAAATCCT CAAGGTCGCC 10300
AGCGCTTTTT CCGCCCAGGC GGAGCTCGAC CGCCGTTTGA AGTGATCTGG CAGCTGATCG ACAAGCACCG GCAAAGCTTT GGAGTCGAGC CACTGTGCCG 10400
CGTGTTGCAA GTGTCTCCAT CGGCTTACCG GCGCCATGCT GCACGGCTAC GTGACCGCTC ACGACGCTCC GCCCGAGCGA TCCGTGACGA GGAACTTGCT 10500
GTACAAATTC ACCGTGTCTG GCAGGAAAAC TACGAGGTCT ACGGGGCTAG GAAAGTCTGG CGGCAGATGC ATCGCGAACA CCAGGTGGTT GCGCGCTGCA 10600
CAGTGGAACG GTTGATGCGT GAAATGGGGC TCTGCGGCGT AACGCGGGGC AAAACGGTGA AAACCACACA ACCCGATCCT GACAATGCCA ATCCCAGGGA 10700
TCTGGTAAAG CGCCAGTTCA CGGCCGAACG TCCCAATCAG CTCTGGGTCG CCGATTTCAC ATTCGTTTCA ACCTGGCAGG GATTTGCTTA TGTGGCGTTC 10800
ATCGTCGATG TCTACTCACG GTTTATCGTA GGCTGGCGTG TCAGCCGACA CATGCGCACA GAGTTTGTTC TGGATGCTCT GGAACAGGCG CTTCACACTC 10900
GTCGGCCTGA GCCCCACCGG CTGGTTCATC ACAGCGATAG GGGCTCGCAA TATCTGTCGA TTCGCTACAG CGAGCGGCTG GGCGAAGCTG GCATCGAACC 11000
CTCGGTTGGC AATACCGGTG ACAGCTACGA CAACGCACTG GCAGAGACCA TCAACGGCCT CTACAAGACC GAACTGATCC ATAAGCGAGG GCCGTGGAAA 11100
AGCGTAGACA GTCTGGAGTG GGAAACGCTG AAGTGGGTGA CCTGGTTCAA CCATCAGCGC CTGCTGGAGC CAATTGGAAA TAGGCCACCG GCCGAGTTTG 11200
AGGCACTATA TGAACAGAGT CAGGCAACCA TATCGGTTGC TGCCTGACTC AAACAAAACA GCCTCCGCGA AACCCGGGGC GGTTCAATTA GACGGATAGC 11300
TGCTAGCGCA CTGGTCCTGA TAATTTTTGC ACTGTGTAAT ACCGCAGGTG CGAATCCATC CAGGGTATTT GGCTGGATTG AGGAGGGGCT GCTGCTTCCT 11400
GAAAAAGTCT CGGTGAAAAT CAAGCTGGAT ACCGGCGCAC TGACATCGTC TATGGATGCC AAAGATTTGG AGCGTTTCGA AAGGAATGGC GAGAAATGGG 11500
TGCGTTTCAA AGTTGAAGTG AAAGACAGTG ACACAGGCAG AGCAGCCAGC ATCCCTTTCG AGCGAAGGGT CGAGCGTAAC GTCAAAGTCC GTGGTGCTGG 11600
CGGCGCTGAG CACCGCCCCG TGGTAGTGAT GAAGATGTGC ATTGGCAACC AGCTTTTACA ACGAACAATT CTCCCTGAAG AACCGGGAAA AAATGCTCCA 11700
TCCGGTTTTG ATCGGCCGTC GAGCACTGGA GCACCTAGGA GCGGTGGATG TATCACGCAC CTTCACTCAG GAGCCCAAGT GCGAGAAAGC CGACCCGGCG 11800
CAGAGCGGGT ATAGAGTTTC CAGGCTCCGA TCAACAGAGC CAGCCAGAGC AAGATGACCA CCAGCGCAGC GCCCCGGCTC ACTGGGCGGT GTTGCTGTGT 11900
GCTTTCCCAT TCAAGGGCCT GCTGGCGGCA TTCGTCCAGT ACGTGATCGG GCATCAGCTT GATTACTAGC CAGATGGCCA AAGGTAGCAA GATCACATCG 12000
TCCAGGTAGC CAAGGACCGG AATGAAGTCT GGAATCAGAT CGATTGGGCT TAGGGCATAA GCGATTACGA TCATCGCTAT AACCTTCGGC AACCATGGCG 12100
TTTGCGGATG CCGGCAACTA AACCACAGCA TCATAACTTG CTGTTTCAGG GCCTTGGCCC AGCCGCGAAC TCGTTGCAAT ACGTTACTCA CTTTCTAGAA 12200
TCCGTAGCCA ACCAGCGCCA ATAGCTTGCG GTGGCCGAGT TTGTCGGCGA CGTAGCCGGA GGCCATCTTG GTGTAGCTGG CCAATGCATC AGCAATATCT 12300
TCGATGGTGC CAAGTGCCGC CGCCGGAATG CCCAGTACAG CGAGGAAGCT GGGCAAGATC ACTGTGGTAG TTTCATAGCA GAAATCACCA AGGGTGCTGG 12400
TTAGCCCCGC ACCAACGACC GTGCGGTTCA TCCAACCATT TGTCTGAGAT GGTTCTGCCT GGCCGACGCC CCTGTAGGCA GCGTGAATCG GGCGCTCAGC 12500
AAGGGATTTT ATAATCGCTC TATAATTAAA CTATAAAGAT CTATAAAGCT CATTCTAGAG CGGCTCAACT GCCTGTATGT GTTGAGAGAG CCCGATTACA 12600
CTTCATGTTG CGCCATCGTC CCTGGGGTGT GCCGATATTA ATGAGAAGCT GAAAGTTGAC CCAAAGGGCC AGCATGAAGC TCAAGGACAG GTTTAGCTGC 12700
AAGGCCGCCA AAGGATATGG CGGGGTCGAT GTAGCGCATG GCAGACTTGA TGTCTTTCCA GCCTACATAG GTCATCAAGG CCTTGAGATC CCAGCCATTT 12800
GCCGTGGCCC AAGAGGCGAA GCCACGGCGC AGCGAATGGC TGGTGTACAG CTCGGCCGAT ATACCGGCGC GCTGTAGGAT CTGGCGCAAC AAGCTGATCA 12900
GGCTGCCGGG ATGCAAGGCC TCGTCGCTCA GGTGCCCCCA GCGATCCAGG CGACAGAACA CTGCACCACG GGCAATGCCG GCGGCACTGA TCCAGTCGAG 13000
ATAAGCCTGC ACCGGGCAGA GGCACTTCAA GGCTGGTACG TAATGAGTCG TGCCGAGGTT GTCCCTGTCA CCCTTACTTT GTGGCAGGAA CAGGCTCATG 13100
CCCGCACCGG CTTCGGCCTG GATATGTTCG ACCTGCAGCC GACAGAGTTC GTCACTACGA AAACCCCGCC AGAAGCCGAT CAGCAGCAAC GCCGCATCGC 13200
GCCGGCTGCG AAGCAGGCTT GCCAAATTGC CGGACTGCTG AGCCTGTTCG GCTTCCCGAC TCAGCCATTG AATTGCTTGC TCCAAGTGCT GCAACTGCAA 13300
CGGCGCAGCC TGCTTCGTTT GCGCCGGATG CAATGTGCGG ATGCCTTTGA GCACCTGACG CACTGTGGGT GTCTTGGTCG GATCAGGAAA ACCTTGGGTG 13400
ATATGCCATT GAGCCAGGGC GGCCAGGCGC TGTTTGAGCG TGCTGAGGCT CAGCGTGTCG GCGTATTCCA CCAGGTAGCG CACGATGTTG TCGCTGGTGG 13500
CGGGCAGGAA GCCGCCCCAC GTCACTTCGA AGTGCTCGAT GGCCGATTGG TAGCTGCGGC GGGTGTTTTC CCGCGTACCA GCTTGTAGAT AGCGCCCGAC 13600
GTCTTTCATC GCCCGAGGTT GCCCTTTGTG TACTGGAAAA CGGCTGCCAA ACGACCGTTT TTGCCTTTCG TATTGAATAA CACTCCATTA TTTTATCTGA 13700
TTTATTTGCT TTTAACTGGC TTTACATCAA TCAAATTTAG TATGTAAATA CATACTATGT AATCTACTAC GAAATCGTAG GAGCAGACCA TGGCCCGCGG 13800
CGGCATCAAC AAGGCACTGG TTCAGAAGGC GCGACAGGCG ATCCTGGCGC GGGGCGAGAA CCCAAGCATC GACGCGGTAC GGGTCGAACT TGGCAATACC 13900
GGCTCGAAAA CCACCATTCA CCGCTACCTG AAAGAACTCG AAGACGCCGA GCGCGGCCGA AATACCGCCG CGATACCGCT CAGCGAACAG TTGGCCAACC 14000
TGGTCGGCCA ACTGGCAGAT CAGCTAGAGG AGGATGCGCA GGCCACCGTG GCCCAGGAGC GCGAACAACT ACAACGCGAA CGGCTCGATT ACCAGAACCA 14100
AGCTCGGCTG GCCGAAAGCC GAATCCAGCA GTTGGAAAGT CAGAGCAGCG GGCTCACGGA ACAGCTTCAG GCTGTTCAGC AAGCGCTACA GCAGGAACAG 14200
CAGCAACGCC AACAGACCGA GGTTGAGAAT GCCCGCTTGG CGCAGGCTAA CGGCGATCAG GAGGTGCGCC TGCAGGATCG CGACAGCCAA ATTCGCTCGC 14300
TGGAGGAAAA GCATCAACAT GCCCGTGATG CTTTGGAGCA CTATCGTCAG GCCAGCAAGG AGCAGCGCGA GCAGGAACAG CGTCGACACG AGTCGCAGGT 14400
GCAACAACTG CAACTGGAAC TGCGGCAACT GCAGCAGACC TTGATAATCA AGCAGGACGA ACTGACGCAG CTGAACCGCG ACAATGCACG CTTGCTCACC 14500
GAGGCGCGGC AGTTACAAAA AGAGCAACAT GCGCAGCAAC AGCTACTGGC GCAGAAAAAT CAGGCCATGG AGGCCTTGCA GAGCGTACTG GCCGGTTCCG 14600
AACGCTCGAA TGAAGCCCTT GAACAGCGTT GTCGCACGCT GCAGGAGGAG GTGTCCCGGC TGGGCGAAGC CTCCGCGACT CTGGCGCAAC AAGCGCAGGG 14700
CCTGCAGGAG CGCTTGGTCG AAGCCAATAC ACAGTTGAAG CTACTCAGGG CACCACTTGC GAACAGCGAT GGCGCACCCG AGCACATGAA CCGGCACACA 14800
TGAGTCCATG TGCTGAGTGG AGGTGAAGAT GACACTAATT GAGACTGCCA ATGAGGGGGC CGCGGAACCT GTCCGTTTGA CTACACCGCT AGGCCAGGCC 14900
ATTGGTAATC TGTTCGCCCG GGCCTTGCCG CTACTGGATG GCAACCCTCC AGGCTCGCTC AAGGTCTTCG TCTTCGGCGG CTGCGCGGTG CACCTGCTCA 15000
CCCATGCGCG TGGTAGTGCG GACATCGATG CGGAGATCGA GGCGGCCCGC GTGCTGCGTA AGGACGAGAT CATGGCCGTC TACACACCGC CAGAGGGTTA 15100
TGAGGACAAG CGACGGCCGC GACTTGCAGG TTTACCTGGA TCAGAACTAC ACCAATGCCC TCGGGCCACT GCACGAGGAC TACCGCGAGC GCGCCATCCC 15200
CATGGAGGGT TTCGAGGGTG AGCAGCCGCT GCACATCTTC GTTGCCGCCG GCGTGGATCT AGCAATATCC AAACTCGGCC GCTTTACGGA AAACGATCAA 15300
TCTGATATCG AACAGCTCAT CGAGTGCGGC CGTGTCGATG TCGGCCAGTT TGTTACACTG GCAACAGAGG CAATCGATTA TGCCGTGGGC AACCGAAGTG 15400
CAATGCAAGG CTGCCTAAAA TTGGTCACAG CGAAGTACCT GGAGGATAGG CGAGATGCCA CGCCTGGATC GTAAACAAAG CTTTGGCGCG CTCCTGGAGA 15500
CTGTCACCCA GCAGCGCCTT AGCCAAGTTG CGTCCGATGC GTCTTGTGGA GCTCGCCAAG CAGTTGTGGT ACGAAGAGCG CGACCTCGTG CCGGTCCTGC 15600
AGCGTGAAGT GGCGGGCAAG CTGCGCAAGC CTGAACAGAA GCTGCGAGCC CTCTATCTGG TCGACCTGCT GCGTCGCTTT CCCTGTGTAT CAACGGAAAA 15700
AGCCGCGCGC CTAAAAGGCT TTGTCAGCAG TTGGTCGAAC CTGAAACCGG CTGAACGCTC GCCGCGGGCG ACCCAGTTGG TCTCTCGCTA CAAGCTCGAC 15800
AAGCTGGCCT ATGAGTGGGG GCTGGAGGAA GACGTCAGCA AGCAGATGCA GGATGTTCTG GCTTTCCAAA CTCGCCATTA CGCTGCCTCT CAGGGCGTGA 15900
AGACGGGCTA TTCAGAGACA GCGCCCGTCG GTTAGCAGCA GGGCACGGCA AAATGGACTC GGAATGACCA ACTCAACAAA TGACGACCGA CGATTCGCTG 16000
ATCTAACGCG CGAGGCATTA GCTGACGTGA GCGCGGGTTT GGTGATTGAT CACGAATTGG TCGAGATTTG GGCCCAGAGC CTTGATACCG ATACCTCAGT 16100
GTCTTTACCT ACTCCAGATC GGCCTACTTA ATTCGCACCA GGCTGAACTC ATCCTCATTT TTGCCTTATC TAGGCTTGCC CTGTGCGCGT GGAGCAACCG 16200
CATAAATATT TAAATAAGAT AGAAACGAAG TGAGTGAATA TTCATCTTAT CTCGGCATGC CCCCTATACC TGTACGAGGC CGCTCTTCGT TTGTTCAGTG 16300
TCAGAATCGT TGCTAGGTTT CTGACATATT TCAATAAAAT TAGCCATGAC CATGAAATCC CTTCCCGAGA CCATCGTCGA ACACTGCAGG CTTCTCCCTG 16400
AAGGAGGCAT TCTTGCACCA AACGAATTCC TTCATTTGGC TAGCCGCGCA GCGGCTGGAC CAAGCATTCT CTCGATTAGC CAAAGGAGGG GAGTTGATGC 16500
GAATCTCACG TGGCCTCTAT GTGGCGCCGG TCACTGGGCG CTTCGGCAAA CGTGCGCCGG CGACGGAGAA GGTCATTAGT GCGATAGCTT CGAAAAGCCA 16600
TCAGGTAATC GCTTTAAGCG GTGCCCGCGC AGCGAACCTT CTAGGGCTAA CGCAATAGGT GTCGATTAGG GAAGTATTTG TTACCGGCGG ACGGCCGAGA 16700
ACCCTGCAGT TAGGCAAGGC TCAGGTAATA ATCGAGCATG CGCCGCAGTG GCAAATCGCT CTCGGAGCGA CCATTGCTGG CGACGCTGTA CGTGCGCTTG 16800
CCTGGCTGGG AAACCTCACG CCCAAGAGGC AGTCGCCAAG CTGCGCACGT GCCTGTCGAG TAACGATTGG CAGATTTTGA TATCGCATAG ATCAAACCTT 16900
CCTCAATGGA TGGCTGAAGC GATTGGGCGC GAAGCAGTCT TTGCTGAGCA GGGCTTCTAA TCTACTCGTT TAAATACAAT AGCTTAGAGA ACGAATGTCC 17000
TAATTTTTGC CTTATCTCGG CATGACCCC
|
|
|
|
| Recombination Sites |
|
|
| Name |
Coordinates |
Gene |
Sequence |
| res |
13598-13800 |
203 |
GACGTCTTTC ATCGCCCGAG GTTGCCCTTT GTGTACTGGA AAACGGCTGC CAAACGACCG
TTTTTGCCTT TCGTATTGAA TAACACTCCA TTATTTTATC TGATTTATTT GCTTTTAACT
GGCTTTACAT CAATCAAATT TAGTATGTAA ATACATACTA TGTAATCTAC TACGAAATCG
TAGGAGCAGA CCATGGCCCG CGG |
| res_site_6 |
13663-13686 |
24 |
GCCTTTCGTA TTGAATAACA CTCC |
| res_core_IRR |
13688-13700 |
13 |
TTATTTTATC TGA |
| res_site_3 |
13708-13728 |
21 |
GCTTTTAACT GGCTTTACAT C |
| res_site_2 |
13732-13769 |
38 |
CAAATTTAGT ATGTAAATAC ATACTATGTA ATCTACTA |
| res_acc_IR1 |
13738-13746 |
9 |
TAGTATGTA |
| res_acc_IR1 |
13749-13757 |
9 |
TACATACTA |
| res_site_1 |
13780-13800 |
21 |
GGAGCAGACC ATGGCCCGCG G |
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnpA |
Tn4652 |
143-3157 |
Transposase |
|
+ |
| tnpC |
Tn4652 |
3166-3528 |
Accessory Gene |
Inhibitor |
+ |
| rcnA |
Tn4652 |
4084-5223 |
Passenger Gene |
Heavy Metal Resistance |
- |
| tnp |
IS1246 |
6288-7130 |
Transposase |
|
- |
| itaS |
Tn4652 |
8697-9599 |
Passenger Gene |
Other |
+ |
| tnpA |
ISPpu33 |
10034-10345 |
Accessory Gene |
Regulator |
+ |
| tnpB |
ISPpu33 |
10342-11247 |
Transposase |
|
+ |
| tnpT |
Tn4652 |
13790-14803 |
Accessory Gene |
Resolvase |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn4652 |
3015 |
143-3157 |
+ |
| Class: | Transposase |
| Function: | transposase activity (GO:0004803) |
| Transpoase Chemistry: | DDE |
| Comment: | possibly regulated by integration host factor upstream of feature |
Protein Sequence:
|
MCSMASVERT AYPILPSQLP AKELHRSYSL SDSEIEWVNN TAKSPALSIG LAIQLKVFQQ LHYFVPFEEL PQELISHVRQ CLRYGARIAP RYSNPRTLYR
HQAAVRQYLQ VTPFYSSDGL AVTEQIARDC AVVLEQRVDL INAMLDELIQ RGYELPAYST LNNLAETALA SAQEVTFNLV VTRAPIEVIY KLKELLDTDF
GRRQSDFNAL KQAPKKPSRK HLEVLIDHLA WLESFGDLEA IFEGIVDAKI RHFAAQAAAA DVSELKDCSL PKRHTLMLAL IYRMRVRTRD HLAEMFIRRI
STIHKRAKEE LEQIQARQRQ KLEQLAATLD GVVQILVQEP DDQEAGSLIR EYLSPDGNLD RLRETCAEVQ ATGGNNYLPL IWKHFRSHRS LLFRLSHLLQ
LEPTTQDRSL TQALQLIQDS ENLHREWIDE HVDLSFASER WVKVVRRPSS EGPPTNRRYL EVCVFSYLAS ELRSGDMCVQ GSVSFADYRK QLLPWEECLQ
RLPAYCEKMG LPGTAKEFVA SLKTQLEETA QQLDEKFPSC RGDVSINEAG EPVLRRVAAR DIPPSAISLQ TALMQRMPAR HVLDIMANIE HWIQFTRHFG
PMSGNEPKLK EPAERYLMTI FAMGCNLGPS QAARHLTGNV TPHMLSYTNR RHLSLEKLDK ANRELVELYL QLDLPKLWGD GKAVAADGTQ FDFYDDNLLA
GYHFRYRKMG AVAYRHVANN YIAVFQHFIP PGIWEAIYVI EGLLKADLSV EADTVYSDTQ GQSATVFAFT HLLGINLMPR IRNWRDLVMC RPDRGASYKH
INRLFTDTAD WNLIETHWQD LMQVALSIQA GKISSPMLVR KLGSYSRRNK LYHAAQALGS VIRTIFLLNW IGSRELRQEV TANTNKIESY NGFSKWLSFG
GDVIAENDPD EQQKRLRYND MVASSVILQN TVDMMRILHK LAREGWQFTD EDVSFLSPYL TSNVKRFGEF NLKLNRPPEP WIKDSVFQQA AGSLRANTAS
KTGA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpC |
TnpC |
Tn4652 |
363 |
3166-3528 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Inhibitor |
| Function: | tpnA repressor protein, at post-transcriptional level |
Protein Sequence:
|
MIEIPPATFR VTPYGEVDGV ALDKLRASFD TSQLLRLVDQ FDACLAELGG VVAVRDELLK LHAMALTLVE GVPLTVPTEN ACIWTEAESL QQNLETLAGW
VRSAQAGIIP LVNLAPDHEQ
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| rcnA |
RcnA |
Tn4652 |
1140 |
4084-5223 |
- |
| Class: | Passenger Gene |
| Sub Class: | Heavy Metal Resistance |
| Function: | Nickel cation transmembrane transport (GO:0035444) |
| Target: | Nickel |
| Comment: | conserved domain Pfam: PF03824 |
Protein Sequence:
|
MSSFAELLQQ GASQAWLYFP SAILLGALHG LEPGHSKTMM AAFIVAIRGT VKQAVLLGLA STLSHTAVVW LVAMAGMYLG QNLNAETTEP YFQLASAAII
ITIALWMLWR TWRGEQMWRF EEGDDLQHDY HHHDEMQRID TGHGRIELSI FEEGVPPRWR LNILTGHAWS AAEMSLLTTR PDGLAQQFRF VDRGDYLESV
DEIPEPHEFT ARLSLGHAGH SHDYDLEFHE HGHGHGHDHA ELEGLELSLE GYQDAHERAH ANDIRKRFSN RNVTTGQIIL FGLTGGLIPC PAAITVLLLC
LQVKEVALGA VLVLCFSIGL AITLVTVGAA AAIGARQASN RWPWLGAVAR RAPYLSSLLI IGVGIYVGVH GWIGPERLA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS1246 |
843 |
6288-7130 |
- |
| Class: | Transposase |
| Function: | Transposase activity (GO:0004803) |
| Transpoase Chemistry: | DDE |
| Comment: | two transposase domains PF01609 and PF05598||similar to open reading frames of insertion sequences IS1168 and IS1186 and to protein encoded by GenBank Accession Number M11585 |
Protein Sequence:
|
MVRILVLKRL YNLSDEQMEY QLLDRMSYKR FCGLASAVNI PDRTTVWTFE NRIGDAGAKV LFDGVTAQLL RHGFIARGGQ IVDATLVPAP KQRNSREENK
LVREGAMPAN WKPAKRRQKD TDATWTQKHG KNHFGYKLSV NVDKKYKIIR KFETDTASVH DSKHFDALID RSNTSRDVYA DRGHTSADRE GWLKDHGYRN
QIQRKGYRNK PLSECQQRRN HRIAKTRARV EHVFASIEQM GGKLIRTIGQ GRANFAMTMM AACYNLKRLV YFQKAGIKAF
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| itaS |
ItaS |
Tn4652 |
903 |
8697-9599 |
+ |
| Class: | Passenger Gene |
| Sub Class: | Other |
| Function: | Sulfuric ester hydrolase activity (GO:0008484) |
| Sequence Family: | sulphate esters (Interpro: IPR000917) |
| Comment: | similar match with LTA Synthase (WP_023445412.1) |
Protein Sequence:
|
MPADQATTLT RDLLFTEHDR LADQNTAAIR RDFQPPQDRR LPIRNVVVIL MESFAGHFVG ALGSEAGITP NFDRLAQEGV LFRRFFANGT HTHQGMFASM
ACFPNLPGFE YLMQTPEGGH QFSGLAQLLS TRDFDDLYVY NGDFAWDNQR GFFSNQGMTR FIGRNDFVDP VVSDPTWGVA DQDMFDRAAE ELFKQDPKKP
FYALLQTLSN HTPYALPGVL PVEPVTGQGS LDQHLTAMRY SDWALGRFFE KARKAPYFKD TLFVVVGDHG FGAQEQLTEM DLYPVIPPEN QALVRSRIFS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
ISPpu33 |
312 |
10034-10345 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Regulator |
| Function: | transposase activity (GO:0004803) |
| Comment: | similar to transposase subunit of insertion sequence IS401 from Burkholderia cepacia 17616 |
Protein Sequence:
|
MSKHTKFSPE VRDRAIRMVY EVRESRTSQW AAIEAVASKI GCTAQTLSSW IRKAAAPAAP SASGTDARVK ELEREVRELK RANEILKVAS AFSAQAELDR
RLK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpB |
TnpB |
ISPpu33 |
906 |
10342-11247 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
| Comment: | 100% match to end 226 amino acids referenced in ORF2 of ISFinder||orfB |
Protein Sequence:
|
VIWQLIDKHR QSFGVEPLCR VLQVSPSAYR RHAARLRDRS RRSARAIRDE ELAVQIHRVW QENYEVYGAR KVWRQMHREH QVVARCTVER LMREMGLCGV
TRGKTVKTTQ PDPDNANPRD LVKRQFTAER PNQLWVADFT FVSTWQGFAY VAFIVDVYSR FIVGWRVSRH MRTEFVLDAL EQALHTRRPE PHRLVHHSDR
GSQYLSIRYS ERLGEAGIEP SVGNTGDSYD NALAETINGL YKTELIHKRG PWKSVDSLEW ETLKWVTWFN HQRLLEPIGN RPPAEFEALY EQSQATISVA
A
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpT |
TnpT |
Tn4652 |
1014 |
13790-14803 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Function: | possibly involved in cointegrate resolution |
| Comment: | orfT |
Protein Sequence:
|
MARGGINKAL VQKARQAILA RGENPSIDAV RVELGNTGSK TTIHRYLKEL EDAERGRNTA AIPLSEQLAN LVGQLADQLE EDAQATVAQE REQLQRERLD
YQNQARLAES RIQQLESQSS GLTEQLQAVQ QALQQEQQQR QQTEVENARL AQANGDQEVR LQDRDSQIRS LEEKHQHARD ALEHYRQASK EQREQEQRRH
ESQVQQLQLE LRQLQQTLII KQDELTQLNR DNARLLTEAR QLQKEQHAQQ QLLAQKNQAM EALQSVLAGS ERSNEALEQR CRTLQEEVSR LGEASATLAQ
QAQGLQERLV EANTQLKLLR APLANSDGAP EHMNRHT
|
|
| Internal Transposable Elements (TE) |
|
|
| TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
| IS1246-L11583 |
IS1246 |
Insertion Sequence |
6125-7399 |
1275 |
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| IRR |
IS1246 |
6125-6174 |
GGGCACCTCG AATAACGCGA GGTTTTCAGT GAATCCGACC GCCAAATGAT
|
| IRL |
IS1246 |
7350-7399 |
CTGTTGCGTT AAAATGGTTA GCGTCCCCCG GCTCCAAAAA GCTCCACGGG
|
| IRL |
ISPpu33 |
9981-10006 |
TGAACCGCCC CGGGTTTCGC GGAGGC |
| IRR |
ISPpu33 |
11261-11286 |
CGGAGGCGCT TTGGGCCCCG CCAAGT |
|
| References |
|
|
| 1. | Hõrak R, Kivisaar M. Regulation of the transposase of Tn4652 by the transposon-encoded protein TnpC. J Bacteriol. 1999 Oct;181(20):6312-8. doi: 10.1128/JB.181.20.6312-6318.1999. PubMed ID: 10515920
| | | 2. | Kivistik PA, Kivisaar M, Hõrak R. Target site selection of Pseudomonas putida transposon Tn4652. J Bacteriol. 2007 May;189(10):3918-21. doi: 10.1128/JB.01863-06. Epub 2007 Mar 9. PubMed ID: 17351034
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