Transposon
Name: Tn1546.1_p
Family: Tn3        Group: Tn4430
Evidence of Transposition: no
 Host     

Host Organism:Enterococcus faecium VREfm 320/07
Place of Origin:Sao Paulo, Brazil Date of Isolation:2015

 Map     



 Terminal Inverted Repeats (IR)     

IRL (Length: 38 bp)GGGGTACCGTCAGGAAAATGCGGATTTACAACGTTAAG
IRR (Length: 24 bp)GGCTCTTTGTCAAATGATGTTGGT

 Sequence     
DNA SequenceLength  12854 
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TTAGTTTGGG GGTACCGTCA GGAAAATGCG GATTTACAAC GTTAAGGAAA TTTATTAAAG AGACCAATTC CTCAGCACTA AAATTGATAA TTGGGCTTTC 100
TTTGTTACTA TAGTGTTAGG TAAGCTTTTT ACTTTATCAC CGGTTTTCCC CTCACTTCAC ACCTACGGGC GAGTTTCCCC ACATCCCGTT TTCCATCTAA 200
TCCAATTCAT TCAATATCTT TATGTGTATG AAAGATCAGA TTGCTTGATT TAGACATCTT ACACGTAATT TATTCTTAAA TGGGTACGGT AAACGAGCAA 300
TAATACGAGC AAAAGTATAC CTACAAAAAT AATAACTCTG TCTAATTTTT TTTGATTCAT ATGCTTATTG CTTAAACCAT ATAATTTCAG TCCAAGAAAG 400
CCTCCAACAG TATTTGTAAT TACATCTGTT ATGTCTGTCG CTCCAATAGC GAAGATAAAT TGAATTATTT CAAAAGTAAG ACTTAAAACC AGTACAAAAG 500
CAAACTTAGG TAAAAATCCG ATTTCTTTAA AATTGACATT CAAAAGCAAG CCAAATGGAA TAAAGATTAT AACATTATCT ATCATCTCTC TGAAATTCCC 600
AGTAGCAGTA AATGGAGTCA AGTTAAGACT TCTTTGATGA TAATTAAATA CTGATAAAAT ATTGTATTGT AATTTGAATA ACACTAACCA GATTAGTGTC 700
ACTAAATATA AAGCTAGCAA TCCTCTAGAT AATATTTTTC CCAATATAAT TTCCTCTAAT TCTTTTGTTT AAGTTGTATC ATTAGTATAG CAATGTCCTA 800
GTTAACGTGG GTTTTAAATT AAAAAGCTAA CGTTACCCCA AAAGTGCTAG TACAATAATG CTGTTCATTA ATTTCGTTGG TTTCATTCCG CCATCCTTAC 900
CTCCTTGAAT TAGTATGTGT TGATCCGGGA AACACTGTCA CAATTACACC GTCTATATTG TTTCCTGATA TCTCATAACG AAGATTAGTC GGCACATGAA 1000
TGGTGGTATT TTTAGTAACA GGATAATAAA AGATCTCATA TTTTTCCCCA TTTACACTAA CAGAAATGGT TTTTTCTTCT TTTAGGTAAT CCATATATTC 1100
CTCGAGAACG AAATTCTTTT CTTTCATAAT CGCACTATGT GGTAAACCAA CATAGCGAAT ATGCCATGGT TCATATTGAA TTCCTGTTAA CTCTGTTTTG 1200
TCCTCTGGAT AACGTAAAAT GAACCCGTAT TTCCAAGCAT TTTCTTCTAT CCACTTTCCT TCAGGGGCTC GTTCCATTTT CGTCAAGCTT GATCCTACAT 1300
CTAGTGATAA ACCTGAATTA TGCTCACTAT AACCTGCTGG TAAGGCATAC TCAGCCCCCA TTTCTTGGTA AAGCACACTT TGCTCATCAA AGTCTCGATA 1400
GCCACTATTA ATAATAAAAT GACTAACGCC ACCCTTTACA GCATCATTGA CCATCTCTGA AAATTTTTGT GCTATTTCTT TTGACATATA AATATTACTA 1500
TCAAGCAACC CGTATCCATT TATTAATTCG TCATGTTTAG ATAAATTCAC GATATCTGAC TTCACACTTT CTTGGCGAAC AGGATATTTA CTATTGATTA 1600
ATAGCAGATT TCCTTGATAA ACCTGTTCTT CTGTAATTGT TTTCTCTTGG GTATTTTCAG AAGTCCCACT ATTTTCTAAA TGTTCTTTGG GATTTTGATC 1700
ATAATTTTGA AATTCGACTT TTTCCTGAGA AAACAGTGCT TCATTAACGT AGTCATAACC TAAGTATATT AAGAATAACA ATAACAATAA AAAAAACAAC 1800
TTCTTCATTT TCAGTCTCCT CCTTAACTAT ATAGTTGGAA GTATGAAATA TTTCTAGAAT CTTCCCCTTA AACGGCACAA TCTCGTTTGA GATTGTGCCG 1900
TTTTGCCCCG TAAATTACAG TCAATTATTT CGCCCTACTG GATTTACTAT TATCACCAAT GTAGATGAAT TTTCATAAGT GATACCCATG CTGAATTTAA 2000
CGAGGCTGAA CTGCCTGTTG ACAATGGGCG GTGTGAAATA CCACCCCTCT ATGCGATCAG TCTTATTATC AGGCTATCTT GCCGCAGCGC ACGCAGATAA 2100
TGACCGCAAT ATCGCTCTGC CTTACATCTT CAATGGTTCT GTTGCAAAGT TTTAAATCTA CTATCAAATA AGGTAGAATA ATAGAAAAAG ATAGCAGGAG 2200
GAATGACGAT GAATCATTTT AAAGGAAAGC AATTTCAGCA GGATGTGATT ATTGTAGCCG TGGGCTACTA TCTTCGTTAT AACCTTAGCT ATCGTGAAGT 2300
TCAAGAAATC TTATATGATC GTGGCATTAA CGTTTCTCAT ACGACGATTT ATCGTTGGGT GCAAGAATAT GGCAAACTAC TCTATCAAAT TTGGAAAAAG 2400
AAAAATAAAA AATCCTTTTA TTCATGGAAA ATGGATGAAA CGTACATCAA AATTAAAGGA AAATGGCATT ATTTGTATCG AGCCATCGAT GCAGATGGTT 2500
TAACCTTGGA TATTTGGTTA CGTAAAAAAC GGGACACACA AGCAGCCTAT GCTTTTCTTA AGCGGTTAGT GAAGCAGTTT GATGAACCGA AGGTTGTAGT 2600
CACAGATAAA GCCCCCTCTA TTACAAGTGC CTTTAAGAAA CTAAAAGAAT ACGGCTTTTA TCAAGGGACA GAACATCGTA CCATTAAATA CCTGAATAAT 2700
TTGATTGAAC AAGACCATCG TCCAGTAAAG AGACGCAATA AATTCTATCG AAGTTTACGC ACTGCCTCTA CCACGATTAA AGGCATGGAA GCCATTCGAG 2800
GATTATATAA GAAAACCCGA AAAGAAGGCA CTCTCTTCGG GTTTTCGGTC TGTACTGAAA TCAAGGTATT ATTGGGAATC CCAGCTTAAA TCATAGATAC 2900
CGTAAGGGAT TTTATTCTTT ATTTAAAACT TTGCAACAGA ACCGTTTGTC CGTGCAACGG TTAAAAGTTT ATTTAACGGG GAAATCAAAA TAGCTATTGG 3000
GGTATGGTTC GTCTCTTAAT ACATAGTGCC ACCATTCGAG GCTATATGCT TCAAACCCAC TGTTTTCCAT GATGGAGCGC AAACGTCTGC GATTTTGCGC 3100
TTCATTGCAT GATATTCCAT TTGCCGCATG ATGAGAGCGT TCATCCATAA AATCAAATCG GCTCCCCATT GGTACAAGCT CACCCGTGTC TAATCGATAA 3200
AGCGTAAGAT CAATGGCACT GCCGCGGCTA TGGCTTGATT TTGAAGCCAC GTATCCTTTT GAAATCATCT CAGTTCGGTC AATATTGGGA TAATAACTTT 3300
CCTTTGTCAG GTTATTTTCC GGCTGTGCAG CCCATTGCAT AAAACAGTTT ACAGCACGAT TAGGACGGTA ACCGTCCCAT AGAAGCAATC CGTACCCTTG 3400
GGTAGCAGCC AGTTCTTTTG CCTTCAAAAG CGATTCAGCC AACTCGTATG TCCCTACAAT GCGATTTACT TCATAACCGT CAACCGGTTT TCCGGTGAAA 3500
TTATCCCAAG TGGCATATTT AGCGTCCCAA CGAACACCGT GTACTATTTC ATCTAAAAAA GTAAATCCTA TTTCCATGCT TATCACCCCT TTAACGCTAA 3600
TACGATCAAG CGGTCAATCA GTTCGGGAAG TGCAATACCT GCAGCGGCCA TCATACGGGG ATAACGACTG TATGACGTGA AACCGGGCAG AGTATTGACT 3700
TCGTTCAGTA CAATGCGGCC GTTATCTTGT AAAAACATAT CCACACGGGC TAGACCTCTA CAGCCGAGCG CTTTATATAT TTTTTTTGCC GTTTCCTGTA 3800
TCCGTCCTCG CTCCTCTGCT GAAAGGTCTG CGGGAACGGT TATAACTGCG TTTTCAGAGC CTTTTTCCGG CTCGACTTCC TGATGAATAC GAAAGATTCC 3900
GTACTGCAGC CTGATTTGGT CCACCTCGCC AACAGCTAAC GCGGCACTGT TTCCCAATAC CGCACAACCG ACCTCACAGC CCGAAACAGC CTGCTCAATT 4000
AAGATTTTGC TGTCATATTG TCTTGCCGAT TCAATTGCGT AGTCCAATTC GTCCGCGCTA TTGACTTTTT TCACACCGAA GGATGAGCCT GAACGCGCCG 4100
GCTTAACAAA AACAGGATAG GTAAACGTAG CTGCCACCGG CCTATCATCT TTATTAATAA CCCAAAAGGC GGGAGTAGCT ATCCCAGCAT TTTTCGCAAC 4200
GATGTATGTC AACGATTTGT CCATACAAAT TGCTGAGCTT TGAATATCGC AGCCTACAAA AGGGATACCG GACAATTCAA ACAGACCTTG TATGGATCCA 4300
TCTTCACCTG ACTTGCCATG CAAAGCTGAA AATGCTACAT CAACATGGTT GATTTCATAT TCATGGTTCT TTTTAACAAG TAATCCGTGC ATTTTTTTAT 4400
CCGGCGAGAG TACAGCTGAA TAGCAATTGT CGTTTTCCCA TTCCGCGCAA GGTTTTTCGC ACATTTTCCA TACACCAGAT TTCGTAATTC CAATGTATAA 4500
CGGCTCGTAT TTTTCTTTAT TAATGTTAGC GGCTATCTCT ATTGCAGATT TTACCGATAC GTCATGCTCC TCTGAGCAAC CCCCAAACAG TATTGCAACT 4600
TTTATTCTAT TCATGCTCCT GTCTCCTTTC AAAATCCAAA CAGTTTTTAA TGGTTTTTTC AACGGTATCA CGCAACGCTT GCTCGGTATA ATAGGCCGTA 4700
TGCGGTGTGA TTATCACGTT AGGCATTCTT TGAAGTTTAA GTAAAAATTG ATTATCAATT GGTTTTTGGG TGCAATCAGA GTAGAAAAAC TCTTCCTCTC 4800
CTTCCAATAC ATCCAATGCG GCACCGCCCA GTTTCCCGTT TTCTAATGCT TTAACCAACT CATAGGTATC TACAAGTGGA CCGCGCCCAG TATTGATAAG 4900
AAATGCTCCT TGCTTCATTC TCTGTATTTG TTCGTGGCTG ATAATATAGT GCGTATCCGT ATTGAGCGGC ACATGAAGCG TAACGATATC GCTATTTTGC 5000
AGCAACTCAT CAAACGGTAC ATAGTTTACC TCTATACTTC GGCTGCGACT ATAAGCCAAC ACTTTACATC CAAATCCTCG CAGCCGCTCA ATAACCGCTT 5100
TGCCTATCTG GCCCGTTCCC ACCACACCAA CTGTCATGTC GCTGAGTACC TTGCCACGGT CGCTGTCCAA CCTGAAATCA TGTTTTTCCA CAGAGCGCAC 5200
AATCGATTTT ACGTTGCGTA CTGCCATAAG AATTAGCATC ATAGTATAAT CGGCAACGCT ATCCGGCGAG TACGCCACAT TGTCGACAGT GATGCCCATT 5300
CTCTTAGCAG CAGTTGTATC TATATGATTG CAGCCGATGC TTCGGGTAGA AATATATTTC ACACCGGCTC TCTTCAGCGC AAGAAGAATA GAGGCGGAAA 5400
TCTCTGATTT ATGTCCCACA CTGATACATT GATTGAAAGG CGCGGATTTG GCGTTGGATT CCGACACGTT GGCGTTAATT ATCGTTGCCA TAACGCCAAA 5500
GCGAGGCGAA AGAGCATGGA ATGCATCTGC CTCATCCTGC TCACATCCAT AAACAGTAAT GCCGATGTTA TTCATAATTA AGACCAACCC TTTCTGTGAA 5600
AGGCACCAAA TAAAACGGGG ATGCCAATGG TAATCTTGTC AAATCTTTCT CTGAAGAACG AAAACGGCTC GTTCTTACGG TATTAAGTCT ACCGTGTAAG 5700
AACGAGCCGT TTCTTAATAT TAAATTGTTA ATTTCCTAAG AAAAAGTAAA GATAACCTTG AGATTTTCCT AAAAAATTAT GGCTCTATAC TTTTTGATGT 5800
TGGTGGATGA CACCAGCATC TTTTTTATTT TCCAAAACAT ATAGAAAAGA CACCTTGAAA TCCTTTAGAA TTAATTTGGC GAACCAACCC AAAAGGAGGA 5900
ATCAAGATGT CTTACACTCA CCTTATCAAA GAAACATTAG ATATTCTAGA CTTATCAGTT ACTTTTAACG AAAATTGTCT CACAAAAGAA AAATACAAAG 6000
GGCAAATCTG TCATATTTAT CGTGGAAACT TGATTTATAC AGCCCAAGAA TGCATCCACT GTAAACACCA GATTGCTTCA GATATTGTGC GTTGGGGTAC 6100
AACAACCGTC CGGTTGTTAA TGAACGATGT TTCTGAATAC CGTACCTACC TCGAATTGAA AAAGCAACGC TTCAAATGCA AAGCTTGTCA GCGGACCTTT 6200
GTCGCAGATA CTTCTGTTGC GAAAAAACAT TGTTTCATCA GTGAGAAAGT CCGCTGGTCT GTCATTGCTC GCTTAAAAAA GAATACTTCC ATGACGGAAA 6300
TCGCTCGTCA GAAAAATATT TCCACTTCTT CGGTCTATCG TGTCATGAAG CGATTCTACC GCCCATTGAA TCCTTTCAAA CAGACTTTGC CAAAGGTCTT 6400
ATGCTTTGAT GAATTCAAAT CGGTTCGAAG TGTTGCCAGT GCAATGAGTT TTATCATGAT GGACGGACAA AGCCATGCAT TATTGGATAT TGTCGAAAAT 6500
CGACGCTTGC CTTATTTAGA ACGCTATTTT TCTCGGTTTT CATTAGCGAC TCGTGAAGCC GTTCAATTGA TTGTTATTGA TATGTATGCG CCTTATGTTT 6600
CGTTGGTGAA AAAGCTTTTC CCGAAAGCTC AGTTGATCAT CGATCGTTTC CACATCGTCC AACATATTGG TCGTACCTTT CGCAATCATC GAATCAAAGA 6700
AACGAACCAA CTATTAAAAA GCAAAGAACA AAAACACTAT CAATTAGGTA AGCAATTAAA AAGATACTGG AAACTTCTTC AAAAAGATGA ACGCAAGCTT 6800
GATTATACTC GACGCCTTTG GCGACCTGGC TTCAAAGCTC ATTTAACAGA GACCGATATT GTGGATCGCT TACTGAAAGG GAGCCCTGCT TTGCGTGTAG 6900
GCTATCAGTT ATATCAAGAC TTTCTTTACG CTGTAAAGGA ACGAGACTAC GTATCGTTTG AAGAACTACT TACCAATAAT ATCATGCTTC CCGAAGGCTA 7000
TCAGACGACC TTGAGAACGT TCCAGAAATT TCTGCCACAA ATCAAAAATG CTTTACAACA AAGTTATTCA AATGGCCCAC TTGAATGTCT GAACAACCAT 7100
ATCAAAGTGT TAAAACGAAA TGCATATGGC TTTCGTAGCT TTTATAATTT CAAATTGCGC ATCATGATTC GTCATGGCAA CGCATTGATT TTCAACTAAA 7200
AAAGATCAAG AGGAACTGAT CCACTTGATC TCCAATTATT CTAAGATTTC TCTTTACCAA CATCATTTGA CAAAGAGCCA AAATTATATA CATCTCTTAG 7300
GACCTCCTTT TATCAACCAA GTCTGGCATC GCTGGAAGCT CTACCCTAAA CGTCGTATAG TTATCATTGC TTTCCGCGTA AATCTGCCCT CCATGCTGAA 7400
CAATAATTTC TTTTGCAATC GCCAATCCAA GTCCCGCGCC ACCCGTATCG GAAGAACGAG CATTGTCCAG CCTATAGAAC TTTTCAAATA TGGCAGCTAG 7500
CTTATCTTTT GGGATGCTTC CAGTGTTCTT GAATTCGATT GACACCACAT CCCCGGAGAG GCCCGCGGTA ATGTCAATGA TGCTGTTATC CTCACTGTAT 7600
GCAGCGGCGT TTTTCAAAAT GTTGTTAAAG ACTCTCGCGA GTTTATCAGG GTCGCCGGAC ACGGTCAGAT CCTCGGGGGC GTGAATAACC GCCTGTTTTC 7700
CATGTGCGGA AAGCTGAGGA TAAAATTCAT CGGTCATCTG CACCAGCATA TAGTATAGGT CTATGTGCGT TTTTGTTAGC GTTATCGTTT GTAGGTTATA 7800
CCGTGTAATC TCAAAAAACT CGTCGATTAG CTGTTCGAGT CGATACGCTT TGTCCAACGT GATATGCACA TACTTTGCCT TTTGATCTAC CGGCATGTCT 7900
GGAGCCTCGT CAAGCAGGCT CAAATAACCG ATAATGGATG TAAGGGGCGT TTTAATATCG TGCGCCAAGT ACATAACAAC GTCATTTTTT CTTTGTTCGG 8000
CCAGCTTTGC ATCCTGCTCT CGCTTTTCCA GAGTCCGTTT TAATGTGTTG AGCTTTTGTT CCATAACATC CATTTCCGCA GAAAGCTCAA TTTGTTTATC 8100
TTCGTTCTGA ATAAGTACAT CAATGCCGGT ATTTATCTCG TCAAAGTATT TTGCGAATTT TGAAAGCATG ACGCGACATA GAATAAGAAT ACTAATGACA 8200
ATCGCCACAT AAATAAAGAT ATCTATATTG TTCCGTATGG AATATTGATA TAATTTCATC GCGTCCAGGT GATTTAAGTC ATATTTGTTT TCCAAAATAC 8300
TTAAGATCCA ATCCCCAAGT TTCCCTCGGA TCATTGAACG AATATACAAC ACGAATACAA TTGCTACCAC AACAATTGCA ACGATATACA TGTAAAGTTT 8400
TCGTTCTAGT TTGGAATAGT CGTTTTTTTT ATTTTTCAAT TTTATAACCA ACCCCCCATA CCGTTTTTAT ATATTTCGGA TTATCAATGG TGTCGTTCAT 8500
TTTTTCGCGC AAATGCCGGA TATGCACGGT GATGGTGTTG TTGCTCTTGC TGAAATATTC GTCGCCCCAT ATCTCATGAA ATAGCAGCTC GGAGCTAACC 8600
ACATTCCCCT TGTTTTCACA GAGGATTCGC AGTATTGAAA ACTCGGTGGG AGTAAGGGAT AACTGCTTCT CGTTCAGATA ACACTCATGG GTGTTAACAT 8700
TAATGACAAG GCCGGAGTGG ACGATAACAT TTTCGTTCTG CTCCTTTACT CCACTGAATT TTTTGTATCG GCGCAACTGG GCCTTTACCC GAGCAATTAA 8800
CTCCAGTGGG CGAAAGGGCT TCGTTATATA ATCATCCGCG CCGATTGTTA ACCCTGTAAT TTTATCTACC TCTGTATCTT TCCCGGTCAG CATGATAATC 8900
GGATAGGTGT GCTTGTCCCT TATTTTTTGA CAGATAGTAA GGCCGCTTGT GCCGGGAAGC ATGATGTCCA ATATGGCAAG GTCAATCTCA GACTTGTCTA 9000
TACATTCCAA TGCTTCTTTG GCGGTATAGT ATTTGAAAAC CGTATAATTC TCGTTTTTTA AGTATAATTC AACCAAATCG GCAATTTCAT GTTCATCATC 9100
CACAATAAGT ATTTTATCGC TCATAGTTAT CACCCTTTCA CATAAGTTTG CCCTTAATAA TTTATCAGAT TATAGGGCCG AATTTATAAG CATTTACATA 9200
ATAAATGACT AAGAATTTCT TAAGATGATG ATTCTTTTTT TATCAAAGGG CTTTTCGGCA TCGCTAGGAG GCTGTTAATA TTTTATAGTT TCCTTTTCTT 9300
CTTTAAAAAT ATTGCCCATT AGCGGAATAC AGAATGGCTA ATTATTCACT TCTGATAATT TCCTGTATAA TGAAGCCCTA GATACATTAG TAATTTCACA 9400
AATTTGATTT ACAGTCATAT TTCCTTCTTT ATATAGCTTT ACCGCATAAT TCATTCCTGC GTGATTTTTA TGATACTTCT TTAATCGACC TTTAAACTTT 9500
CCTTCTTTCT TAGCCAATTC AATCCCTTCA CGTTGTCTCA TCCGAATAAG ATCTCGCTCT AATTGGTTAA CACCAGCCAT TACAGTAATT AAGAATTGGC 9600
TGTATGGATT ATCTTCTGAT AAATCAAGCC ATGTATCTTT TAGTGATTTT AAACTTGCCT TTTTATCTCG TATGTTATCG ATTAATTCAA ATAGATCTTG 9700
TGTACTACGA GTGATTCGAG TTAAGTCTGT AACATAAATG ATGTCATCTT CCTGTAAATC GTCTAACACT TTTTGAAGTT GCTCGCGATC CTTTGTTGCT 9800
CCTGAAACTT TCTCTTCATA TATAATATCC ATTCCGATCT CGTTCAACTG CTGAAATTGT CTTGAAGGAT TCTGGTTAGT CGAACTGACA CGAATATAAC 9900
CGATTTTCCG CAAAATATCA CCTCATTTTT GAGACAAGTC TTATGAGACG CTCTTAACTA TGATTTTATC AGTCTACTAC ATTTGTATCA ATAGAGTACA 10000
CTCTATTGAT ATATAATTGA ACTAATAAAT TGAAAATACA GAAATGGAAT GATACTGAAT GAAAATTGCG AGAGGTAGAG AATTGCTTAC ACCGGAACAG 10100
AGACAGGCTT TTATGCAAAT CCCTGAAGAT GAATGGATAC TGGGGACCTA CTTCACTTTT TCCAAACGGG ATTTAGAAAT AGTTAATAAG CGAAGGAGGG 10200
AAGAAAACCG TTTAGGATTT GCTGTTCAAT TAGCTGTTCT TCGGTATCCC GGTTGGCCAT ACACTCATAT CAAAAGCATC CCAGATTCGG TCATACAATA 10300
TATATCGAAA CAGATTGGTG TTAGTCCATC CTCGCTTGAT CATTATCCTC AAAGGGAAAA TACACTTTGG GATCATTTGA AAGAAATTCG AAGTGAATAC 10400
GACTTTGTAA CTTTTACCCT GAGTGAATAT CGAATGACAT TTAAGTACCT TCATCAATTA GCTTTGGAAA ATGGTGATGC CATTCATCTA CTGCATGAAT 10500
GCATAGATTT TCTAAGAAAA AACAAAATTA TACTGCCTGC TATCACTACA CTTGAAAGAA TGGTGTGGGA AGCAAGGGCA ATGGCTGAAA AGAAGCTATT 10600
TAATACGGTT AGTAAATCTC TAACAAATGA GCAAAAAGAA AAGCTTGAAG GGATTATTAC CTCGCAGCAT CCATCCGAAT CCAATAAAAC GATATTGGGT 10700
TGGTTAAAAG AGCCACCGGG TCATCCTTCA CCCGAAACTT TTCTAAAAAT AATAGAACGA CTCGAATACA TACGAGGAAT GGATTTAGAA ACAGTGCAAA 10800
TTAGTCATTT GCACCGTAAC CGCCTGTTGC AGCTGTCTCG CTTAGGCTCA AGATACGAGC CGTATGCATT CCGTGACTTT CAAGAAAATA AACGTTATTC 10900
GATATTAACC ATCTATTTAT TACAACTTAC TCAGGAGCTA ACGGATAAAG CGTTTGAAAT TCATGATAGG CAAATACTTA GTTTGTTATC AAAAGGTCGT 11000
AAGGCTCAAG AGGAAATCCA GAAACAAAAC GGTAAAAAGC TAAATGAGAA AGTTATACAC TTTACGAACA TCGGACAAGC ATTAATTAAA GCAAGAGAGG 11100
AAAAATTAGA CGTTTTTAAG GTTTTAGAAT CGGTTATTGA ATGGAATACC TTTGTCTCTT CAGTAGAAGA GGCTCAGGAA CTTGCACGTC CTGCCGACTA 11200
TGATTATTTA GACTTACTGC AAAAACGGTT TTATTCACTA AGAAAATATA CGCCAACGCT ATTAAGAGTA TTGGAATTTC ATTCTACAAA GGCAAATGAG 11300
CCACTTTTAC AAGCTGTTGA GATTATCCGA GGAATGAACG AATCTGGAAA GCGAAAAGTG CCTGATGACT CACCTGTGGA TTTTATTTCA AAACGATGGA 11400
AAAGACATTT ATACGAGGAT GATGGTACAA CAATTAATCG TCATTACTAT GAAATGGCTG TTTTAACAGA ACTTCGGGAG CATGTTCGGG CAGGAGATGT 11500
TTCCATTGTT GGCAGCAGAC AATATAGGGA TTTTGAGGAA TATTTGTTTT CGGAAGATAC ATGGAATCAA TCGAAGGGGA ATACGAGATT ATCAGTTAGT 11600
TTATCATTCG AAGATTATAT AACGGAGAGA ACCAGCAGCT TTAATGAAAG GTTAAAGTGG TTAGCTGCCA ATTCCAATAA GTTAGATGGG GTTTCTCTTG 11700
AAAAAGGAAA GCTATCACTT GCACGCTTAG AAAAAGATGT TCCAGAAGAA GCAAAAAAAT TTAGTGCAAG CCTTTATCAG ATGCTACCAA GAATAAAATT 11800
AACTGATTTA CTCATGGATG TGGCCCATAT AACAGGATTT CATGAGCAAT TCACTCATGC TTCCAATAAT CGAAAACCAG ATAAGGAAGA AACAATCATT 11900
ATCATGGCTG CCCTTTTAGG AATGGGAATG AATATTGGCT TGAGCAAGAT GGCCGAAGCC ACACCCGGAC TTACATATAA GCAACTAGCC AATGTATCTC 12000
AATGGCGCAT GTATGAAGAT GCCATGAATA AAGCCCAAGC CATATTAGTA AACTTTCATC ATAAATTACA ATTGCCTTTC TATTGGGGCG ACGGTACAAC 12100
ATCTTCGTCA GATGGTATGA GAATGCAGCT AGGTGTTTCA TCACTACATG CAGATGCAAA TCCACATTAT GGAACTGGAA AAGGAGCCAC CATCTACCGA 12200
TTTACAAGTG GGAAATAAAA AGCTGAAAGA AGAAAATTGC ATTTCAAACT ATATTTTCTA CAATAGCTCT AAAATGGCAT ATTTTGCGTT CTGAGCGGTT 12300
TTAGCGTTTA TTTCGTTTAG TTATCGGCAC AATCGGTGAA ACACGTTAGA GGAGCGAAAA TGGAGCCTGT AAGGCGACTG GTAGCGGAAC GGTCGTGTTA 12400
GATTGTGTAG CCGATAGCTG AACGAAATAA ATGCTGGCAG CGCCATTCTA TTTCGGCAGG AGGAGGCTCA AGGGGTTCGG GGAATGAAAT TCCCTGAGGT 12500
CTTTTTTATT TTTTCTAGAG GAGTGCTATA ATCAAAGAAA ATGAGAAAAA AGAGTAAAAA AATAGTCGAG CAGTGCTGAC GCACTCTCGA CCTTTACGGA 12600
AACTACTTCA CCTAGCTCCG TAACTCATGT TCATTATACG AATATTTTTA GGTTTCTTCA AGCTAGAGAT TTTTGGATAT GAATTTTTAG AGTTACGTGA 12700
ACTCTGGAAA TTCTTTCCAA GAATCTCTTT TTCTTTGAGG AGGAACAAAA TTTGAGTAAA AATGGCATAA TCGTAAATGA GTGGGAAAAT TTAACAGCCC 12800
TATCTAACAG GCGGTTAAAT GTACAAACTA TGTACACCCC CTTAAAAATG CAAT

 ORFs     
ORF Summary
Gene Name Associated TE Coordinates Class Sub Class Orientation
vanZA (ARO:3002962) Tn1546.1_p 259-744 Passenger Gene Antibiotic Resistance -
vanYA (ARO:3002955) Tn1546.1_p 897-1808 Passenger Gene Antibiotic Resistance -
tnp IS1216E 2203-2889 Transposase   +
vanXA (ARO:3002949) Tn1546.1_p 2969-3577 Passenger Gene Antibiotic Resistance -
vanA (ARO:3000010) Tn1546.1_p 3583-4614 Passenger Gene Antibiotic Resistance -
vanHA (ARO:3002942) Tn1546.1_p 4607-5575 Passenger Gene Antibiotic Resistance -
tnp IS1251 5907-7199 Transposase   +
vanSA (ARO:3002931) Tn1546.1_p 7297-8391 Passenger Gene Antibiotic Resistance -
vanRA (ARO:3002919) Tn1546.1_p 8429-9124 Passenger Gene Antibiotic Resistance -
tnpR Tn1546.1_p 9338-9916 Accessory Gene Resolvase -
tnpA Tn1546.1_p 10059-12218 Transposase   +

ORF Details
Gene Name Protein Name Associated TE Gene Length Coordinates Strand
vanZA (ARO:3002962) VanZA Tn1546.1_p 486 259-744 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target alteration (ARO:0001001)
Target:   glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028)
Sequence Family:  vanZ (ARO:3000116)||glycopeptide resistance gene cluster (ARO:3000234)
Comment:   perfect match to reference sequence for ARO:3002962||Synonym: vanZ
Protein Sequence:  
MGKILSRGLL ALYLVTLIWL VLFKLQYNIL SVFNYHQRSL NLTPFTATGN FREMIDNVII FIPFGLLLNV NFKEIGFLPK FAFVLVLSLT FEIIQFIFAI
GATDITDVIT NTVGGFLGLK LYGLSNKHMN QKKLDRVIIF VGILLLVLLL VYRTHLRINY V

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
vanYA (ARO:3002955) VanYA Tn1546.1_p 912 897-1808 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target alteration (ARO:0001001)
Transpoase Chemistry:   D-Ala-D-Ala carboxypeptidase
Target:   glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028)
Sequence Family:  vanY (ARO:3000077)||glycopeptide resistance gene cluster (ARO:3000234)
Comment:   perfect match to reference sequence for ARO:3002955||D-Ala-D-Ala carboxypeptidase||Synonym: vanY
Protein Sequence:  
MKKLFFLLLL LFLIYLGYDY VNEALFSQEK VEFQNYDQNP KEHLENSGTS ENTQEKTITE EQVYQGNLLL INSKYPVRQE SVKSDIVNLS KHDELINGYG
LLDSNIYMSK EIAQKFSEMV NDAVKGGVSH FIINSGYRDF DEQSVLYQEM GAEYALPAGY SEHNSGLSLD VGSSLTKMER APEGKWIEEN AWKYGFILRY
PEDKTELTGI QYEPWHIRYV GLPHSAIMKE KNFVLEEYMD YLKEEKTISV SVNGEKYEIF YYPVTKNTTI HVPTNLRYEI SGNNIDGVIV TVFPGSTHTN
SRR

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnp Tnp IS1216E 687 2203-2889 +
Class:   Transposase
Transpoase Chemistry:   DDE
Protein Sequence:  
MTMNHFKGKQ FQQDVIIVAV GYYLRYNLSY REVQEILYDR GINVSHTTIY RWVQEYGKLL YQIWKKKNKK SFYSWKMDET YIKIKGKWHY LYRAIDADGL
TLDIWLRKKR DTQAAYAFLK RLVKQFDEPK VVVTDKAPSI TSAFKKLKEY GFYQGTEHRT IKYLNNLIEQ DHRPVKRRNK FYRSLRTAST TIKGMEAIRG
LYKKTRKEGT LFGFSVCTEI KVLLGIPA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
vanXA (ARO:3002949) VanXA Tn1546.1_p 609 2969-3577 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target alteration (ARO:0001001)
Transpoase Chemistry:   D-Ala-D-Ala dipeptidase
Target:   glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028)
Sequence Family:  vanX (ARO:3000011)||glycopeptide resistance gene cluster (ARO:3000234)
Comment:   perfect match to reference sequence for ARO:3002949||Synonym: vanX
Protein Sequence:  
MEIGFTFLDE IVHGVRWDAK YATWDNFTGK PVDGYEVNRI VGTYELAESL LKAKELAATQ GYGLLLWDGY RPNRAVNCFM QWAAQPENNL TKESYYPNID
RTEMISKGYV ASKSSHSRGS AIDLTLYRLD TGELVPMGSR FDFMDERSHH AANGISCNEA QNRRRLRSIM ENSGFEAYSL EWWHYVLRDE PYPNSYFDFP
VK

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
vanA (ARO:3000010) VanA Tn1546.1_p 1032 3583-4614 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target alteration (ARO:0001001)
Transpoase Chemistry:   D-alanine--(R)-lactate ligase
Target:   glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028)
Sequence Family:  glycopeptide resistance gene cluster (ARO:3000234)||van ligase (ARO:3002906)
Comment:   strict match to reference sequence for ARO:3000010 (bitscore: 705)
Protein Sequence:  
MNRIKVAILF GGCSEEHDVS VKSAIEIAAN INKEKYEPLY IGITKSGVWK MCEKPCAEWE NDNCYSAVLS PDKKMHGLLV KKNHEYEINH VDVAFSALHG
KSGEDGSIQG LFELSGIPFV GCDIQSSAIC MDKSLTYIVA KNAGIATPAF WVINKDDRPV AATFTYPVFV KPARSGSSFG VKKVNSADEL DYAIESARQY
DSKILIEQAV SGCEVGCAVL GNSAALAVGE VDQIRLQYGI FRIHQEVEPE KGSENAVITV PADLSAEERG RIQETAKKIY KALGCRGLAR VDMFLQDNGR
IVLNEVNTLP GFTSYSRYPR MMAAAGIALP ELIDRLIVLA LKG

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
vanHA (ARO:3002942) VanHA Tn1546.1_p 969 4607-5575 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target alteration (ARO:0001001)
Transpoase Chemistry:   D-lactate dehydrogenase VanH-A
Target:   glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028)
Sequence Family:  glycopeptide resistance gene cluster (ARO:3000234)||vanH (ARO:3000006)
Comment:   perfect match to reference sequence for ARO:3002942||Synonym: vanH
Protein Sequence:  
MNNIGITVYG CEQDEADAFH ALSPRFGVMA TIINANVSES NAKSAPFNQC ISVGHKSEIS ASILLALKRA GVKYISTRSI GCNHIDTTAA KRMGITVDNV
AYSPDSVADY TMMLILMAVR NVKSIVRSVE KHDFRLDSDR GKVLSDMTVG VVGTGQIGKA VIERLRGFGC KVLAYSRSRS IEVNYVPFDE LLQNSDIVTL
HVPLNTDTHY IISHEQIQRM KQGAFLINTG RGPLVDTYEL VKALENGKLG GAALDVLEGE EEFFYSDCTQ KPIDNQFLLK LQRMPNVIIT PHTAYYTEQA
LRDTVEKTIK NCLDFERRQE HE

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnp Tnp IS1251 1293 5907-7199 +
Class:   Transposase
Transpoase Chemistry:   DDE
Protein Sequence:  
MSYTHLIKET LDILDLSVTF NENCLTKEKY KGQICHIYRG NLIYTAQECI HCKHQIASDI VRWGTTTVRL LMNDVSEYRT YLELKKQRFK CKACQRTFVA
DTSVAKKHCF ISEKVRWSVI ARLKKNTSMT EIARQKNIST SSVYRVMKRF YRPLNPFKQT LPKVLCFDEF KSVRSVASAM SFIMMDGQSH ALLDIVENRR
LPYLERYFSR FSLATREAVQ LIVIDMYAPY VSLVKKLFPK AQLIIDRFHI VQHIGRTFRN HRIKETNQLL KSKEQKHYQL GKQLKRYWKL LQKDERKLDY
TRRLWRPGFK AHLTETDIVD RLLKGSPALR VGYQLYQDFL YAVKERDYVS FEELLTNNIM LPEGYQTTLR TFQKFLPQIK NALQQSYSNG PLECLNNHIK
VLKRNAYGFR SFYNFKLRIM IRHGNALIFN

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
vanSA (ARO:3002931) VanSA Tn1546.1_p 1095 7297-8391 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target alteration (ARO:0001001)
Transpoase Chemistry:   VanA-type vancomycin resistance histidine kinase sensor
Target:   glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028)
Sequence Family:  glycopeptide resistance gene cluster (ARO:3000234)||vanS (ARO:3000071)
Comment:   strict match to reference sequence for ARO:3002931 (bitscore: 743)||Missing first 20 amino acids relative to vanSA (ARO:3002931)||Synonym: vanS
Protein Sequence:  
MYIVAIVVVA IVFVLYIRSM IRGKLGDWIL SILENKYDLN HLDAMKLYQY SIRNNIDIFI YVAIVISILI LCRVMLSKFA KYFDEINTGI DVLIQNEDKQ
IELSAEMDVM EQKLNTLKRT LEKREQDAKL AEQRKNDVVM YLAHDIKTPL TSIIGYLSLL DEAPDMPVDQ KAKYVHITLD KAYRLEQLID EFFEITRYNL
QTITLTKTHI DLYYMLVQMT DEFYPQLSAH GKQAVIHAPE DLTVSGDPDK LARVFNNILK NAAAYSEDNS IIDITAGLSG DVVSIEFKNT GSIPKDKLAA
IFEKFYRLDN ARSSDTGGAG LGLAIAKEII VQHGGQIYAE SNDNYTTFRV ELPAMPDLVD KRRS

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
vanRA (ARO:3002919) VanRA Tn1546.1_p 696 8429-9124 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target alteration (ARO:0001001)
Transpoase Chemistry:   VanA-type vancomycin resistance DNA-binding response regulator
Target:   glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028)
Sequence Family:  glycopeptide resistance gene cluster (ARO:3000234)||vanR (ARO:3000574)
Comment:   perfect match to reference sequence for ARO:3002919||Synonym: vanR
Protein Sequence:  
MSDKILIVDD EHEIADLVEL YLKNENYTVF KYYTAKEALE CIDKSEIDLA ILDIMLPGTS GLTICQKIRD KHTYPIIMLT GKDTEVDKIT GLTIGADDYI
TKPFRPLELI ARVKAQLRRY KKFSGVKEQN ENVIVHSGLV INVNTHECYL NEKQLSLTPT EFSILRILCE NKGNVVSSEL LFHEIWGDEY FSKSNNTITV
HIRHLREKMN DTIDNPKYIK TVWGVGYKIE K

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnpR TnpR Tn1546.1_p 579 9338-9916 -
Class:   Accessory Gene
Sub Class:   Resolvase
Function:   resolvase; serine site-specific recombinase
Transpoase Chemistry:   Serine
Sequence Family:  Serine Site-Specific Recombinase
Protein Sequence:  
MLRKIGYIRV SSTNQNPSRQ FQQLNEIGMD IIYEEKVSGA TKDREQLQKV LDDLQEDDII YVTDLTRITR STQDLFELID NIRDKKASLK SLKDTWLDLS
EDNPYSQFLI TVMAGVNQLE RDLIRMRQRE GIELAKKEGK FKGRLKKYHK NHAGMNYAVK LYKEGNMTVN QICEITNVSR ASLYRKLSEV NN

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnpA TnpA Tn1546.1_p 2160 10059-12218 +
Class:   Transposase
Transpoase Chemistry:   DDE
Protein Sequence:  
MKIARGRELL TPEQRQAFMQ IPEDEWILGT YFTFSKRDLE IVNKRRREEN RLGFAVQLAV LRYPGWPYTH IKSIPDSVIQ YISKQIGVSP SSLDHYPQRE
NTLWDHLKEI RSEYDFVTFT LSEYRMTFKY LHQLALENGD AIHLLHECID FLRKNKIILP AITTLERMVW EARAMAEKKL FNTVSKSLTN EQKEKLEGII
TSQHPSESNK TILGWLKEPP GHPSPETFLK IIERLEYIRG MDLETVQISH LHRNRLLQLS RLGSRYEPYA FRDFQENKRY SILTIYLLQL TQELTDKAFE
IHDRQILSLL SKGRKAQEEI QKQNGKKLNE KVIHFTNIGQ ALIKAREEKL DVFKVLESVI EWNTFVSSVE EAQELARPAD YDYLDLLQKR FYSLRKYTPT
LLRVLEFHST KANEPLLQAV EIIRGMNESG KRKVPDDSPV DFISKRWKRH LYEDDGTTIN RHYYEMAVLT ELREHVRAGD VSIVGSRQYR DFEEYLFSED
TWNQSKGNTR LSVSLSFEDY ITERTSSFNE RLKWLAANSN KLDGVSLEKG KLSLARLEKD VPEEAKKFSA SLYQMLPRIK LTDLLMDVAH ITGFHEQFTH
ASNNRKPDKE ETIIIMAALL GMGMNIGLSK MAEATPGLTY KQLANVSQWR MYEDAMNKAQ AILVNFHHKL QLPFYWGDGT TSSSDGMRMQ LGVSSLHADA
NPHYGTGKGA TIYRFTSGK

 Internal Transposable Elements (TE)     

TnCentral Accession TE Name Type Coordinates Length
IS1216E-U49512 IS1216E Insertion Sequence 2135-2943 809
IS1251-KR349520.1 IS1251 Insertion Sequence 5781-7279 1499

 Internal Repeat Elements     

Name Associated Mobile Element Coordinates Sequence (Top Strand)
IRL IS1216E 2135-2158 GGTTCTGTTG CAAAGTTTTA AATC
IRR IS1216E 2921-2943 TAAATTTTGA AACGTTGTCT TGG
IRL IS1251 5781-5804 GGCTCTATAC TTTTTGATGT TGGT