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Internal Transposable Elements | |
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References | |
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| Name: In_TnAs3 (Synonyms: In_Tn7145) |
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| Family: Tn402 Group: Class 1 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Aeromonas salmonicida subsp. salmonicida A449 | Molecular Source: | plasmid 4 |
| Place of Origin: | Canada | Date of Isolation: | 2007 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAGTT GATTGGGCGT AATGGCTGTT GTGCAGCCAG CTCCTGACAG TTCAATATCA GAAGTGATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGAG CATGGCGACG GACACCCCAC GGATTCCAGA ACAAGGCGTG GCCACTCTGC CTGATGAGGC 200
TTGGGAGCGT GCGCGCCGTC GTGCGGAGAT CATCAGTCCG TTGGCGCAGT CGGAGACGGT CGGGCACGAA GCGGCCGATA TGGCGGCTCA GGCGCTGGGC 300
TTGTCTCGGC GCCAGGTATA CGTTCTGATC CGGCGTGCCC GGCAAGGCAG CGGCCTCGTG ACGGATCTGG TGCCCGGCCA GTCCGGTGGA GGTAAAGGTA 400
AGGGGCGCTT GCCGGAACCG GTCGAGCGCG TCATCCACGA GCTACTGCAA AAGCGGTTCC TGACCAAGCA GAAGCGCAGC CTAGCGGCCT TTCACCGCGA 500
AGTCACTCAG GTGTGCAAGG CTCAAAAACT GCGAGTGCCG GCGCGCAATA CCGTGGCCTT ACGGATCGCT AGCCTTGACC CGCGCAAGGT CATCCGCCGG 600
CGGGAAGGCC AGGATGCCGC TCGTGACCTA CAAGGTGTGG GCGGCGAGCC TCCTGCCGTG ACCGCGCCGC TGGAGCAGGT GCAGATAGAC CATACGGTCA 700
TCGACCTGAT CGTGGTCGAT GACCGCGACC GGCAACCTAT TGGCCGCCCG TACCTGACCC TCGCCATCGA CGTGTTCACC CGCTGCGTGC TCGGCATGGT 800
CGTCACGCTG GAAGCGCCGT CTGCCGTTTC GGTTGGCCTG TGCCTCGTGC ATGTCGCCTG CGACAAGCGC CCTTGGCTGG AAGGACTGAA CGTGGAAATG 900
GATTGGCAGA TGAGCGGCAA GCCCTTGCTG CTCTACCTAG ACAACGCGGC CGAGTTCAAG AGCGAGGCCC TGCGCCGGGG TTGCGAGCAG CATGGCATCC 1000
GGCTGGACTA TCGCCCGCTG GGACAGCCGC ACTATGGCGG CATCGTGGAA CGGATCATCG GCACGGCGAT GCAGATGATT CACGACGAAC TGCCGGGAAC 1100
GACCTTCTCC AACCCTGACC AGCGCGGCGA CTACGATTCC GAAAACAAGG CCGCCCTGAC GCTGCGCGAG CTAGAGCGCT GGCTCACATT GGCGGTCGGC 1200
ACCTACCACG GTTCGGTGCA CAACGGCCTG CTCCAACCGC CGGCCGCGCG CTGGGCCGAG GCCGTGGCGC GTGTCGGCGT ACCGGCCGTC GTCACACGCG 1300
CTACTTCGTT CCTGGTCGAT TTTCTGCCGA TCCTCCGGCG CACGCTGACC CGCACCGGCT TTGTCATCGA CCACATCCAC TACTACGCCG ATGCGCTCAA 1400
GCCGTGGATT GCGCGGCGTG AACGCTGGCC GTCCTTTCTG ATCCGGCGCG ATCCGCGCGA CATCAGCCGT ATCTGGGTCC TGGAACCGGA GGGACAGCAT 1500
TACCTGGAAA TTCCCTACCG TACCTTGTCG CATCCGGCTG TCACCCTCTG GGAACAACGG CAGGCGCTGG CGAAACTGCG GCAGCAAGGG CGCGAACAGG 1600
TGGATGAGTC GGCGCTGTTC CGCATGATCG GCCAGATGCG TGAGATTGTG ACCAGCGCGC AGAAGGCCAC ACGCAAGGCG CGGCGTGACG CGGATCGCCG 1700
CCAGCACCTC AAGACATCAG CTCGGCCGGA CAAGCCCGTT CCGCCGGATA CGGATATTGC CGACCCGCAG GCAGACAACT TGCCACCCGC CAAACCGTTC 1800
GACCAGATTG AGGAGTGGTA GCCGTGGACG AATATCCCAT CATCGACCTG TCCCACCTGC TGCCGGCGGC CCAGGGCTTG GCCCGTCTTC CGGCGGACGA 1900
GCGCATCCAG CGCCTTCGCG CCGACCGCTG GATCGGCTAT CCGCGCGCAG TCGAGGCGCT GAACCGGCTG GAAGCCCTTT ATGCGTGGCC AAACAAGCAA 2000
CGCATGCCCA ACCTGCTGCT GGTTGGCCCG ACCAACAATG GCAAGTCGAT GATCGTCGAG AAGTTCCGCC GCACCCACCC GGCCAGCTCC GACGCCGACC 2100
AGGAGCACAT CCCGGTGTTG GTCGTGCAGA TGCCGTCCGA GCCGTCCGTG ATCCGCTTCT ACGTCGCGCT GCTCGCCGCG ATGGGCGCGC CGCTGCGCCC 2200
ACGCCCACGG TTGCCGGAAA TGGAGCAACT GGCTCTGGCA CTGCTGCGCA AGGTCGGCGT GCGCATGCTG GTGATCGACG AGCTGCACAA CGTGCTGGCC 2300
GGCAACAGCG TCAACCGCCG GGAATTCCTC AACCTGCTGC GCTTCCTCGG CAACGAACTG CGCATCCCGT TGGTTGGGGT AGGCACGCGC GACGCCTACC 2400
TAGCCATCCG CTCCGATGAC CAGTTGGAAA ATCGCTTCGA GCCGATGATG CTGCCGGTAT GGGAGGCCAA CGACGATTGC TGCTCACTGC TGGCCAGCTT 2500
CGCCGCTTCG CTCCCGCTGC GCCGGCCTTC CCCAATTGCC ACGCTGGACA TGGCTCGCTA CCTGCTCACA CGCAGCGAGG GCACCATAGG GGAACTGGCG 2600
CACTTGCTGA TGGCGGCGGC CATCGTCGCC GTGGAGAGCG GCGAGGAAGC GATCAACCAT CGCACACTCA GCATATCGAC AACCTCTCGC GCAACCAAGA 2700
CATCGCGGTC GGACTGCAAG TGATCTTGAA GCCACGGGCC CGTCCCACCC CGACATGGAC CTCGATGCCC GAACGGACGT TAGATTTCGA GTTCTAGGCG 2800
TTCTGCGATG AAGGTTGGAT CCCAGCCGGG ATTGAAAGTG TCGACGTGGG TGAATCCGAG CCGCTCGTAT AGGCCACGCA GGTTCGGGTG GCAGTCGAGC 2900
CGCAGCTTGG CGCACCCCTG CGTTCGCGCG GCATGGCGGC AAGCCTCGAT CAGCGCGGAG CTGACACCCC GGCCCGCATG TGTCCGTCGC ACCGCGAGCT 3000
TGTGCAGATA TGCGGCCTCC CCCTTGAGGG CGTCGGGCCA GAACTCGGGA TCCTCGGCCG ACAAGGTGCA ACAGCCGACG ATGCCGTCGC TGCAACTCGC 3100
GACTAGGAGC TCGGATCTCA GGACGAAGGT CTCCGCGAAT GTCCGGTCGA TCCGCGCGAC GTCCCAGGCG GGCGTTCCCT TGGCGGACAT CCACGCCGCA 3200
GCGTCGTGCA TCAGCCGCAC AACCTCGTCG ATATCACCCG AGCAGGCGAC CCGAACGTTC GGAGGCTCCT CGCTGTCCAT TCGCTCCCCT GGCGCGGTAT 3300
GAACCGCCGC CTCATAGTGC AGTTTGATCC TGACGAGCCC AGCATGTCTG CGCCCACCTT CGCGGAACCT GACCAGGGTC CGCTAGCGGG CGGCCGGAAG 3400
GTGAATGCTA GGCATGATCT AACCCTCGGT CTCTGGCGTC GCGACTGCGA AATTTCGCGA GGGTTTCCGA GAAGGTGATT GCGCTTCGCA GATCTCCAGG 3500
CGCGTGGGTG CGGACGTAGT CAGCGCCATT GCCGATCGCG TGAAGTTCCG CCGCAAGGCT CGCTGGACCC AGATCCTTTA CAGGAAGGCC AACGGTGGCG 3600
CCCAAGAAGG ATTTCCGCGA CACCGAGACC AATAGCGGAA GCCCCAACGC CGACTTCAGC TTTTGAAGGT TCGACAGCAC GTGCAGCGAT GTTTCCGGTG 3700
CGGGGCTCAA GAAAAATCCC ATCCCCGGAT CGAGGATGAG CCGGTCGGCA GCGACCCCGC TCCGTCGCAA GGCGGAAACC CGCGCCTCGA AGAACCGCAC 3800
AATCTCGTCG AGCGCGTCTT CGGGTCGAAG GTGACCGGTG CGGGTGGCGA TGCCATCCCG CTGCGCTGAG TGCATAACCA CCAGCCTGCA GTCCGCCTCA 3900
GCAATATCGG GATAGAGCGC AGGGTCAGGA AATCCTTGGA TATCGTTCAG GTAGCCCACG CCGCGCTTGA GCGCATAGCG CTGGGTTTCC GGTTGGAAGC 4000
TGTCGATTGA AACACGGTGC ATCTGATCGG ACAGGGCGTC TAAGAGCGGC GCAATACGTC TGATCTCATC GGCCGGCGAT ACAGGCCTCG CGTCCGGATG 4100
GCTGGCGGCC GGTCCGACAT CCACGACGTC TGATCCGACT CGCAGCATTT CGATCGCCGC GGTGACAGCG CCGGCGGGGT CTAGCCGCCG GCTCTCATCG 4200
AAGAAGGAGT CCTCGGTGAG ATTCAGAATG CCGAACACCG TCACCATGGC GTCGGCCTCC GCAGCGACTT CCACGATGGG GATCGGGCGA GCAAAAAGGC 4300
AGCAATTATG AGCCCCATAC CTACAAAGCC CCACGCATCA AGCTTTTGCC CATGAAGCAA CCAGGCAATG GCTGTAATTA TGACGACGCC GAGTCCCGAC 4400
CAGACTGCAT AAGCAACACC GACAGGGATG GATTTCAGAA CCAGAGAAAG AAAATAAAAT GCGATGCCAT AACCGATTAT GACAACGGCG GAAGGGGCAA 4500
GCTTAGTAAA GCCCTCGCTA GATTTTAATG CGGATGTTGC GATTACTTCG CCAACTATTG CGATAACAAG AAAAAGCCAG CCTTTCATGA TATATCTCCC 4600
AATTTGTGTA GGGCTTATTA TGCACGCTTA AAAATAATAA AAGCAGACTT GACCTGATAG TTTGGCTGTG AGCAATTATG TGCTTAGTGC ATCTAACGCT 4700
TGAGTTAAGC CGCGCCGCGA AGCGGCGTCG GCTTGAACGA ATTGTTAGAC ATTATTTGCC GACTACCTTG GTGATCTCGC CTTTCACGTA GTGAACAAAT 4800
TCTTCCAACT GATCTGCGCG CGAGGCCAAG CGATCTTCTT CTTGTCCAAG ATAAGCCTGT CTAGCTTCAA GTATGACGGG CTGATACTGG GCCGGCAGGC 4900
GCTCCATTGC CCAGTCGGCA GCGACATCCT TCGGCGCGAT TCTGCCGGTT ACTGCGCTGT ACCAAATGCG GGACAACGTA AGCACTACAT TTCGCTCATC 5000
GCCAGCCCAG TCGGGCGGCG AGTTCCATAG CGTTAAGGTT TCATTTAGCG CCTCAAATAG ATCCTGTTCA GGAACCGGAT CAAAGAGTTC CTCCGCCGCT 5100
GGACCTACCA AGGCAACGCT ATGTTCTCTT GCTTTTGTCA GCAAGATAGC CAGATCAATG TCGATCGTGG CTGGCTCGAA GATACCTGCA AGAATGTCAT 5200
TGCGCTGCCA TTCTCCAAAT TGCAGTTCGC GCTTAGCTGG ATAACGCCAC GGAATGATGT CGTCGTGCAC AACAATGGTG ACTTCTACAG CGCGGAGAAT 5300
CTCGCTCTCT CCAGGGGAAG CCGAAGTTTC CAAAAGGTCG TTGATCAAAG CTCGCCGCGT TGTTTCATCA AGCCTTACGG TCACCGTAAC CAGCAAATCA 5400
ATATCACTGT GTGGCTTCAG GCCGCCATCC ACTGCGGAGC CGTACAAATG TACGGCCAGC AACGTCGGTT CGAGATGGCG CTCGATGACG CCAACTACCT 5500
CTGATAGTTG AGTCGATACT TCGGCGATCA CCGCTTCCCT CATGATGTTT AACTTTGTTT TAGGGCGACT GCCCTGCTGC GTAACATCGT TGCTGCTCCA 5600
TAACATCAAA CATCGACCCA CGGCGTAACG CGCTTGCTGC TTGGATGCCC GAGGCATAGA CTGTACAAAA AAACAGTCAT AACAAGCCAT GAAAACCGCC 5700
ACTGCGCCGT TACCACCGCT GCGTTCGGTC AAGGTTCTGG ACCAGTTGCG TGAGCGCATA CGCTACTTGC ATTACAGCTT ACGAACCGAA CAGGCTTATG 5800
TCCACTGGGT TCGTGCCTTC ATCCGTTTCC ACGGTGTGCG TCACCCGGCA ACCTTGGGCA GCAGCGAAGT CGAGGCATTT CTGTCCTGGC TGGCGAACGA 5900
GCGCAAGGTT TCGGTCTCCA CGCATCGTCA GGCATTGGCG GCCTTGCTGT TCTTCTACGG CAAGGTGCTG TGCACGGATC TGCCCTGGCT TCAGGAGATC 6000
GGAAGACCTC GGCCGTCGCG GCGCTTGCCG GTGGTGCTGA CCCCGGATGA AGTGGTTCGC ATCCTCGGTT TTCTGGAAGG CGAGCATCGT TTGTTCGCCC 6100
AGCTTCTGTA TGGAACGGGC ATGCGGATCA GTGAGGGTTT GCAACTGCGG GTCAAGGATC TGGATTTCGA TCACGGCACG ATCATCGTGC GGGAGGGCAA 6200
GGGCAGGCGC ATTGGCCGGA CTTTCTCGCG CGCCGTGAGG TAGAAGACCG CCCGCTGTCC GAGTATGTGC GCGAGGAGTT CGAGACCTAC CTGCGCTGCG 6300
GCGTGCTCGA GCACGGCTTC CTGCGCGTGG TCTGCGAGCA CTGTCGTGCC GAGAGGCTGG TGGCGTATTC CTGCAAGAAG CGCGGGCTGT GCCCGAGCTG 6400
CGGCGCACGG CGCATGGCCG AGTCGGCGCG GCATCTGGTG GACGAGGTGT TCGGCCCGCG GCCGGTGCGG CAATGGGTGC TGAGTTTCCC CTACCCGTTG 6500
CGCTTCCTGT TCGCCAGCAA GCCGGAGGCG ATCGGCCCGG TGCTGGGCAT CGTGCATCGT GTGATCGCCG GTTGGCTTGC CGATCAGGCC GGCGTGCCGC 6600
GGGATACGGC GCAATGCGGT GCGGTGACCC TGATCCAGCG CTTCGGCAGC GCGCTGAACC TGAATGTTCA CTTCCACATG CTGTGGCTCG ACGGCGTGTA 6700
CGACGCGAAC GTCGAGCCCC CGCGGCGCAA GCCGCGCCTG CGCCGCGCCC GTGCCCCCAC CTCTGCGCAA CTGACGCAGC TCGCCAACAC CATCGCGCAT 6800
CGCGTGTGCC GGCACCTGTC GCGCCGCGGC TGGCTCGAAG GCGAAGACGA ATCCGTGTTC CTGTCCGACA GCGCGGGTAG CGACGACGGC ATGGATGGGC 6900
TGCGGATGAG TTCGATGACC TACCGCATCG CCACCGGTCG CGACGCTGGC CGCAAGGTCG TCACGCTGCA AACATTGCCC GGTGACGCAG GCTCGCTGGA 7000
GGGCGATGCC GGCAAGGTCG GCGGCTTCTC GCTGCATGCC GGCGTGGCCG CGGAAGCACA CGAAAGCCAC AAGCTCGAAA AGCTGTGCCG CTACATCACG 7100
CGCCCGGCGA TCAGCGAGCA GCGGCTGTCG ATCTCACCGC AGGGTAGGGT GCGGTATCAG CTCAAGACGC CGTGGCGAAA TGGGACCACG CATGTCGAAT 7200
GGGATGCGGT GGACTTCATC GCCAAGCTGG CGGCACTGGT CCCGCCACCT CGCGCGCATC TCACCCGCTT CCACGGCGTA TTCGCCCCGA ATGCAAACCT 7300
GCGTGCGCAG CTGACGCCCT CGGGGCGCGG CAAGCGGCCT GCGGGCGATG CGGCGCCAGT GGACGTCAGC GCCCACGACG AGCCGCGCAG CCCCGAGCAG 7400
AAGCGCCGTG CGATGAGCTG GGCGCAACGG CTCAAGCGGG TCTTTTCCAT CGACATCACC ATCTGCGCCC ACTGCGGCGG CGCGGTACGG ATCGTCGCCA 7500
GCATCGAGGA ACCCACCGCC ATCCGCGCCA TCCTGGCCCA CTTCGAGAAG CACGGTGCGC GGGAAGAAGC GCACTACCGG CCCGCGGCGC GCGCGCCGCC 7600
TGGGGAAGCC GCGTGACCTC CCGCCGGTCA CGATGCCGAG GGCGAAAACT GGAAAACGCC ACGATGCGGC CACGACCCCG CAGGGCTGCC CTCGGCCTGC 7700
TGCCGGGAAT TGGTGGGAAA TACCCCCGGA CTGCGCCACT GCGCCGCCCC GCGAAGCCGA AACCCCGCGC GCGGACCACC GACCCGAGCC CCAACCGGCG 7800
CTTGCGCGGC CGCAACCTAC CCGCCAGACT TCCCGAAAAG GGCGTTTGAA ATTCCTATAC CCCCTTTGTG TTGTTCGATA AACTGGGATT TTATTTATTC 7900
AGCAAGTCTT GTAATTCATC CAAAAAACGG CAAACATGAA AGCCATCACA AACGGCATGA TGCACTTGAA TCGATAAGGG AATATAGTAT TTTCCGCCAT 8000
CCTCATAATA CTTCCCAAAC GTAAATATCG GCAGTAGATA GTCATATCCT TTTTTTAGAT TTAAGTTAAA GCCTTCAAAG CTTGTCCACG GTATCATAGA 8100
AACAGGGAAA GTGTTTTCCG GAGGATTAGG CTTTGCGAAC ATTCCCTTTC GTTCACCATA AGCGTCTATA TCCTTTTGAT AGTTCTGAAG AAACTCAGTA 8200
TAGTCTGCTG TAAACTCAGT CCAAATACTC GAAAAGGTTT CAGTTTCCTT ATGAAAGATT GTGTAGCAAG GCAGCATTTC TGAAAAAACA CCTACCTGTC 8300
CGTTTTTATC TAATGCCGTC CTGAACTCTT CGTGTCGATT GAGGATTGTT GTAACCCCAT ATAAGAGAGT CGGATATAAT TTTTTTCCAT CCTTTTTCAA 8400
CTTAGAAATA TCGAGTTTTA CCGTCATACT ATATGTGCAG GGCGTATTGT CAAAATAGTG GTCGAAATAC TCTTTTCGTG TCCAATTATT TATATCAATC 8500
TTTGTGAATT GCATCATTTA TCCTCCGCAA ATTCTAATTT GCAAATTTTA TTATACTTGA AAAATATGAC CAATTCAACC ACAGAAAGCG GGGTATCAAA 8600
ACTATGTATT ACACCCAAGA ACAGATAGAC CGCGCCAACC AAGCCGACCT TGTTTCTTTC CTGCAATCAC AGGGCGAGCA GCTTACCCGT GCCGGAAATG 8700
AATACCGCTG GAAGCGGCAC GACAGCCTGA CCGTCCGGGG AAACAAATGG TACAGGCACA GCCAGAGTAA GGGCGGTGCA CCCATTGATT TTGTCATGGA 8800
GTTTTTCGGC AAGAGCTTCA CCGAAGCCGT TGAACTCATA ACAAGCCATG AAAACCGCCA CTGCGCCGTT ACCACCGCTG CGTTCGGTCA AGGTTCTGGA 8900
CCAGTTGCGT GAGCGCATAC GCTACTTGCA TTACAGCTTA CGAACCGAAC AGGCTTATGT CCACTGGGTT CGTGCCTTCA TCCGTTTCCA CGGTGTGCGT 9000
CACCCGGCAA CCTTGGGCAG CAGCGAAGTC GAGGCATTTC TGTCCTGGCT GGCGAACGAG CGCAAGGTTT CGGTCTCCAC GCATCGTCAG GCATTGGCGG 9100
CCTTGCTGTT CTTCTACGGC AAGGTGCTGT GCACGGATCT GCCCTGGCTT CAGGAGATCG GAAGACCTCG GCCGTCGCGG CGCTTGCCGG TGGTGCTGAC 9200
CCCGGATGAA GTGGTTCGCA TCCTCGGTTT TCTGGAAGGC GAGCATCGTT TGTTCGCCCA GCTTCTGTAT GGAACGGGCA TGCGGATCAG TGAGGGTTTG 9300
CAACTGCGGG TCAAGGATCT GGATTTCGAT CACGGCACGA TCATCGTGCG GGAGGGCAAG GGCTCCAAGG ATCGGGCCTT GATGTTACCC GAGAGCTTGG 9400
CACCCAGCCT GCGCGAGCAG CTGTCGCGTG CACGGGCATG GTGGCTGAAG GACCAGGCCG AGGGCCGCAG CGGCGTTGCG CTTCCCGACG CCCTTGAGCG 9500
GAAGTATCCG CGCGCCGGGC ATTCCTGGCC GTGGTTCTGG GTTTTTGCGC AGCACACGCA TTCGACCGAT CCACGGAGCG GTGTCGTGCG TCGCCATCAC 9600
ATGTATGACC AGACCTTTCA GCGCGCCTTC AAACGTGCCG TAGAACAAGC AGGCATCACG AAGCCCGCCA CACCGCACAC CCTCCGCCAC TCGTTCGCGA 9700
CGGCCTTGCT CCGCAGCGGT TACGACATTC GAACCGTGCA GGATCTGCTC GGCCATTCCG ACGTCTCTAC GACGATGATT TACACGCATG TGCTGAAAGT 9800
TGGCGGTGCC GGAGTGCGCT CACCGCTTGA TGCGCTGCCG CCCCTCACTA GTGAGAGGTA GGGCAGCGCA AGTCAATCCT GGCGGATTCA CTACCCCTGC 9900
GCGAAGGCCA TCGGTGCCGC ATCGAACGGC CGGTTGCGGA AAGTCCTCCC TGCGTCCGCT GATGGCCGGC AGCAGCCCGT CGTTGCCTGA TGGATCCAAC 10000
CCCTCCGCTG CTATAGTGCA GTCGGCTTCT GACGTTCAGT GCAGCCGTCT TCTGAAAACG ACA
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| attC qacH_sul1 core |
3380-3413 |
34 |
CCGCTAGCGG GCGGCCGGAA GGTGAATGCT AGGC |
| attC aadA1a core |
4697-4750 |
54 |
CGCTTGAGTT AAGCCGCGCC GCGAAGCGGC GTCGGCTTGA ACGAATTGTT AGAC |
| attI |
5553-5608 |
56 |
CTTTGTTTTA GGGCGACTGC CCTGCTGCGT AACATCGTTG CTGCTCCATA ACATCA |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tniA |
In_TnAs3 |
142-1821 |
Transposase |
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+ |
| tniB_p |
In_TnAs3 |
1824-2723 |
Accessory Gene |
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+ |
| GNAT_fam |
In_TnAs3 |
2780-3280 |
Passenger Gene |
Antibiotic Resistance |
- |
| sul1 (ARO:3000410) |
In_TnAs3 |
3408-4247 |
Passenger Gene |
Antibiotic Resistance |
- |
| qacEdelta1 (ARO:3005010) |
In_TnAs3 |
4241-4588 |
Passenger Gene |
Antibiotic Resistance |
- |
| aadA (ARO:3002601) |
In_TnAs3 |
4752-5543 |
Passenger Gene |
Antibiotic Resistance |
- |
| intI1_p |
In_TnAs3 |
5689-6243 |
Integron Integrase |
Class 1 |
+ |
| tnp |
In_TnAs3 |
6414-7616 |
Transposase |
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+ |
| Ccol_ACT_CHL (ARO:3004454) |
In_TnAs3 |
7891-8517 |
Passenger Gene |
Antibiotic Resistance |
- |
| intI1 |
In_TnAs3 |
8848-9861 |
Integron Integrase |
Class 1 |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniA |
TniA |
In_TnAs3 |
1680 |
142-1821 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
| Comment: | can be extended upstream by 12 amino acids| identical to tniA (Tn1721 and In2)| 25% amino acid sequence identity to TnsB from Tn7 |
Protein Sequence:
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MATDTPRIPE QGVATLPDEA WERARRRAEI ISPLAQSETV GHEAADMAAQ ALGLSRRQVY VLIRRARQGS GLVTDLVPGQ SGGGKGKGRL PEPVERVIHE
LLQKRFLTKQ KRSLAAFHRE VTQVCKAQKL RVPARNTVAL RIASLDPRKV IRRREGQDAA RDLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDDRDRQPI
GRPYLTLAID VFTRCVLGMV VTLEAPSAVS VGLCLVHVAC DKRPWLEGLN VEMDWQMSGK PLLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WAEAVARVGV PAVVTRATSF LVDFLPILRR
TLTRTGFVID HIHYYADALK PWIARRERWP SFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALAKLR QQGREQVDES ALFRMIGQMR
EIVTSAQKAT RKARRDADRR QHLKTSARPD KPVPPDTDIA DPQADNLPPA KPFDQIEEW
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniB_p |
TniB_p |
In_TnAs3 |
900 |
1824-2723 |
+ |
| Class: | Accessory Gene |
| Sequence Family: | ATP binding protein |
| Comment: | 3' deletion| similar function to Tn7 tnsC and MuB |
Protein Sequence:
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VDEYPIIDLS HLLPAAQGLA RLPADERIQR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLVGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSPIAT LDMARYLLTR SEGTIGELAH LLMAAAIVAV ESGEEAINHR TLSISTTSRA TKTSRSDCK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| GNAT_fam |
GNAT_fam |
In_TnAs3 |
501 |
2780-3280 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | Acetyltransf_1 (Pfam:PF00583) |
| Comment: | putative acetyltransferase ADU64769.1 |
Protein Sequence:
|
MDSEEPPNVR VACSGDIDEV VRLMHDAAAW MSAKGTPAWD VARIDRTFAE TFVLRSELLV ASCSDGIVGC CTLSAEDPEF WPDALKGEAA YLHKLAVRRT
HAGRGVSSAL IEACRHAART QGCAKLRLDC HPNLRGLYER LGFTHVDTFN PGWDPTFIAE RLELEI
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| sul1 (ARO:3000410) |
Sul1 |
In_TnAs3 |
840 |
3408-4247 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target replacement (ARO:0001002) |
| Transpoase Chemistry: | dihydropteroate synthase |
| Target: | sulfonamide antibiotic (ARO:3000282)||sulfone antibiotic (ARO:3003401) |
| Sequence Family: | sulfonamide resistant sul (ARO:3004238) |
| Comment: | perfect match to reference sequence for ARO:3000410 |
Protein Sequence:
|
MVTVFGILNL TEDSFFDESR RLDPAGAVTA AIEMLRVGSD VVDVGPAASH PDARPVSPAD EIRRIAPLLD ALSDQMHRVS IDSFQPETQR YALKRGVGYL
NDIQGFPDPA LYPDIAEADC RLVVMHSAQR DGIATRTGHL RPEDALDEIV RFFEARVSAL RRSGVAADRL ILDPGMGFFL SPAPETSLHV LSNLQKLKSA
LGLPLLVSVS RKSFLGATVG LPVKDLGPAS LAAELHAIGN GADYVRTHAP GDLRSAITFS ETLAKFRSRD ARDRGLDHA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| qacEdelta1 (ARO:3005010) |
QacEdelta1 |
In_TnAs3 |
348 |
4241-4588 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic efflux (ARO:0010000) |
| Target: | disinfecting agents and antiseptics (ARO:3005386) |
| Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
| Comment: | subunit of the qac multidrug efflux pump||perfect match to reference sequence for ARO:3005010 (bitscore:219) |
Protein Sequence:
|
MKGWLFLVIA IVGEVIATSA LKSSEGFTKL APSAVVIIGY GIAFYFLSLV LKSIPVGVAY AVWSGLGVVI ITAIAWLLHG QKLDAWGFVG MGLIIAAFLL
ARSPSWKSLR RPTPW
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| aadA (ARO:3002601) |
AadA |
In_TnAs3 |
792 |
4752-5543 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Transpoase Chemistry: | aminoglycoside nucleotidyltransferase |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | ANT(3'') (ARO:3004275) |
| Comment: | perfect match to reference sequence for ARO:3002601||Synonyms: aadA1-pm, aadA, aadA1, aad(3'')(9) |
Protein Sequence:
|
MREAVIAEVS TQLSEVVGVI ERHLEPTLLA VHLYGSAVDG GLKPHSDIDL LVTVTVRLDE TTRRALINDL LETSASPGES EILRAVEVTI VVHDDIIPWR
YPAKRELQFG EWQRNDILAG IFEPATIDID LAILLTKARE HSVALVGPAA EELFDPVPEQ DLFEALNETL TLWNSPPDWA GDERNVVLTL SRIWYSAVTG
RIAPKDVAAD WAMERLPAQY QPVILEARQA YLGQEEDRLA SRADQLEEFV HYVKGEITKV VGK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| intI1_p |
IntI1_p |
In_TnAs3 |
555 |
5689-6243 |
+ |
| Class: | Integron Integrase |
| Sub Class: | Class 1 |
| Transpoase Chemistry: | Tyrosine |
| Sequence Family: | Class 1 Integron Tyrosine Integrase |
Protein Sequence:
|
MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVHW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGRRIGRTFS RAVR
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
In_TnAs3 |
1203 |
6414-7616 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | HUH |
Protein Sequence:
|
MAESARHLVD EVFGPRPVRQ WVLSFPYPLR FLFASKPEAI GPVLGIVHRV IAGWLADQAG VPRDTAQCGA VTLIQRFGSA LNLNVHFHML WLDGVYDANV
EPPRRKPRLR RARAPTSAQL TQLANTIAHR VCRHLSRRGW LEGEDESVFL SDSAGSDDGM DGLRMSSMTY RIATGRDAGR KVVTLQTLPG DAGSLEGDAG
KVGGFSLHAG VAAEAHESHK LEKLCRYITR PAISEQRLSI SPQGRVRYQL KTPWRNGTTH VEWDAVDFIA KLAALVPPPR AHLTRFHGVF APNANLRAQL
TPSGRGKRPA GDAAPVDVSA HDEPRSPEQK RRAMSWAQRL KRVFSIDITI CAHCGGAVRI VASIEEPTAI RAILAHFEKH GAREEAHYRP AARAPPGEAA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| Ccol_ACT_CHL (ARO:3004454) |
Ccol_ACT_CHL |
In_TnAs3 |
627 |
7891-8517 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | phenicol antibiotic (ARO:3000387) |
| Sequence Family: | chloramphenicol acetyltransferase (ARO:3000122) |
| Comment: | 96% match to reference sequence for ARO:3004454 (bitscore: 420)||Synonyms: |
Protein Sequence:
|
MMQFTKIDIN NWTRKEYFDH YFDNTPCTYS MTVKLDISKL KKDGKKLYPT LLYGVTTILN RHEEFRTALD KNGQVGVFSE MLPCYTIFHK ETETFSSIWT
EFTADYTEFL QNYQKDIDAY GERKGMFAKP NPPENTFPVS MIPWTSFEGF NLNLKKGYDY LLPIFTFGKY YEDGGKYYIP LSIQVHHAVC DGFHVCRFLD
ELQDLLNK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| intI1 |
IntI1 |
In_TnAs3 |
1014 |
8848-9861 |
+ |
| Class: | Integron Integrase |
| Sub Class: | Class 1 |
| Transpoase Chemistry: | Tyrosine |
| Sequence Family: | Class 1 Integron Tyrosine Integrase |
Protein Sequence:
|
MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVHW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGSKDRALML PESLAPSLRE QLSRARAWWL
KDQAEGRSGV ALPDALERKY PRAGHSWPWF WVFAQHTHST DPRSGVVRRH HMYDQTFQRA FKRAVEQAGI TKPATPHTLR HSFATALLRS GYDIRTVQDL
LGHSDVSTTM IYTHVLKVGG AGVRSPLDAL PPLTSER
|
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| repeat t1 |
In_TnAs3 |
9-27 |
TCAGAAGACG ACTGCACCA |
| repeat t2 |
In_TnAs3 |
49-67 |
AACACGTCGG TCGAGGACT |
| repeat t3 |
In_TnAs3 |
78-97 |
TCAGAAGTGA TCTGCACCAA |
| repeat t4 |
In_TnAs3 |
110-128 |
TCAATACTCG TGTGCACCA |
| repeat i4 |
In_TnAs3 |
9944-9962 |
AGGAGGGACG CAGGCGACT |
| repeat i3 |
In_TnAs3 |
9972-9990 |
CGTCGGGCAG CAACGGACT |
| repeat i2 |
In_TnAs3 |
10014-10032 |
ATCACGTCAG CCGAAGACT |
| IRi |
In_TnAs3 |
10031-10063 |
CTGCAAGTCA CGTCGGCAGA AGACTTTTGC TGT |
|
|
