 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
References | |
|
|
|
|
|
|
|
|
|
| Name: In_Tn1935 |
|
| Family: Tn402 Group: Class 1 |
|
| Evidence of Transposition: no |
|
|
|
| Host |
 |
|
| Host Organism: | Salmonella enterica subsp. enterica serovar Wien ZM3 | Molecular Source: | Tn1935 in plasmid pZM3 |
| | Date of Isolation: | 2019 |
|
| Map |
|
| Terminal Inverted Repeats (IR) |
|
| Sequence |
|
|
|
|
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAGTT GATTGGGCGT AATGGCTGTT GTGCAGCCAG CTCCTGACAG TTCAATATCA GAAGTGATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGAG CATGGCGACG GACACCCCAC GGATTCCAGA ACAAGGCGTG GCCACTCTGC CTGATGAGGC 200
TTGGGAGCGT GCGCGCCGTC GTGCGGAGAT CATCAGTCCG TTGGCGCAGT CGGAGACGGT CGGGCACGAA GCGGCCGATA TGGCGGCTCA GGCGCTGGGC 300
TTGTCTCGGC GCCAGGTATA CGTTCTGATC CGGCGTGCCC GGCAAGGCAG CGGCCTCGTG ACGGATCTGG TGCCCGGCCA GTCCGGTGGA GGTAAAGGTA 400
AGGGGCGCTT GCCGGAACCG GTCGAGCGCG TCATCCACGA GCTACTGCAA AAGCGGTTCC TGACCAAGCA GAAGCGCAGC CTAGCGGCCT TTCACCGCGA 500
AGTCACTCAG GTGTGCAAGG CTCAAAAACT GCGAGTGCCG GCGCGCAATA CCGTGGCCTT ACGGATCGCT AGCCTTGACC CGCGCAAGGT CATCCGCCGG 600
CGGGAAGGCC AGGATGCCGC TCGTGACCTA CAAGGTGTGG GCGGCGAGCC TCCTGCCGTG ACCGCGCCGC TGGAGCAGGT GCAGATAGAC CATACGGTCA 700
TCGACCTGAT CGTGGTCGAT GACCGCGACC GGCAACCTAT TGGCCGCCCG TACCTGACCC TCGCCATCGA CGTGTTCACC CGCTGCGTGC TCGGCATGGT 800
CGTCACGCTG GAAGCGCCGT CTGCCGTTTC GGTTGGCCTG TGCCTCGTGC ATGTCGCCTG CGACAAGCGC CCTTGGCTGG AAGGACTGAA CGTGGAAATG 900
GATTGGCAGA TGAGCGGCAA GCCCTTGCTG CTCTACCTAG ACAACGCGGC CGAGTTCAAG AGCGAGGCCC TGCGCCGGGG TTGCGAGCAG CATGGCATCC 1000
GGCTGGACTA TCGCCCGCTG GGACAGCCGC ACTATGGCGG CATCGTGGAA CGGATCATCG GCACGGCGAT GCAGATGATT CACGACGAAC TGCCGGGAAC 1100
GACCTTCTCC AACCCTGACC AGCGCGGCGA CTACGATTCC GAAAACAAGG CCGCCCTGAC GCTGCGCGAG CTAGAGCGCT GGCTCACATT GGCGGTCGGC 1200
ACCTACCACG GTTCGGTGCA CAACGGCCTG CTCCAACCGC CGGCCGCGCG CTGGGCCGAG GCCGTGGCGC GTGTCGGCGT ACCGGCCGTC GTCACACGCG 1300
CTACTTCGTT CCTGGTCGAT TTTCTGCCGA TCCTCCGGCG CACGCTGACC CGCACCGGCT TTGTCATCGA CCACATCCAC TACTACGCCG ATGGGCACTG 1400
TTGCAAATAG TCGGTGGTGA TAAACTTATC ATCCCCTTTT GCTGATGGAG CTGCACATGA ACCCATTCAA AGGCCGGCAT TTTCAGCGTG ACATCATTCT 1500
GTGGGCCGTA CGCTGGTACT GCAAATACGG CATCAGTTAC CGTGAGCTGC AGGAGATGCT GGCTGAACGC GGAGTGAATG TCGATCACTC CACGATTTAC 1600
CGCTGGGTTC AGCGTTATGC GCCTGAAATG GAAAAACGGC TGCGCTGGTA CTGGCGTAAC CCTTCCGATC TTTGCCCGTG GCACATGGAT GAAACCTACG 1700
TGAAGGTCAA TGGCCGCTGG GCGTATCTGT ACCGGGCCGT CGACAGCCGG GGCCGCACTG TCGATTTTTA TCTCTCCTCC CGTCGTAACA GCAAAGCTGC 1800
ATACCGGTTT CTGGGTAAAA TCCTCAACAA CGTGAAGAAG TGGCAGATCC CGCGATTCAT CAACACGGAT AAAGCGCCCG CCTATGGTCG CGCGCTTGCT 1900
CTGCTCAAAC GCGAAGGCCG GTGCCCGTCT GACGTTGAAC ACCGACAGAT TAAGTACCGG AACAACGTGA TTGAATGCGA TCATGGCAAA CTGAAACGGA 2000
TAATCGGCGC CACGCTGGGA TTTAAATCCA TGAAGACGGC TTACGCCACC ATCAAAGGTA TTGAGGTGAT GCGTGCACTA CGCAAAGGCC AGGCCTCAGC 2100
ATTTTATTAT GGTGATCCCC TGGGCGAAAT GCGCCTGGTA AGCAGAGTTT TTGAAATGTA AGGCCTTTGA ATAAGACAAA AGGCTGCCTC ATCGCTAACT 2200
TTGCAACAGT GCCAATTTAT GAGTAAAGGA TTATGTCCAC GATAAGCACC TGGGTCGATT CCTGGGAGGC GGCCATGAGG GTAGGGAAGC GCCGTCCCGT 2300
CAAGTCAGCG TAATGCTCTG CCAGTGTTAC AACCAATTAA CCAATTCTGA TTAGAAAAAC TCATCGAGCA TCAAATGAAA CTGCAATTTA TTCATATCAG 2400
GATTATCAAT ACCATATTTT TGAAAAAGCC GTTTCTGTAA TGAAGGAGAA AACTCACCGA GGCAGTTCCA TAGGATGGCA AGATCCTGGT ATCGGTCTGC 2500
GATTCCGACT CGTCCAACAT CAATACAACC TATTAATTTC CCCTCGTCAA AAATAAGGTT ATCAAGTGAG AAATCACCAT GAGTGACGAC TGAATCCGGT 2600
GAGAATGGCA AAAGCTTATG CATTTCTTTC CAGACTTGTT CAACAGGCCA GCCATTACGC TCGTCATCAA AATCACTCGC ATCAACCAAA CCGTTATTCA 2700
TTCGTGATTG CGCCTGAGCG AGACGAAATA CGCGATCGCT GTTAAAAGGA CAATTACAAA CAGGAATCGA ATGCAACCGG CGCAGGAACA CTGCCAGCGC 2800
ATCAACAATA TTTTCACCTG AATCAGGATA TTCTTCTAAT ACCTGGAATG CTGTTTTCCC GGGGATCGCA GTGGTGAGTA ACCATGCATC ATCAGGAGTA 2900
CGGATAAAAT GCTTGATGGT CGGAAGAGGC ATAAATTCCG TCAGCCAGTT TAGTCTGACC ATCTCATCTG TAACATCATT GGCAACGCTA CCTTTGCCAT 3000
GTTTCAGAAA CAACTCTGGC GCATCGGGCT TCCCATACAA TCGATAGATT GTCGCACCTG ATTGCCCGAC ATTATCGCGA GCCCATTTAT ACCCATATAA 3100
ATCAGCATCC ATGTTGGAAT TTAATCGCGG CCTCGAGCAA GACGTTTCCC GTTGAATATG GCTCATAACA CCCCTTGTAT TACTGTTTAT GTAAGCAGAC 3200
AGTTTTATTG TTCATGATGA TATATTTTTA TCTTGTGCAA TGTAACATCA GAGGGCACTG TTGCAAATAG TCGGTGGTGA TAAACTTATC ATCCCCTTTT 3300
GCTGATGGAG CTGCACATGA ACCCATTCAA AGGCCGGCAT TTTCAGCGTG ACATCATTCT GTGGGCCGTA CGCTGGTACT GCAAATACGG CATCAGTTAC 3400
CGTGAGCTGC AGGAGATGCT GGCTGAACGC GGAGTGAATG TCGATCACTC CACGATTTAC CGCTGGGTTC AGCGTTATGC GCCTGAAATG GAAAAACGGC 3500
TGCGCTGGTA CTGGCGTAAC CCTTCCGATC TTTGCCCGTG GCACATGGAT GAAACCTACG TGAAGGTCAA TGGCCGCTGG GCGTATCTGT ACCGGGCCGT 3600
CGACAGCCGG GGCCGCACTG TCGATTTTTA TCTCTCCTCC CGTCGTAACA GCAAAGCTGC ATACCGGTTT CTGGGTAAAA TCCTCAACAA CGTGAAGAAG 3700
TGGCAGATCC CGCGATTCAT CAACACGGAT AAAGCGCCCG CCTATGGTCG CGCGCTTGCT CTGCTCAAAC GCGAAGGCCG GTGCCCGTCT GACGTTGAAC 3800
ACCGACAGAT TAAGTACCGG AACAACGTGA TTGAATGCGA TCATGGCAAA CTGAAACGGA TAATCGGCGC CACGCTGGGA TTTAAATCCA TGAAGACGGC 3900
TTACGCCACC ATCAAAGGTA TTGAGGTGAT GCGTGCACTA CGCAAAGGCC AGGCCTCAGC ATTTTATTAT GGTGATCCCC TGGGCGAAAT GCGCCTGGTA 4000
AGCAGAGTTT TTGAAATGTA AGGCCTTTGA ATAAGACAAA AGGCTGCCTC ATCGCTAACT TTGCAACAGT GCCCGCCGAT GCGCTCAAGC CGTGGATTGC 4100
GCGGCGTGAA CGCTGGCCGT CCTTTCTGAT CCGGCGCGAT CCGCGCGACA TCAGCCGTAT CTGGGTCCTG GAACCGGAGG GACAGCATTA CCTGGAAATT 4200
CCCTACCGTA CCTTGTCGCA TCCGGCTGTC ACCCTCTGGG AACAACGGCA GGCGCTGGCG AAACTGCGGC AGCAAGGGCG CGAACAGGTG GATGAGTCGG 4300
CGCTGTTCCG CATGATCGGC CAGATGCGTG AGATTGTGAC CAGCGCGCAG AAGGCCACAC GCAAGGCGCG GCGTGACGCG GATCGCCGCC AGCACCTCAA 4400
GACATCAGCT CGGCCGGACA AGCCCGTTCC GCCGGATACG GATATTGCCG ACCCGCAGGC AGACAACTTG CCACCCGCCA AACCGTTCGA CCAGATTGAG 4500
GAGTGGTAGC CGTGGACGAA TATCCCATCA TCGACCTGTC CCACCTGCTG CCGGCGGCCC AGGGCTTGGC CCGTCTTCCG GCGGACGAGC GCATCCAGCG 4600
CCTTCGCGCC GACCGCTGGA TCGGCTATCC GCGCGCAGTC GAGGCGCTGA ACCGGCTGGA AGCCCTTTAT GCGTGGCCAA ACAAGCAACG CATGCCCAAC 4700
CTGCTGCTGG TTGGCCCGAC CAACAATGGC AAGTCGATGA TCGTCGAGAA GTTCCGCCGC ACCCACCCGG CCAGCTCCGA CGCCGACCAG GAGCACATCC 4800
CGGTGTTGGT CGTGCAGATG CCGTCCGAGC CGTCCGTGAT CCGCTTCTAC GTCGCGCTGC TCGCCGCGAT GGGCGCGCCG CTGCGCCCAC GCCCACGGTT 4900
GCCGGAAATG GAGCAACTGG CTCTGGCACT GCTGCGCAAG GTCGGCGTGC GCATGCTGGT GATCGACGAG CTGCACAACG TGCTGGCCGG CAACAGCGTC 5000
AACCGCCGGG AATTCCTCAA CCTGCTGCGC TTCCTCGGCA ACGAACTGCG CATCCCGTTG GTTGGGGTAG GCACGCGCGA CGCCTACCTA GCCATCCGCT 5100
CCGATGACCA GTTGGAAAAT CGCTTCGAGC CGATGATGCT GCCGGTATGG GAGGCCAACG ACGATTGCTG CTCACTGCTG GCCAGCTTCG CCGCTTCGCT 5200
CCCGCTGCGC CGGCCTTCCC CAATTGCCAC GCTGGACATG GCTCGCTACC TGCTCACACG CAGCGAGGGC ACCATAGGGG AACTGGCGCA CTTGCTGATG 5300
GCGGCGGCCA TCGTCGCCGT GGAGAGCGGC GAGGAAGCGA TCAACCATCG CACACTCAGC ATGGCCTGTT GAGTTGCATC TAAAATTGAC CCACTGGGGG 5400
TGCGGACGAT TTCTTGGACG GTTTATACGG ACATCAATCC GACCGCATGA CGATACTCGA TGGGACTACG CCCGCCAAGC GACACTTTGA TGCGGCGCTC 5500
GTTGTACCAG TGGATATAGG CATCGATTCG CGTCATGAGG TCTTTCAGCG TCACGTGCTG CCAATTCCTC GGGTAGATTA GTTCGGTCTT CAATCGTCCG 5600
AAAAAGCCCT CGCATGCAGC ATTGTCTGGC GAGCAGCCCT TTTTGGACAT CGACCGCGTT AATTGGGCAT TTTCAGTGCG GCGGATCCAC GCAGGCCAGC 5700
GATAATGCGA GCCCCTGTCC GAATGGATAA CCGGATGCTC ACCGGGTCGC AGTGTCCGTA CCGCGTGATC CAGCATGGTA TTGACCAGGT TCGCATCCGG 5800
GCTGGTGCCG ATATTCCAGG CCACCACCAG CCCATCGAAG CAATCGACGA TCGGCGAGAC GTAGACCTTC CCTGCCGGAA TGTGTATTTC CGTCAGATCG 5900
GTCAACCATT TCGTATTCGG CGCCGACGCG TGAAAGTCGC GATTCAGCAG ATTCGGGACC GCTGGTGTCG GGTCGCCAGC ATACGCCGAG AAGCGCCGGC 6000
GGCGCGGTGT TCTCACGACC AGACGCTCTT GCGCCATCAA GCGACGCACG ACCTTCTCGG ACACACGCAT GCCACCAAGG CGCAAGGCAC TATCAATGCG 6100
TCGATAGCCA TAGCAGCGGT AGTTGTCCTC GAAGATAGTC CGAATGACCT CACGCACCTG CGTGTACTTG TCGGGCCGCG TCTGCCGCAG GCGTTGATAG 6200
AAGTATGTGC TGCGCGCCAG CTTCAGGCCG CACAACAGAT TGGCTAATGG AAACGTGACT CTGAGGGCAT CAACCACCTT CGTTTTTTCT CGGCTTGTCA 6300
GTTCGAGGGG GTTGATGCCC ATGTCTTTTT TTATCAATTC ACTCGCCTTC TCCAGAATTG CATTCTCCAT GCGAAGCCGC TGGTTCTGGC TCTCCAGTTC 6400
GGCCAGTTCC CTGAGTAGTG CCTCATGCCG CTGCTCGAGC GAGGTGTCAC CTTTCTTCTT TGTCATGGGT TTTAGGGGCA CTTTGCCAAG TAATCGATGC 6500
TGCCAGTTAT ACAACGTTGG TCGCGATACA CCGACAGTGT CGGCCACATC CTTTGCCGAA CCTACGCGCA GGTTCAGTGC AATGACGGCT TGCTGCTTCT 6600
CGAGGCGAGA GCGGGCGACT GTGGGAGCGC TGCTGCCGAC GACCGTCCTA GCGAATTCAG GGCGTAAATC ACGGATCCAG GCACGCAAGG CCTCGCGGCT 6700
TGGGTAGCCC AGGCTTCGGA TTGTGTGACT CAGGCAGTAG CCTTGTTCGA TATAGTGATC TACTGCCCGT TGCTTTTGCT CATCGGTGTA CTGCCGTTTT 6800
ATCCGTTGAT AGCCTCGGCG AAGATCCTGA TTCCGTTCGA ATTCTGCCAA CCAGGCCTTC AGCGAGTTCT TGGTGGGGTA TCCCAGCTGC CGTAGTGTGG 6900
CGCTCATCCG GCGCCCAAGC TTCAGGTACA ACCTCACGGC TCGAAGGCGA TCTTCATACG AATACATGAA CTACTCCTAA AGTAGTCCAA GATTTTGTCC 7000
GCACCCCAAC TTAGGGTAAA GATTTGCGTC GAAATTTGAC CCACGTATGA CACTGTTTCC CGTCTGGATA TGGCGGGAGA AATCAAGGAG TGATAAACGT 7100
GGCGATATTG AGCGCAATTC GACGCTGGCA TTTTCGCGAT GGTGCGTCGA TTCGGGAAAT AGCCCGACGA AGCGGCCTGT CCAGGAACAC CGTTCGCAAG 7200
TATTTGCAAA GCAAGGTGGT TGAACCGCAG TACCCAGCGC GAGACAGCGT TGGCAAGTTA AGTCCTTTTG AGCCCAAGTT AAGGCAGTGG CTCTCCACCG 7300
AGCACAAAAA GACAAAGAAG CTGCGCAGAA ACCTGCGCAG CATGTACCGG GATTTGGTCG CTTTGGGCTT TACCGGGTCT TATGACCGAG TGTGTGCCTT 7400
TGCCCGACAG TGGAAAGATT CCGAACAGTT CAAGGCGCAA ACCTCGGGCA AGGGTTGTTT CATCCCCTTG CGCTTTGCTT GTGGCGAAGC CTTCCAATTC 7500
GATTGGAGTG AGGACTTTGC CCGCATAGCG GGCAAACAGG TCAAACTTCA GATTGCCCAG TTTAAGTTGG CCCACAGCCG GGCCTTTGTG CTTCGGGCTT 7600
ACTACCAGCA AAAACATGAA ATGCTGTTTG ATGCCCACTG GCATGCCTTT CAAATCTTCG GTGGCATTCC CAAGCGCGGC ATCTACGACA ACATGAAGAC 7700
CGCTGTGGAT TCGGTGGGGC GTGGCAAAGA GCGCAGGGTC AATCAGCGGT TCACTGCCAT GGTCAGCCAC TACCTGTTTG ATGCGCAGTT CTGTAATCCA 7800
GCATCGGGTT GGGAGAAAGG CCAGATTGAG AAGAACGTGC AGGATTCCCG CCAACGCCTG TGGCAAGGGG CACCAGACTT TCAAAGCCTT GCTGATTTGA 7900
ATGTGTGGCT TGAGCATCGC TGCAAAGCGC TGTGGTCTGA GCTGCGCCAC CCCGAATTGG ACCAAACCGT GCAAGAGGCC TTTGCCGATG AACAAGGCGA 8000
GTTGATGGCG CTACCCAATG CCTTTGATGC ATTCGTGGAG CAAACCAAGC GAGTCACTTC AACCTGCCTT GTTCACCACG AGGGCAATCG CTACAGCGTT 8100
CCTGCCAGTT ACGCCAACAG GGCCATCAGC CTTCGGATTT ATGCAGACAA GCTGGTGATG GCTGCCGAAG GCCAACACAT TGCCGAGCAT CCAAGATTGT 8200
TTGGCAGTGG CCACGCTCGG CGTGGCCACA CACAATACGA CTGGCACCAT TACTTGTCTG TGCTTCAGAA GAAACCTGGG GCGTTGCGCA ATGGTGCGCC 8300
ATTTGCTGAA TTGCCACCCG CGTTCAAGAA GCTTCAATCC ATCTTGCTGC AACGCCCCGG CGGTGACCGT GACATGGTGG AAATTCTGGC CCTTGTATTG 8400
CACCACGATG AAGGTGCGGT ACTCAGTGCT GTGGAATTGG CATTGGAGTG TGGCAAGCCA TCGAAGGAGC ATGTGCTTAA TCTGTTGGGA CGTTTGACCG 8500
AAGAACCTCC ACCCAAACCG ATTCCAATTC CCAAGGGGTT AAGGCTGACA TTGGAACCAC AGGCCAACGT GAACCGCTAT GACAGTTTAA GGAGAGCCCA 8600
TGATGCAGCA TGAAGGCCAT GTGAGAATCC TCAAATCCTT GAAACTCTTT GGCATGGCAC ACGCCATTGA GGAGTTGGGC AATCAGAATT CACCAGCATT 8700
TAATCAAGCC TTGCCCATGC TGGACAGCTT GATTAAAGCT GAAGTGGCAG AGCGTGAAGT ACGTTCGGTG AACTATCAAT TGCGGGTGGC CAAGTTCCCC 8800
GTGTATCGGG ACTTGGTGGG CTTTGACTTC AGTCAAAGCC TGGTTAATGA GGCCACGGTC AAACAATTGC ACCGGTGCGA CTTCATGGAA CAAGCCCAGA 8900
ACGTGGTGCT GATTGGTGGG CCAGGCACAG GCAAGACTCA CCTGGCCACA GCCATTGGTA CACAAGCAGT GATGCACTTG AACCGACGGG TGCGTTTCTT 9000
CTCCACCGTG GATTTGGTCA ATGCACTGGA GCAAGAGAAA TCATCTGGGC GTCAGGGACA AATCGCAAAC CGTCTGTTGT ATGCCGATTT GGTGATTCTG 9100
GATGAGCTGG GATATTTGCC TTTTAGCCAA ACCGGTGGGG CACTGCTGTT TCACCTGCTC TCAAAGCTGT ACGAAAAAAC CAGCGTGATA CTGACCACCA 9200
ACTTGAGCTT CTCGGAATGG AGCCGAGTGT TTGGCGATGA AAAGATGACA ACAGCGTTGT TGGACCGACT AACCCACCAC TGCCACATCC TGGAAACCGG 9300
CAATGAAAGT TACCGCTTCA AACACAGTTC AACTCAGAAT AAGCAGGAGG AAAAACAGAC CCGCAAACTG AAAATCGAGA CATAATTCTG ACAACAAGGG 9400
GTGGGTCAAA ATTCAATGCA AATCCCGGGT CAAATTTGGG TGCAAATCAA CAGATATCGA CAACCTCTCG CGCAACCAAG ACATCGCGGT CGGACTGCAA 9500
GTGATCTTGA AGCCACGGGC CCGTCCCACC CCGACATGGA CCTCGATGCC CGAACGGACG TTAGATTTCG AGTTCTAGGC GTTCTGCGAT GAAGGTTGGA 9600
TCCCAGCCGG GATTGAAAGT GTCGACGTGG GTGAATCCGA GCCGCTCGTA TAGGCCACGC AGGTTCGGGT GGCAGTCGAG CCGCAGCTTG GCGCACCCCT 9700
GCGTTCGCGC GGCATGGCGG CAAGCCTCGA TCAGCGCGGA GCTGACACCC CGGCCCGCAT GTGTCCGTCG CACCGCGAGC TTGTGCAGAT ATGCGGCCTC 9800
CCCCTTGAGG GCGTCGGGCC AGAACTCGGG ATCCTCGGCC GACAAGGTGC AACAGCCGAC GATGCCGTCG CTGCAACTCG CGACTAGGAG CTCGGATCTC 9900
AGGACGAAGG TCTCCGCGAA TGTCCGGTCG ATCCGCGCGA CGTCCCAGGC GGGCGTTCCC TTGGCGGACA TCCACGCCGC AGCGTCGTGC ATCAGCCGCA 10000
CAACCTCGTC GATATCACCC GAGCAGGCGA CCCGAACGTT CGGAGGCTCC TCGCTGTCCA TTCGCTCCCC TGGCGCGGTA TGAACCGCCG CCTCATAGTG 10100
CAGTTTGATC CTGACGAGCC CAGCATGTCT GCGCCCACCT TCGCGGAACC TGACCAGGGT CCGCTAGCGG GCGGCCGGAA GGTGAATGCT AGGCATGATC 10200
TAACCCTCGG TCTCTGGCGT CGCGACTGCG AAATTTCGCG AGGGTTTCCG AGAAGGTGAT TGCGCTTCGC AGATCTCCAG GCGCGTGGGT GCGGACGTAG 10300
TCAGCGCCAT TGCCGATCGC GTGAAGTTCC GCCGCAAGGC TCGCTGGACC CAGATCCTTT ACAGGAAGGC CAACGGTGGC GCCCAAGAAG GATTTCCGCG 10400
ACACCGAGAC CAATAGCGGA AGCCCCAACG CCGACTTCAG CTTTTGAAGG TTCGACAGCA CGTGCAGCGA TGTTTCCGGT GCGGGGCTCA AGAAAAATCC 10500
CATCCCCGGA TCGAGGATGA GCCGGTCGGC AGCGACCCCG CTCCGTCGCA AGGCGGAAAC CCGCGCCTCG AAGAACCGCA CAATCTCGTC GAGCGCGTCT 10600
TCGGGTCGAA GGTGACCGGT GCGGGTGGCG ATGCCATCCC GCTGCGCTGA GTGCATAACC ACCAGCCTGC AGTCCGCCTC AGCAATATCG GGATAGAGCG 10700
CAGGGTCAGG AAATCCTTGG ATATCGTTCA GGTAGCCCAC GCCGCGCTTG AGCGCATAGC GCTGGGTTTC CGGTTGGAAG CTGTCGATTG AAACACGGTG 10800
CATCTGATCG GACAGGGCGT CTAAGAGCGG CGCAATACGT CTGATCTCAT CGGCCGGCGA TACAGGCCTC GCGTCCGGAT GGCTGGCGGC CGGTCCGACA 10900
TCCACGACGT CTGATCCGAC TCGCAGCATT TCGATCGCCG CGGTGACAGC GCCGGCGGGG TCTAGCCGCC GGCTCTCATC GAAGAAGGAG TCCTCGGTGA 11000
GATTCAGAAT GCCGAACACC GTCACCATGG CGTCGGCCTC CGCAGCGACT TCCACGATGG GGATCGGGCG AGCAAAAAGG CAGCAATTAT GAGCCCCATA 11100
CCTACAAAGC CCCACGCATC AAGCTTTTGC CCATGAAGCA ACCAGGCAAT GGCTGTAATT ATGACGACGC CGAGTCCCGA CCAGACTGCA TAAGCAACAC 11200
CGACAGGGAT GGATTTCAGA ACCAGAGAAA GAAAATAAAA TGCGATGCCA TAACCGATTA TGACAACGGC GGAAGGGGCA AGCTTAGTAA AGCCCTCGCT 11300
AGATTTTAAT GCGGATGTTG CGATTACTTC GCCAACTATT GCGATAACAA GAAAAAGCCA GCCTTTCATG ATATATCTCC CAATTTGTGT AGGGCTTATT 11400
ATGCACGCTT AAAAATAATA AAAGCAGACT TGACCTGATA GTTTGGCTGT GAGCAATTAT GTGCTTAGTG CATCTAACGC TTGAGTTAAG CCGCGCCGCG 11500
AAGCGGCGTC GGCTTGAACG AATTGTTAGA CATTATTTGC CGACTACCTT GGTGATCTCG CCTTTCACGT AGTGAACAAA TTCTTCCAAC TGATCTGCGC 11600
GCGAGGCCAA GCGATCTTCT TCTTGTCCAA GATAAGCCTG TCTAGCTTCA AGTATGACGG GCTGATACTG GGCCGGCAGG CGCTCCATTG CCCAGTCGGC 11700
AGCGACATCC TTCGGCGCGA TTTTGCCGGT TACTGCGCTG TACCAAATGC GGGACAACGT AAGCACTACA TTTCGCTCAT CGCCAGCCCA GTCGGGCGGC 11800
GAGTTCCATA GCGTTAAGGT TTCATTTAGC GCCTCAAATA GATCCTGTTC AGGAACCGGA TCAAAGAGTT CCTCCGCCGC TGGACCTACC AAGGCAACGC 11900
TATGTTCTCT TGCTTTTGTC AGCAAGATAG CCAGATCAAT GTCGATCGTG GCTGGCTCGA AGATACCTGC AAGAATGTCA TTGCGCTGCC ATTCTCCAAA 12000
TTGCAGTTCG CGCTTAGCTG GATAACGCCA CGGAATGATG TCGTCGTGCA CAACAATGGT GACTTCTACA GCGCGGAGAA TCTCGCTCTC TCCAGGGGAA 12100
GCCGAAGTTT CCAAAAGGTC GTTGATCAAA GCTCGCCGCG TTGTTTCATC AAGCCTTACG GTCACCGTAA CCAGCAAATC AATATCACTG TGTGGCTTCA 12200
GGCCGCCATC CACTGCGGAG CCGTACAAAT GTACGGCCAG CAACGTCGGT TCGAGATGGC GCTCGATGAC GCCAACTACC TCTGATAGTT GAGTCGATAC 12300
TTCGGCGATC ACCACTTCCC TCATGATGTT TAACGTTTGA AATAAGGGGC GCCGAGCGCC AGCGAGGGGA GCCAAAAGCT TGCTTTTGGC CGTCCCGACT 12400
TGATTGAAGG GTTGGGCGAT TTTGCCATTA GATTTTTTAT AAATTTAGTG TGTTTAGAAT GGTGATCGCA TTTTTCTTGG CTTTTATGCT TGATGTTAAA 12500
TTCGACCCCA AGTTTCCTGT AAGTGCGGAC ACAAAAACAT ATTTATGTCC TGATTTGCTT ATAATAAACC CTTCAAACCA TCCGTTTTGT AAGGTTCTAT 12600
TTGCTGTGAA TCCTGCACCA GTTTTCCCAT ACAGTTTTGT ACTATTATCC AGATCTTGTA GATACATGTT CTCTATGGTG TTTTCTATGG CTGAGTTTTT 12700
AACTGGGAGA TTGTGATTAA TAATTTTACG CAGGAATTGA ATTTGTTCTT CTGGTGAAAT TTTTAAGCTA CTTTCGAGCC ATGCTTCTGT TAATCCGTTG 12800
TTTCTTTCTT TATCTCCAGA GAAGTCTTGA TTTCCATAAT CAAAATCTTT GAGATAATTC TTGATTTTAT TTAATCCAAT TTTTTGGGTT ATTTCTTGCG 12900
AAACCCAAAC AACAGAAAAT TGCATCCACG TCTTTGGTGT ATGATTGCTG TTCCAGATCT CCATTCCTTT GGGGGTTTTA TCCCATTTGA ATATGGTTTT 13000
CTGATCTATT ATTTCCGCAT CAAATGCCAT AAGTGATAAT GCGATCTTGA AAGTTGAATC TGGTGCCATT TGCGTTGCAC ACTTTGCTTT ATTGAATTGA 13100
GCAATTTCAG CGTTTGTGGA TGCATCGTAA AGTAAAAAAC AACCTTCAGT TCCTTCAAAT AATGGAGATG CAACAGTAGA GATATCTGTT GATGCACTGG 13200
CGCTGCTGTA GATAATATTT GCAATTATTA AAAAAATAGC GAAGTTGATA TGTATTGTGT TTTTCATAAT AAGTATTGGT TTGGTAAAGG GCTTAATTTT 13300
AACGGCTAAC AATTAATGAG GCTCCGGGTT CGCCCAACTT TGTTTTAGGG CGACTGCCCT GCTGCGTAAC ATCGTTGCTG CTCCATAACA TCAAACATCG 13400
ACCCACGGCG TAACGCGCTT GCTGCTTGGA TGCCCGAGGC ATAGACTGTA CCCCAAAAAA ACAGTCATAA CAAGCCATGA AAACCGCCAC TGCGCCGTTA 13500
CCACCGCTGC GTTCGGTCAA GGTTCTGGAC CAGTTGCGTG AGCGCATACG CTACTTGCAT TACAGCTTAC GAACCGAACA GGCTTATGTC CACTGGGTTC 13600
GTGCCTTCAT CCGTTTCCAC GGTGTGCGTC ACCCGGCAAC CTTGGGCAGC AGCGAAGTCG AGGCATTTCT GTCCTGGCTG GCGAACGAGC GCAAGGTTTC 13700
GGTCTCCACG CATCGTCAGG CATTGGCGGC CTTGCTGTTC TTCTACGGCA AGGTGCTGTG CACGGATCTG CCCTGGCTTC AGGAGATCGG AAGACCTCGG 13800
CCGTCGCGGC GCTTGCCGGT GGTGCTGACC CCGGATGAAG TGGTTCGCAT CCTCGGTTTT CTGGAAGGCG AGCATCGTTT GTTCGCCCAG CTTCTGTATG 13900
GAACGGGCAT GCGGATCAGT GAGGGTTTGC AACTGCGGGT CAAGGATCTG GATTTCGATC ACGGCACGAT CATCGTGCGG GAGGGCAAGG GCTCCAAGGA 14000
TCGGGCCTTG ATGTTACCCG AGAGCTTGGC ACCCAGCCTG CGCGAGCAGC TGTCGCGTGC ACGGGCATGG TGGCTGAAGG ACCAGGCCGA GGGCCGCAGC 14100
GGCGTTGCGC TTCCCGACGC CCTTGAGCGG AAGTATCCGC GCGCCGGGCA TTCCTGGCCG TGGTTCTGGG TTTTTGCGCA GCACACGCAT TCGACCGATC 14200
CACGGAGCGG TGTCGTGCGT CGCCATCACA TGTATGACCA GACCTTTCAG CGCGCCTTCA AACGTGCCGT AGAACAAGCA GGCATCACGA AGCCCGCCAC 14300
ACCGCACACC CTCCGCCACT CGTTCGCGAC GGCCTTGCTC CGCAGCGGTT ACGACATTCG AACCGTGCAG GATCTGCTCG GCCATTCCGA CGTCTCTACG 14400
ACGATGATTT ACACGCATGT GCTGAAAGTT GGCGGTGCCG GAGTGCGCTC ACCGCTTGAT GCGCTGCCGC CCCTCACTAG TGAGAGGTAG GGCAGCGCAA 14500
GTCAATCCTG GCGGATTCAC TACCCCTGCG CGAAGGCCAT CGGTGCCGCA TCGAACGGCC GGTTGCGGAA AGTCCTCCCT GCGTCCGCTG ATGGCCGGCA 14600
GCAGCCCGTC GTTGCCTGAT GGATCCAACC CCTCCGCTGC TATAGTGCAG TCGGCTTCTG ACGTTCAGTG CAGCCGTCTT CTGAAAACGA CA
|
|
|
|
| Recombination Sites |
|
|
| Name |
Coordinates |
Gene |
Sequence |
| attC qacH_sul1 core |
10161-10194 |
34 |
CCGCTAGCGG GCGGCCGGAA GGTGAATGCT AGGC |
| attC aadA1a core |
11478-11531 |
54 |
CGCTTGAGTT AAGCCGCGCC GCGAAGCGGC GTCGGCTTGA ACGAATTGTT AGAC |
| attI |
13338-13393 |
56 |
CTTTGTTTTA GGGCGACTGC CCTGCTGCGT AACATCGTTG CTGCTCCATA ACATCA |
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tniA_p |
In_Tn1935 |
142-1393 |
Transposase |
|
+ |
| tnpA |
IS26 |
1457-2161 |
Transposase |
|
+ |
| APH(3')-Ia (ARO:3002641) |
Tn4352 |
2351-3166 |
Passenger Gene |
Antibiotic Resistance |
- |
| tnpA |
IS26 |
3317-4021 |
Transposase |
|
+ |
| tniA 3' end |
In_Tn1935 |
4069-4509 |
Transposase |
|
+ |
| tniB delta1 |
In_Tn1935 |
4512-5372 |
Accessory Gene |
|
+ |
| tnp |
IS1353 |
5423-6967 |
Transposase |
|
- |
| istA |
IS1326_IS1353 |
7090-8613 |
Transposase |
|
+ |
| istB |
IS1326_IS1353 |
8600-9385 |
Accessory Gene |
ATPase Transposition Helper |
+ |
| GNAT_fam |
In_Tn1935 |
9561-10061 |
Passenger Gene |
Antibiotic Resistance |
- |
| sul1 (ARO:3000410) |
In_Tn1935 |
10189-11028 |
Passenger Gene |
Antibiotic Resistance |
- |
| qacEdelta1 (ARO:3005010) |
In_Tn1935 |
11022-11369 |
Passenger Gene |
Antibiotic Resistance |
- |
| aadA (ARO:3002601) |
In_Tn1935 |
11533-12324 |
Passenger Gene |
Antibiotic Resistance |
- |
| bla OXA-1 (ARO:3001396) |
In_Tn1935 |
12437-13312 |
Passenger Gene |
Antibiotic Resistance |
- |
| intI1 |
In_Tn1935 |
13477-14490 |
Integron Integrase |
Class 1 |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniA_p |
TniA_p |
In_Tn1935 |
1252 |
142-1393 |
+ |
| Class: | Transposase |
| Function: | integrase |
| Transpoase Chemistry: | DDE |
| Comment: | could be extanded 12 amino acids upstream||Contains the first 429 amino acids of tniA (In2)||probably truncated by insertion of IS26 |
Protein Sequence:
|
MATDTPRIPE QGVATLPDEA WERARRRAEI ISPLAQSETV GHEAADMAAQ ALGLSRRQVY VLIRRARQGS GLVTDLVPGQ SGGGKGKGRL PEPVERVIHE
LLQKRFLTKQ KRSLAAFHRE VTQVCKAQKL RVPARNTVAL RIASLDPRKV IRRREGQDAA RDLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDDRDRQPI
GRPYLTLAID VFTRCVLGMV VTLEAPSAVS VGLCLVHVAC DKRPWLEGLN VEMDWQMSGK PLLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WAEAVARVGV PAVVTRATSF LVDFLPILRR
TLTRTGFVID HIHYYAD
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
IS26 |
705 |
1457-2161 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MNPFKGRHFQ RDIILWAVRW YCKYGISYRE LQEMLAERGV NVDHSTIYRW VQRYAPEMEK RLRWYWRNPS DLCPWHMDET YVKVNGRWAY LYRAVDSRGR
TVDFYLSSRR NSKAAYRFLG KILNNVKKWQ IPRFINTDKA PAYGRALALL KREGRCPSDV EHRQIKYRNN VIECDHGKLK RIIGATLGFK SMKTAYATIK
GIEVMRALRK GQASAFYYGD PLGEMRLVSR VFEM
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| APH(3')-Ia (ARO:3002641) |
APH(3')-Ia |
Tn4352 |
816 |
2351-3166 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | APH(3') (ARO:3000126) |
| Comment: | strict match to reference sequence for ARO:3002641 (bitscore: 560)||Synonyms: aphA-1, apha1-1AB, APH(3')-Ic, apha7 |
Protein Sequence:
|
MSHIQRETSC SRPRLNSNMD ADLYGYKWAR DNVGQSGATI YRLYGKPDAP ELFLKHGKGS VANDVTDEMV RLNWLTEFMP LPTIKHFIRT PDDAWLLTTA
IPGKTAFQVL EEYPDSGENI VDALAVFLRR LHSIPVCNCP FNSDRVFRLA QAQSRMNNGL VDASDFDDER NGWPVEQVWK EMHKLLPFSP DSVVTHGDFS
LDNLIFDEGK LIGCIDVGRV GIADRYQDLA ILWNCLGEFS PSLQKRLFQK YGIDNPDMNK LQFHLMLDEF F
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
IS26 |
705 |
3317-4021 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MNPFKGRHFQ RDIILWAVRW YCKYGISYRE LQEMLAERGV NVDHSTIYRW VQRYAPEMEK RLRWYWRNPS DLCPWHMDET YVKVNGRWAY LYRAVDSRGR
TVDFYLSSRR NSKAAYRFLG KILNNVKKWQ IPRFINTDKA PAYGRALALL KREGRCPSDV EHRQIKYRNN VIECDHGKLK RIIGATLGFK SMKTAYATIK
GIEVMRALRK GQASAFYYGD PLGEMRLVSR VFEM
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniA 3' end |
TniA 3' end |
In_Tn1935 |
441 |
4069-4509 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
| Comment: | Contains the last 146 amino acids of tniA (In2)||probably truncated by insertion of IS26 |
Protein Sequence:
|
MPADALKPWI ARRERWPSFL IRRDPRDISR IWVLEPEGQH YLEIPYRTLS HPAVTLWEQR QALAKLRQQG REQVDESALF RMIGQMREIV TSAQKATRKA
RRDADRRQHL KTSARPDKPV PPDTDIADPQ ADNLPPAKPF DQIEEW
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniB delta1 |
TniB delta1 |
In_Tn1935 |
861 |
4512-5372 |
+ |
| Class: | Accessory Gene |
| Function: | probable ATP-binding protein. |
| Comment: | probably truncated by insertion of IS1326::IS1353 |
Protein Sequence:
|
MDEYPIIDLS HLLPAAQGLA RLPADERIQR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLVGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSPIAT LDMARYLLTR SEGTIGELAH LLMAAAIVAV ESGEEAINHR TLSMAC
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS1353 |
1545 |
5423-6967 |
- |
| Class: | Transposase |
| Function: | transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MYSYEDRLRA VRLYLKLGRR MSATLRQLGY PTKNSLKAWL AEFERNQDLR RGYQRIKRQY TDEQKQRAVD HYIEQGYCLS HTIRSLGYPS REALRAWIRD
LRPEFARTVV GSSAPTVARS RLEKQQAVIA LNLRVGSAKD VADTVGVSRP TLYNWQHRLL GKVPLKPMTK KKGDTSLEQR HEALLRELAE LESQNQRLRM
ENAILEKASE LIKKDMGINP LELTSREKTK VVDALRVTFP LANLLCGLKL ARSTYFYQRL RQTRPDKYTQ VREVIRTIFE DNYRCYGYRR IDSALRLGGM
RVSEKVVRRL MAQERLVVRT PRRRRFSAYA GDPTPAVPNL LNRDFHASAP NTKWLTDLTE IHIPAGKVYV SPIVDCFDGL VVAWNIGTSP DANLVNTMLD
HAVRTLRPGE HPVIHSDRGS HYRWPAWIRR TENAQLTRSM SKKGCSPDNA ACEGFFGRLK TELIYPRNWQ HVTLKDLMTR IDAYIHWYNE RRIKVSLGGR
SPIEYRHAVG LMSV
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| istA |
IstA |
IS1326_IS1353 |
1524 |
7090-8613 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MINVAILSAI RRWHFRDGAS IREIARRSGL SRNTVRKYLQ SKVVEPQYPA RDSVGKLSPF EPKLRQWLST EHKKTKKLRR NLRSMYRDLV ALGFTGSYDR
VCAFARQWKD SEQFKAQTSG KGCFIPLRFA CGEAFQFDWS EDFARIAGKQ VKLQIAQFKL AHSRAFVLRA YYQQKHEMLF DAHWHAFQIF GGIPKRGIYD
NMKTAVDSVG RGKERRVNQR FTAMVSHYLF DAQFCNPASG WEKGQIEKNV QDSRQRLWQG APDFQSLADL NVWLEHRCKA LWSELRHPEL DQTVQEAFAD
EQGELMALPN AFDAFVEQTK RVTSTCLVHH EGNRYSVPAS YANRAISLRI YADKLVMAAE GQHIAEHPRL FGSGHARRGH TQYDWHHYLS VLQKKPGALR
NGAPFAELPP AFKKLQSILL QRPGGDRDMV EILALVLHHD EGAVLSAVEL ALECGKPSKE HVLNLLGRLT EEPPPKPIPI PKGLRLTLEP QANVNRYDSL
RRAHDAA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| istB |
IstB |
IS1326_IS1353 |
786 |
8600-9385 |
+ |
| Class: | Accessory Gene |
| Sub Class: | ATPase Transposition Helper |
| Function: | stimulates transposition |
Protein Sequence:
|
MMQHEGHVRI LKSLKLFGMA HAIEELGNQN SPAFNQALPM LDSLIKAEVA EREVRSVNYQ LRVAKFPVYR DLVGFDFSQS LVNEATVKQL HRCDFMEQAQ
NVVLIGGPGT GKTHLATAIG TQAVMHLNRR VRFFSTVDLV NALEQEKSSG RQGQIANRLL YADLVILDEL GYLPFSQTGG ALLFHLLSKL YEKTSVILTT
NLSFSEWSRV FGDEKMTTAL LDRLTHHCHI LETGNESYRF KHSSTQNKQE EKQTRKLKIE T
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| GNAT_fam |
GNAT_fam |
In_Tn1935 |
501 |
9561-10061 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | Acetyltransf_1 (Pfam:PF00583) |
| Comment: | putative acetyltransferase ADU64769.1 |
Protein Sequence:
|
MDSEEPPNVR VACSGDIDEV VRLMHDAAAW MSAKGTPAWD VARIDRTFAE TFVLRSELLV ASCSDGIVGC CTLSAEDPEF WPDALKGEAA YLHKLAVRRT
HAGRGVSSAL IEACRHAART QGCAKLRLDC HPNLRGLYER LGFTHVDTFN PGWDPTFIAE RLELEI
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| sul1 (ARO:3000410) |
Sul1 |
In_Tn1935 |
840 |
10189-11028 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target replacement (ARO:0001002) |
| Transpoase Chemistry: | dihydropteroate synthase |
| Target: | sulfonamide antibiotic (ARO:3000282)||sulfone antibiotic (ARO:3003401) |
| Sequence Family: | sulfonamide resistant sul (ARO:3004238) |
| Comment: | perfect match to reference sequence for ARO:3000410 |
Protein Sequence:
|
MVTVFGILNL TEDSFFDESR RLDPAGAVTA AIEMLRVGSD VVDVGPAASH PDARPVSPAD EIRRIAPLLD ALSDQMHRVS IDSFQPETQR YALKRGVGYL
NDIQGFPDPA LYPDIAEADC RLVVMHSAQR DGIATRTGHL RPEDALDEIV RFFEARVSAL RRSGVAADRL ILDPGMGFFL SPAPETSLHV LSNLQKLKSA
LGLPLLVSVS RKSFLGATVG LPVKDLGPAS LAAELHAIGN GADYVRTHAP GDLRSAITFS ETLAKFRSRD ARDRGLDHA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| qacEdelta1 (ARO:3005010) |
QacEdelta1 |
In_Tn1935 |
348 |
11022-11369 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic efflux (ARO:0010000) |
| Target: | disinfecting agents and antiseptics (ARO:3005386) |
| Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
| Comment: | subunit of the qac multidrug efflux pump||perfect match to reference sequence for ARO:3005010 (bitscore:219) |
Protein Sequence:
|
MKGWLFLVIA IVGEVIATSA LKSSEGFTKL APSAVVIIGY GIAFYFLSLV LKSIPVGVAY AVWSGLGVVI ITAIAWLLHG QKLDAWGFVG MGLIIAAFLL
ARSPSWKSLR RPTPW
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| aadA (ARO:3002601) |
AadA |
In_Tn1935 |
792 |
11533-12324 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Transpoase Chemistry: | aminoglycoside nucleotidyltransferase |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | ANT(3'') (ARO:3004275) |
| Comment: | perfect match to reference sequence for ARO:3002601||Synonyms: aadA1-pm aadA, aadA1, aad(3'')(9) |
Protein Sequence:
|
MREVVIAEVS TQLSEVVGVI ERHLEPTLLA VHLYGSAVDG GLKPHSDIDL LVTVTVRLDE TTRRALINDL LETSASPGES EILRAVEVTI VVHDDIIPWR
YPAKRELQFG EWQRNDILAG IFEPATIDID LAILLTKARE HSVALVGPAA EELFDPVPEQ DLFEALNETL TLWNSPPDWA GDERNVVLTL SRIWYSAVTG
KIAPKDVAAD WAMERLPAQY QPVILEARQA YLGQEEDRLA SRADQLEEFV HYVKGEITKV VGK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| bla OXA-1 (ARO:3001396) |
Bla OXA-1 |
In_Tn1935 |
876 |
12437-13312 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | penam (ARO:3000008)||carbapenem (ARO:0000020)||cephalosporin (ARO:0000032) |
| Sequence Family: | OXA beta-lactamase (ARO:3000017) |
| Comment: | strict match to reference sequence for ARO:3001396 (bitscore: 564 )||Synonyms: |
Protein Sequence:
|
MLAVKIKPFT KPILIMKNTI HINFAIFLII ANIIYSSASA STDISTVASP LFEGTEGCFL LYDASTNAEI AQFNKAKCAT QMAPDSTFKI ALSLMAFDAE
IIDQKTIFKW DKTPKGMEIW NSNHTPKTWM QFSVVWVSQE ITQKIGLNKI KNYLKDFDYG NQDFSGDKER NNGLTEAWLE SSLKISPEEQ IQFLRKIINH
NLPVKNSAIE NTIENMYLQD LDNSTKLYGK TGAGFTANRT LQNGWFEGFI ISKSGHKYVF VSALTGNLGS NLTSSIKAKK NAITILNTLN L
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| intI1 |
IntI1 |
In_Tn1935 |
1014 |
13477-14490 |
+ |
| Class: | Integron Integrase |
| Sub Class: | Class 1 |
| Transpoase Chemistry: | Tyrosine |
| Sequence Family: | Class 1 Integron Tyrosine Integrase |
Protein Sequence:
|
MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVHW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGSKDRALML PESLAPSLRE QLSRARAWWL
KDQAEGRSGV ALPDALERKY PRAGHSWPWF WVFAQHTHST DPRSGVVRRH HMYDQTFQRA FKRAVEQAGI TKPATPHTLR HSFATALLRS GYDIRTVQDL
LGHSDVSTTM IYTHVLKVGG AGVRSPLDAL PPLTSER
|
|
| Internal Transposable Elements (TE) |
|
|
| TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
| Tn4352-M20306 |
Tn4352 |
Transposon |
1394-4073 |
2680 |
| IS26-MH257753 |
IS26 |
Insertion Sequence |
1394-2213 |
820 |
| IS26-MH257753 |
IS26 |
Insertion Sequence |
3254-4073 |
820 |
| IS1326_IS1353-AF071413 |
IS1326 |
Insertion Sequence |
5367-9452 |
4086 |
| IS1353-AF071413 |
IS1353 |
Insertion Sequence |
5395-7008 |
1614 |
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| repeat t1 |
In_Tn1935 |
9-27 |
TCAGAAGACG ACTGCACCA |
| repeat t2 |
In_Tn1935 |
49-67 |
AACACGTCGG TCGAGGACT |
| repeat t3 |
In_Tn1935 |
78-97 |
TCAGAAGTGA TCTGCACCAA |
| repeat t4 |
In_Tn1935 |
110-128 |
TCAATACTCG TGTGCACCA |
| IR |
IS26 |
1394-1407 |
GGCACTGTTG CAAA |
| IR |
IS26 |
2200-2213 |
AAACGTTGTC ACGG |
| IR |
IS26 |
3254-3267 |
GGCACTGTTG CAAA |
| IR |
IS26 |
4060-4073 |
AAACGTTGTC ACGG |
| IRR |
IS1353 |
5395-5407 |
TGGGGGTGCG GAC |
| IRL |
IS1353 |
6997-7008 |
CAGGCGTGGG GT |
| IRR |
IS1326_IS1353 |
9427-9452 |
CCCAGTTTAA ACCCACGTTT AGTTGT |
| repeat i4 |
In_Tn1935 |
14573-14591 |
AGGAGGGACG CAGGCGACT |
| repeat i3 |
In_Tn1935 |
14601-14619 |
CGTCGGGCAG CAACGGACT |
| repeat i2 |
In_Tn1935 |
14643-14661 |
ATCACGTCAG CCGAAGACT |
| IRi |
In_Tn1935 |
14660-14692 |
CTGCAAGTCA CGTCGGCAGA AGACTTTTGC TGT |
|
|
