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Internal Transposable Elements | |
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Internal Repeats | |
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Name: Tn3434 |
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Family: Tn3 Group: Tn5393 |
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Evidence of Transposition: yes |
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Host |
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Host Organism: | Paracoccus pantotrophus DSM11027 | | |
Place of Origin: | Poland | Date of Isolation: | 2003 |
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Map |
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Terminal Inverted Repeats (IR) |
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IRL (Length: 39 bp) | | GGGGTCTGATGCCGGAGAGTGCAGAATCCCACGCTAAGC |
IRR (Length: 38 bp) | | GGGGTCTGATGCCGGAGAGTGCAGAATCCTACGCTAAG |
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Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTCTGAT GCCGGAGAGT GCAGAATCCC ACGCTAAGCG CTGAGAACCC GTTTCCCGTA ATCGCGTAGA TTGCCGTTCG GGTCGACATA TCGGTAGAGT 100
GTGACCGGTT TGACCCCCAA TTCCTTACAG AGTTCTGAAA CCGATGTGTC GCGGCTAGCC ATTGCGGCCT GAGCCATGCG GACCTGCGCT TTCGTCAGCG 200
CAAACTTTCT TCCTCCCTTT CGGCCGCGCG CGCGGGCGGC TTGGAGCCCC GCCATTGTGC GTTCGCGGAT CAACTCGCTT TCAAATTCGG CAAGCGCAGC 300
AAAGATGCCG AATGAAAGCC TTCCAGCCGC AGTCGTTGTG TCAATCTGCG CCCCTTGCCC GGTGAGAACT TTGAGGCCAA CGCCACGCTC GGACAGCATG 400
CTGACGGTTT TGACAAGGTG GTGGAGGCTG CGCCCCAAGC GGTCGAGCTT CCACACGATC AGCACATCCC CCTCACGCAA TGCTTTGAGG CAGGCCTCCA 500
GACCGGATCG GTCATCCTTC TTGCCGGACG CCAGATCTGA GTAGATCTGG TCCTCCTCGA CGCCGGACGC GATCAATGCA TCTCGTTGCA AGTCGAGGGA 600
CTGGCTGCCG TCAGCTTTCG AAACCCGCGC ATAGCCGATC AGCATGTTTC ACAAACGTTC GTTTGAGGTG TTCTGGAAAG CGGCGCGCTT TCGGCCATCC 700
GAACAATTCC TTATTCAATA TCTTAATCAT CAATACGCAA ACCATATGTA GAAAGCAAAA GAAATATGGC GCATCGTACT ATCCTCACCG AGCGTCAGCG 800
CTCAGTACTT TTTGATCTTC CGATCGATGA AACGGCGATG TTGCGCCACT ACATCCTTGC GGACGACGAT CTGGAAATCA TCCGCGCCCG CCGCCGCCCC 900
CACAATCGTT TTGGGTTTGC TCTCCAGCTT TGCGCATTGC GCTATCCCGG TCGGTTGTTG ACCCCGGGCG AGGTCATTCC AATGGAGATC ACGCGCTTCC 1000
TGGCAGCGCA ACTTGGGCTG AAGTCAGACG ATCTGGCTGG ATATGCAAGC CGCGAAGAAA CGCGTCATGA ACACCTGGCG GCCCTGCGGG ATCTCTATGG 1100
CTACAAGATG TTCACTGGCC GAGGGTCGCG CGACCTGAAG GCCTGGCTGG AGAGAACAGC CGAAACCGCC CGATCGAACG AGGATTTGGC GCGGCGTTTC 1200
GTGGAACAAT GCCGGGCGAC CCAGACCATA CTACCGGGGA TCACGGTTAT CGAACGCCTT TGCGCGGATG CACTCGTTGC TGCAGAGCGA CGGATCGACG 1300
CTCGGATTGC CGACCGGCTG GATGATGAGA TGTGCAGCCG ACTTGACGCC TTGCTGACGG AAACGGCGGA CAGTTCTGTC ACCCGCTTTG TCTGGCTGCG 1400
CCAGTTTGAG GTGGGCCAGA ACTCGGCGGA CATGAACCGG CTGCTCGACC GGTTGGAATT CTTGCAGGCC ATGGCCGTGG ACAGAAGCAT CCTGTCGGGT 1500
GTGCCACCCC ACCGTATCGC GCGCCTCCGA AGGCAAGGGG AACGATATTT CGCAGGAGAT CTGCGGGATA TTTCAGGCGA CCGCCGCCTT GCCATCCTCG 1600
CAGTTTGCGC TTTGGAATGG CGCAGTGCCA TTGCCGATGC TGTGGTCGAA AGCCATGACC GGATTGTGGG GAAGACGTGG CGTGAGGCGA AACGCGTATG 1700
CGATGCTCGG GCAGATGACG CCAAGGCTGC TTTGAAAGAC ACCTTGCAGG GCTTCTCAAA TTTTGGATCA GCTCTGCTGG AAGCATATGA AGATCAGGCC 1800
TCCCTGATGG AGGCCGTCCA AAACGCCGGA GGCTGGTCAT CGTTGAGGGG GCTTGTTTCC ACCGCCGCCC AACTGACCGA CACATTGGCG GCTGATCCAC 1900
TGGCACATGT TGTTCACGGG TATCATCGCT TCCGACGCTA TGCGCCGCGC ATGCTCCGGG CGCTCGATAT TCAGGCGGCC CCGGTGGCCG AACCGTTGCT 2000
TGCCGCCGCC GACATCGTCG CGGGTACGGA AACGACAACT ACCCGGCCAC TGACCTTTCT GCGCCGGGCT TCGAAATGGC ATCGACACTT GAATCACGAC 2100
GATGGGAACC GGCTTTGGGA GGTGGCGGTC CTGTGCCACC TACGCGACGC ATTCCGTGCC GGCGACATCT GGCTCGCACA TTCCCGCCGG TATGGTGATC 2200
TCAAGGACGC GCTGGTTCCG ACGGAAGTTG CCAGGGCCAC GCCAAAACTG GCCATGCCGT TTGAACCGGA GCTCTGGCTC GCGGATCGAA AATCTCGCCT 2300
AGCAGATGGC TTGGAACGAC TGGCCCGCGC CGCCAGGGCG GGTGCCATTC CGGGAGGTTC TATCGAAGAT GGCGTGCTCA AGATCGACCG TCTGACGGCC 2400
GCTGTCCCCG AAGAGGCCGA TGCCATGGTG CTCGATCTCT ACAACCGCCT GCCAGAGATC AGGATCACAG ACCTCCTGCT CGAAGTGGAT GACGAGATCG 2500
GCTTTACCGA GGCCTTCACC CATCTGCGCA CCGGCGTTCC ATGCAAAGAC AGGGTCGGCA TGTTGAACGT GCTGCTGGCT GAGGGGCTGA ACCTTGGCCT 2600
CAGCAAAATG GCTGGGGCCA CGAACACCCA TGATTATTTC CAGCTCTCGC GCTTGTCGCG CTGGCATGTG GAAAGCGAGG CGATGGCACG CGCCTTGGCC 2700
ATGGTGATCG AAGGTCAATC TGCCTTGCCG ATGGCCCGGT TTTGGGGCGC AGGGCAGACC GCTTCGAGCG ACGGGCAATT CTTCCCGACC ACGCGCCAGG 2800
GCGAGGCGAT GAACCTGATC AACGCCAAAT ACGGCCATGA ACCCGGTCTG AAAGCCTATA CCCATGTCTC TGACCAGTTC GGCCCTTTCG CCACCCAGAC 2900
CATCCCGGCC ACGGTGAACG AGGCCCCTTA CATCCTGGAC GGCCTGTTGA TGACAGACGC AGGTCAGAAA ATCCGCGAAC AGTATGCCGA CACGGGCGGC 3000
TTTACCGACC ACGTCTTCGC CGTCACTGCC CTTCTGGGCT TTCAGTTCAT CCCCCGCATC CGGGATCTGC CATCCAAGCG CCTCTACCTC TTCAATCCGG 3100
CATCCTGCCC GAAAGAATTG AAGGGGTTGA TCGGCGGCAA GGTCAGGGAA CCTGTCATCA GCTCGAACTG GCCCGACATC CTACGCGCAG CGGCCACCAT 3200
GGTGGCGGGC GCGATGCCGC CAAGCCAACT CTTGCGAAAA TTCGCTGCAT ATCCCCGACA GCATGAACTT GCGGTCGCAT TGCGCGAAAT CGGCCGGATC 3300
GAACGGACGC TGTTCATCAT CGATTGGCTG CTGGATGCCG ACATGCAACG CCGTGCCCAA ATCGGCCTGA ATAAGGGCGA AGCGCATCAT GCGCTGAAAA 3400
ACGCCCTGCG CATAGGGCGC CAAGGTGAAA TCCGTGATCG AACAGCCCAA GGCCAGCACT TCCGAATGGC CGGGCTGAAC CTCCTCGCCG CCATCATCAT 3500
TTACTGGAAC ACCAGACATC TCGGTCACGC TGTCGATAGT CGCCGCAGTG ATGGTTTGGA CTGCTCAGCA AACCTTCTGG CGCATATTTC ACCCCTCGGG 3600
TGGGCGCACA TCCTTCTCAC CGGTGAATAC AGGTGGCCCA AAAGATGACC AAACGGCCTT AGCGTAGGAT TCTGCACTCT CCGGCATCAG ACCCC
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Recombination Sites |
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Name |
Coordinates |
Gene |
Sequence |
res |
646-765 |
120 |
GTTTCACAAA CGTTCGTTTG AGGTGTTCTG GAAAGCGGCG CGCTTTCGGC CATCCGAACA ATTCCTTATT CAATATCTTA ATCATCAATA CGCAAACCAT ATGTAGAAAG CAAAAGAAAT
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ORFs |
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Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
tnpR |
Tn3434 |
34-645 |
Accessory Gene |
Resolvase |
- |
tnpA |
Tn3434 |
766-3648 |
Transposase |
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+ |
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpR |
TnpR |
Tn3434 |
612 |
34-645 |
- |
Class: | Accessory Gene |
Sub Class: | Resolvase |
Function: | resolvase |
Transpoase Chemistry: | Serine |
Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
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MLIGYARVSK ADGSQSLDLQ RDALIASGVE EDQIYSDLAS GKKDDRSGLE ACLKALREGD VLIVWKLDRL GRSLHHLVKT VSMLSERGVG LKVLTGQGAQ IDTTTAAGRL SFGIFAALAE FESELIRERT MAGLQAARAR GRKGGRKFAL TKAQVRMAQA AMASRDTSVS ELCKELGVKP VTLYRYVDPN GNLRDYGKRV LSA
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpA |
TnpA |
Tn3434 |
2883 |
766-3648 |
+ |
Class: | Transposase |
Function: | transposase |
Transpoase Chemistry: | DDE |
Comment: | identical to tniA (Tn1721) |
Protein Sequence:
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MAHRTILTER QRSVLFDLPI DETAMLRHYI LADDDLEIIR ARRRPHNRFG FALQLCALRY PGRLLTPGEV IPMEITRFLA AQLGLKSDDL AGYASREETR HEHLAALRDL YGYKMFTGRG SRDLKAWLER TAETARSNED LARRFVEQCR ATQTILPGIT VIERLCADAL VAAERRIDAR IADRLDDEMC SRLDALLTET ADSSVTRFVW LRQFEVGQNS ADMNRLLDRL EFLQAMAVDR SILSGVPPHR IARLRRQGER YFAGDLRDIS GDRRLAILAV CALEWRSAIA DAVVESHDRI VGKTWREAKR VCDARADDAK AALKDTLQGF SNFGSALLEA YEDQASLMEA VQNAGGWSSL RGLVSTAAQL TDTLAADPLA HVVHGYHRFR RYAPRMLRAL DIQAAPVAEP LLAAADIVAG TETTTTRPLT FLRRASKWHR HLNHDDGNRL WEVAVLCHLR DAFRAGDIWL AHSRRYGDLK DALVPTEVAR ATPKLAMPFE PELWLADRKS RLADGLERLA RAARAGAIPG GSIEDGVLKI DRLTAAVPEE ADAMVLDLYN RLPEIRITDL LLEVDDEIGF TEAFTHLRTG VPCKDRVGML NVLLAEGLNL GLSKMAGATN THDYFQLSRL SRWHVESEAM ARALAMVIEG QSALPMARFW GAGQTASSDG QFFPTTRQGE AMNLINAKYG HEPGLKAYTH VSDQFGPFAT QTIPATVNEA PYILDGLLMT DAGQKIREQY ADTGGFTDHV FAVTALLGFQ FIPRIRDLPS KRLYLFNPAS CPKELKGLIG GKVREPVISS NWPDILRAAA TMVAGAMPPS QLLRKFAAYP RQHELAVALR EIGRIERTLF IIDWLLDADM QRRAQIGLNK GEAHHALKNA LRIGRQGEIR DRTAQGQHFR MAGLNLLAAI IIYWNTRHLG HAVDSRRSDG LDCSANLLAH ISPLGWAHIL LTGEYRWPKR
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References |
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1. | Bartosik D, Sochacka M, Baj J. Identification and characterization of transposable elements of Paracoccus pantotrophus. J Bacteriol. 2003 Jul;185(13):3753-63. doi: 10.1128/jb.185.13.3753-3763.2003. PubMed ID: 12813068
| | 2. | Mikosa M, Sochacka-Pietal M, Baj J, Bartosik D. Identification of a transposable genomic island of Paracoccus pantotrophus DSM 11072 by its transposition to a novel entrapment vector pMMB2. Microbiology (Reading). 2006 Apr;152(Pt 4):1063-1073. doi: 10.1099/mic.0.28603-0. PubMed ID: 16549670
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