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Sequence File (FASTA format)     



Transposon
Name: InS21
Family: Tn402        Group: Class 1
Evidence of Transposition: no
 Host     

Host Organism:Salmonella enterica subsp. enterica serovar Infantis Molecular Source:plasmid pS21
Place of Origin:Buenos Aires, Argentina Date of Isolation:2001

 Map     



 Terminal Inverted Repeats (IR)     


 Sequence     
DNA SequenceLength  10780 
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
CGACAACCTC TCGCGCAACC AAGACATCGC GGTCGGACTG CAAGTGATCT TGAAGCCACG GGCCCGTCCC ACCCCGACAT GGACCTCGAT GCCCGAACGG 100
ACGTTAGATT TCGAGTTCTA GGCGTTCTGC GATGAAGGTT GGATCCCAGC CGGGATTGAA AGTGTCGACG TGGGTGAATC CGAGCCGCTC GTATAGGCCA 200
CGCAGGTTCG GGTGGCAGTC GAGCCGCAGC TTGGCGCACC CCTGCGTTCG CGCGGCATGG CGGCAAGCCT CGATCAGCGC GGAGCTGACA CCCCGGCCCG 300
CATGTGTCCG TCGCACCGCG AGCTTGTGCA GATATGCGGC CTCCCCCTTG AGGGCGTCGG GCCAGAACTC GGGATCCTCG GCCGACAAGG TGCAACAGCC 400
GACGATGCCG TCGCTGCAAC TCGCGACTAG GAGCTCGGAT CTCAGGACGA AGGTCTCCGC GAATGTCCGG TCGATCCGCG CGACGTCCCA GGCGGGCGTT 500
CCCTTGGCGG ACATCCACGC CGCAGCGTCG TGCATCAGCC GCACAACCTC GTCGATATCA CCCGAGCAGG CGACCCGAAC GTTCGGAGGC TCCTCGCTGT 600
CCATTCGCTC CCCTGGCGCG GTATGAACCG CCGCCTCATA GTGCAGTTTG ATCCTGACGA GCCCAGCATG TCTGCGCCCA CCTTCGCGGA ACCTGACCAG 700
GGTCCGCTAG CGGGCGGCCG GAAGGTGAAT GCTAGGCATG ATCTAACCCT CGGTCTCTGG CGTCGCGACT GCGAAATTTC GCGAGGGTTT CCGAGAAGGT 800
GATTGCGCTT CGCAGATCTC CAGGCGCGTG GGTGCGGACG TAGTCAGCGC CATTGCCGAT CGCGTGAAGT TCCGCCGCAA GGCTCGCTGG ACCCAGATCC 900
TTTACAGGAA GGCCAACGGT GGCGCCCAAG AAGGATTTCC GCGACACCGA GACCAATAGC GGAAGCCCCA ACGCCGACTT CAGCTTTTGA AGGTTCGACA 1000
GCACGTGCAG CGATGTTTCC GGTGCGGGGC TCAAGAAAAA TCCCATCCCC GGATCGAGGA TGAGCCGGTC GGCAGCGACC CCGCTCCGTC GCAAGGCGGA 1100
AACCCGCGCC TCGAAGAACC GCACAATCTC GTCGAGCGCG TCTTCGGGTC GAAGGTGACC GGTGCGGGTG GCGATGCCAT CCCGCTGCGC TGAGTGCATA 1200
ACCACCAGCC TGCAGTCCGC CTCAGCAATA TCGGGATAGA GCGCAGGGTC AGGAAATCCT TGGATATCGT TCAGGTAGCC CACGCCGCGC TTGAGCGCAT 1300
AGCGCTGGGT TTCCGGTTGG AAGCTGTCGA TTGAAACACG GTGCATCTGA TCGGACAGGG CGTCTAAGAG CGGCGCAATA CGTCTGATCT CATCGGCCGG 1400
CGATACAGGC CTCGCGTCCG GATGGCTGGC GGCCGGTCCG ACATCCACGA CGTCTGATCC GACTCGCAGC ATTTCGATCG CCGCGGTGAC AGCGCCGGCG 1500
GGGTCTAGCC GCCGGCTCTC ATCGAAGAAG GAGTCCTCGG TGAGATTCAG AATGCCGAAC ACCGTCACCA TGGCGTCGGC CTCCGCAGCG ACTTCCACGA 1600
TGGGGATCGG GCGAGCAAAA AGGCAGCAAT TATGAGCCCC ATACCTACAA AGCCCCACGC ATCAAGCTTT TGCCCATGAA GCAACCAGGC AATGGCTGTA 1700
ATTATGACGA CGCCGAGTCC CGACCAGACT GCATAAGCAA CACCGACAGG GATGGATTTC AGAACCAGAG AAAGAAAATA AAATGCGATG CCATAACCGA 1800
TTATGACAAC GGCGGAAGGG GCAAGCTTAG TAAAGCCCTC GCTAGATTTT AATGCGGATG TTGCGATTAC TTCGCCAACT ATTGCGATAA CAAGAAAAAG 1900
CCAGCCTTTC ATGATATATC TCCCAATTTG TGTAGGGCTT ATTATGCACG GCGTATTGAT ATCAGCACCC ATTTTCTTCT CCGCCCGTCG CTTTGCGGCA 2000
TACACCGCAC GGATATCAAG ATGGCGCCCC CTGGCCAGAT GGTTACAATC TTCACCCGCA ATCAGTGCCC CCAGGACATC GAACTCGAGC GTTGACAGAG 2100
ATAGTCCATG AAAAAACGCA TCTCTCTGAT AGATAAATCT TTTCTTTAAT TTATCACCAG CAGACTTTAA ATTATCCTGT TGATAAATAA TCAAAAAAAT 2200
ATCTTTGTGA TGCTTATACC AGTAATTAGC CAATGGTCTG AGGTGCCTAT CGCAAACGAG AACTATCTTT AGTTTTGTTT CGTATAAATA GTCCAACCAT 2300
TTTTTGTCAG TAAAAAAACG CAGATAGCTA ATAGAGAAAT CAACAAAAAC ACACCCAAGA TACAGGTAGT GATATTGCTG TTTAAGGAGA CCCTCCATGA 2400
TACCGAGTGA GAAATAGCGA CTGGCTTCAG GCCAGGTACA AAAACAGTAT TCCTGACAAA ATGAAACCCG TAGAGAGGCA TTTGGCTTAA CTTCACAATG 2500
AGAAGGGCAG CTCATACAGG TAACTCTTGC AAAATTATTA TTGAGCGACT TCATTGTCCC CTCCTTATCC ATATTAGAAT AATTTCATTG AGGTAATTTA 2600
TTGTCAATAA GCTTTTAAGA TGGCTCTTAG TTCAACTATT AAAAATAAAT AAAATTCTTA AAGCATAAAA AACCATTAGA AAACAACCAT GCAGACAGAA 2700
AGGAGATACG GAAGGCCGAA ATTATTCCAG TGTAAAAAAA TAGGAATACT GCAAGTGTAA ATCAGATAAT TACAATAAAA ACAAACAACC TAATAATTAA 2800
ATGCCTTAAA CATTATTTAA AATAAAATAG TTTACATAAG AAATTGTTAT CTATTACCTT CCTGAAGCTA AGATATTTGG TCCAGAAAAA AGAGCGGAAT 2900
GATAGAAAGA GATGAGGGTT CGTTGCAAGA CAAGACTGAA GTTCAGGAGC ACATTTTTAA CGTAAATGGA GCGATACCTC GCTCCATTTA TTGCATCAGA 3000
AACCGTGGGT TACGATTTTC GCCGCCGCAG CCAGAATATC CCGACGGCTT TCCGCCTTCT GCTCCGGTTG GGTAAAGTAG GTCACCAGAA CCAGCGGTGC 3100
GTGGTTTTCC GGCCAGATAA CCGCGATATC GTTGGTGGTG CCATAATCTC CGCTGCCGGT TTTATCGCCC ACTACCCATG ATTTCGGCAG ACCCGCCCGA 3200
ATGCTCGCGC TACCGGTAGT ATTGCCCTTA AGCCACGTCA CCAACTGTGC CCGCTGAGTT TCCGCCAGCG CTTTACCCAG CGTCAGATTT TTCAGGGTCT 3300
GCGCCATCGC GAGCGGCGTG GTGGTATCAC GCGGGTCGCC TGGAATGGCG GTATTGAGCG TGGGCTCGGT TCTGTCCAGA CGGAAGGTCT CATCACCCAA 3400
CGAGCGAGCA AACGCCGTCA CTTTATCGGG ACCACCCAGA TGGGCAATCA GCTTATTCAT GGCAGTATTG TCGCTATACT GCAGCGCCGC TGCGCCAAGC 3500
TCAGCCAGCG TCATCGTGCC GTTAACGTGT TTCTCCGCAA TGGGATTGTA GTTAACCAGG TCGCTCTTCT TGATTTCAAC GCGCTGATTT AGCAGGTGCT 3600
TATCGCTCTC GCTCTGTTTA AGCACCGCCG CGGCCGCCAT CACCTTACTG GTACTGCACA TCGCAAAACG TTCATCGGCA CGGTAGAGAA TCTGCGAATT 3700
ATCGGCGGTG TTAATCAGCG CAACGCCAAG CCGACCTCCC GAACTTTTCT CCAGGGCTTC CAGCTGCTGT TGCACGCTGT TCGCCTGCGC ATGCAGCGTT 3800
GCGCTGCTAA ATAGCAGGGG TAGCGTCGCC ATCACCGTTA ACATTGAGCG GCGAATGCTC TGAGTCATCA TTAAAAATCC TCTATTAGTA TTATCCCTCG 3900
GCCTTCAAGT ATACATTGAA AAAACAAAAA GTAAAAACAA AACCTGCCAA TATCTCCACA ATTGAGCCTG GTCCATGTTT ACATCGCGGC GAAAAAGCAA 4000
AAGTCAGAGA TCGCTCACGA AAGGAGCAGC ACATTTTGCA GCAGCGGAAA AAAGGATGAG GGGTACGCAG GTACGGCAAA ATTTTTTGAC GTCTGTCGCA 4100
AAATTAGCCA TAAAATCAAT AGGGTTTAAA GGGCGAGGGG TATAGGAAGT ATAAACCACC TTTTTGCTCC TCATCCGAAG TATCTTACCT GAAATTCCCT 4200
CACTCGTTTA CCGCTCAAGC CCCAATTTTA ACTGCCGGTC CAGCCTAAAC CGCTCTAATA AGGTTCGATT TGGCGGTAAA ATCTCTAGCC TGATAGCTCG 4300
AGAGATACAA ACTGCCCCAC CGCCCCGTTT AAAAGTTGGC AGTGTTGAGC AGTGTTGGAT TTGGGGTCGT CAGTCAAAGA GACGACTCTG TGATGGATCG 4400
AACAGGCTGG GAGTCAGTGG CGGCGCTCGT TCTGGTGGCA GCTCACGCTG CTTGGCGGCA TTCGCCTTGG CTGTTTTCTG TTTCAGATGC TTGAGAATCT 4500
GCTCAATGAC CTTCGGATCT TCGATGCTGG CAATCACTTT GACGTGACCG CCGCAGTGTT CGCAGACTTC AATATCAATA TTGAAGACTC GCTTGAGGCG 4600
TTGCATCCAG GTCATGGCGC GGTGGCGCTC TGCAGGACTC TTGTCACGCC AGTTAGTATC GAGACCTTCC GATTTGTCGG GCTTCTTGCC CCGCTTGGCG 4700
GGTGTTACTT GAACTCGGTG TTTGCTGTTC GGTACAAAGA CGCCGTGGAA GCGTGTGAGG TTGACTCGCG GCTTAGGTAC CAACGCAGCG AGTTTGGCGA 4800
TGAAGTCCAG CGGCTCGAAG ATCACATGGG TGGTGCCATT GCGGTACGGA GTTTTGAGCT CGTAACGCAC CTGCCCATTG GCGGTTAATG CCAGACGTTT 4900
TTCTGAAACC GCTGGCCGAC TAATGTAGCG ACACAAGCGC TCAAGCTTAT CCCGCTGATG CGCTTCGGCC ATCACACCGG CGTGTAGCGA GAAACCAGCA 5000
TGGTTGGCTA CTCGACTGCT TGAGTCGGCT TTATCCTCAC GCCCTGGCAA GGTTTGCAGG GTGAAGACTT TGCGCCCTTG CTGGGGGCCG ACGGCAATGC 5100
GATACGTAAC CGAAGCACCA TGTAATTGAG TCAGCGTATC GTCTTCGCCC TCTTCCAGTG TCAACCACGT ATTCTCGGCA TCACGCTCCA AAATCCCACG 5200
CTTTTCCATG CAGCGAGCGA TGCGATGGCT GAGGGTGTGA GCGAGCGTAT TCAGCTCATC GTAAGTGGGT GCCTTGACAC GATGGAAGCG TTGCTTGCCA 5300
TAGTCATCTT CGGCATAGAC ACCATCGAGA AACAGCATGT GGTAGTGGAC ATTGAGATTT AGCGCGGAGC CAAAGCGTTG GATAAGAGTC ACTGAGCCAG 5400
TTTGTGCAGA GGCTTTGGTG TAACCGGCTT TTTTGATCAG ATGAGTTGAG AGTGTACGAT AGACGATACT CAAGACCTGG CCCATCAGCT GGGGATGGCG 5500
AGCCAGCAAA AAGCGTAGCT GGAAAGGAAA GCTGAGCACC CACTGGCGAA TGGGCTCCTT GGGGAAGACT TCGTCTATCA GCAGCGCCGC ACTCTCGGCC 5600
ATCCGGCGGG CACCGCAGCT AGGGCAAAAG CCGCGTCGTT TACAGCTGAA GGCGACCAGA CGCTCGTGAT GACAATCCTC GCAGCGAACC CGCATGAAAC 5700
CATACTCCAG ACGGCCACAT TGGAGGAGGT CGTTGAATTC TTGTTGGATG TAGCGAGGCA GGTGTTGACC TTGGGCTTCG AGCGAGGCTT TGAAGGCTGG 5800
GTAGTGCTGC TCAACCAGCT GGTAGAGCAG CGTCTGGTCG GGTTGGTGGC GTTCGTAACC GTTTGTTTGA GTGGGCGATT GACTCGCCGT GGCGTTCCTT 5900
GCCAGCGACA TGGGTATCCT CCGCTGATAC TGTGGTTATG TACAGTATCA GCGGCTTGCG TTCAGACGTC CAGTCTGGCC CTAGACATCG CTAAATGCTT 6000
AACCCGCAAT AGCCCTCACG AGTTGTTATC AGCCACTACC GGTTGAGCGA GAAGGTTTTG GGTTCAGGGT GCTATTGCTC CACCAATCAC AATACTGAAG 6100
CCCCAACTGT TATCAGTTGG GGCTTTTTCT TGTCTGTTTG CGGCGGTTGC GTTTTATCGG TAGTCGTCGA GCTCTGCACC ATCCCACATA AGAGCTTAAC 6200
GGTGCGATCT TCAACGCCAT CACACAAAAC TTTCTTTTTC ACGCACAGTC AACTTATTGG ATGTTTTATT AACAACCCAA AAGGAGATAT TTAGCGGGCG 6300
GCCGGAAGGT GAATGCTAGG CATGATCTAA CCCTCGGTCT CTGGCGTCGC GACTGCGAAA TTTCGCGAGG GTTTCCGAGA AGGTGATTGC GCTTCGCAGA 6400
TCTCCAGGCG CGTGGGTGCG GACGTAGTCA GCGCCATTGC CGATCGCGTG AAGTTCCGCC GCAAGGCTCG CTGGACCCAG ATCCTTTACA GGAAGGCCAA 6500
CGGTGGCGCC CAAGAAGGAT TTCCGCGACA CCGAGACCAA TAGCGGAAGC CCCAACGCCG ACTTCAGCTT TTGAAGGTTC GACAGCACGT GCAGCGATGT 6600
TTCCGGTGCG GGGCTCAAGA AAAATCCCAT CCCCGGATCG AGGATGAGCC GGTCGGCAGC GACCCCGCTC CGTCGCAAGG CGGAAACCCG CGCCTCGAAG 6700
AACCGCACAA TCTCGTCGAG CGCGTCTTCG GGTCGAAGGT GACCGGTGCG GGTGGCGATG CCATCCCGCT GCGCTGAGTG CATAACCACC AGCCTGCAGT 6800
CCGCCTCAGC AATATCGGGA TAGAGCGCAG GGTCAGGAAA TCCTTGGATA TCGTTCAGGT AGCCCACGCC GCGCTTGAGC GCATAGCGCT GGGTTTCCGG 6900
TTGGAAGCTG TCGATTGAAA CACGGTGCAT CTGATCGGAC AGGGCGTCTA AGAGCGGCGC AATACGTCTG ATCTCATCGG CCGGCGATAC AGGCCTCGCG 7000
TCCGGGTGGC TGGCGGCCGG TCCGACATCC ACGACGTCTG ATCCGACTCG CAGCATTTCG ATCGCCGCGG TGACAGCGCC GGCGGGGTCT AGCCGCCGGC 7100
TCTCATCGAA GAAGGAGTCC TCGGTGAGAT TCAGAATGCC GAACACCGTC ACCATGGCGT CGGCCTCCGC AGCGACTTCC ACGATGGGGA TCGGGCGAGC 7200
AAAAAGGCAG CAATTATGAG CCCCATACCT ACAAAGCCCC ACGCATCAAG CTTTTGCCCA TGAAGCAACC AGGCAATGGC TGTAATTATG ACGACGCCGA 7300
GTCCCGACCA GACTGCATAA GCAACACCGA CAGGGATGGA TTTCAGAACC AGAGAAAGAA AATAAAATGC GATGCCATAA CCGATTATGA CAACGGCGGA 7400
AGGGGCAAGC TTAGTAAAGC CCTCGCTAGA TTTTAATGCG GATGTTGCGA TTACTTCGCC AACTATTGCG ATAACAAGAA AAAGCCAGCC TTTCATGATA 7500
TATCTCCCAA TTTGTGTAGG GCTTATTATG CACGCTTAAA AATAATAAAA GCAGACTTGA CCTGATAGTT TGGCTGTGAG CAATTATGTG CTTAGTGCAT 7600
CTAACGGGCG AGGTAAGCCG ACCGCAGAAT GCGGGTCGGC TTGACCGAAA TGTTAGAGCC AGAAGCCAAA ACGGATAACC GTAACTTGGC GACGGGCGCT 7700
AACTGCGAAA GGGCACGGTG CCACCGAGGC GGCACAGCAC TACGAAAAAA ATAGCTGCTC GCGCTTGCTA CACAAGGGCC AGAGGCCAAA AAGACCACAA 7800
ACCAGCGTAA CGCCACCAGG CGAAGCCCAG AGAAACGGCA AACCCAGCGC TGCACAGCGT TTGAGAAACT GAATGCCGTT TGAATAAACA TGGGCGAAAT 7900
AAAGGAGGGT TTCAGTGGTA CCAACGTTGA AGTAACCGGC GCTGCGCGGT TTTATCGCGC AGCGTCCGAG TTGACTGCCG GGTTGGGCGG TAACGCTTCA 8000
ATAGAGCGAA GGATTGCCCG CACGATTGCC TCCCTCTTGA AAAGATCATC CATTCTGTTT GGCGTATCAA TATTCAGTGC GAAGAATACG GAGCCAGTCG 8100
GCCACTCAAC CCATCCTACC CACCAACCCA TACGGCCTTC CTAGCCCGTC TTTGCACGCA GTATCCAGTT GCGACCGGCT TCCACAATCA TGAGGTCCTT 8200
GACCAAGCGC TGATGTTCTA CCCGAAAGGG CAGCTCGTTA CGATAGAGCT TCCTGAGAAA TGCAATTTGC TCCTGCGCCG AGATTGCAAG GCTGCCTTCT 8300
ATCCAGTAAT CGCCATTACT TGTCGAAGGA TCGGCGTTGC CATAGTCGAT TTTCTTCAAA TAGCGCCGAG CTTTGTCATC ACCAATTTCC TTTGCAAATA 8400
GCTCATACAC CCAAACAGTA GAATTCCGCA TTGCTGATCG CAAATCTTGG TCTTGATTGT GGCCTGCAAA GCCCCTGTTA ACGCCGTCCC ATCGAAAAAT 8500
CTGGAACTCA TCACGAACAG CGCCTGCATC AAGTGCAAAA AGCGTATGAG GTATCTTGAA TGTCGATGCA GGCGAGTAGC GTTTCTTCGA TCGCACAGGA 8600
TCAAAAACCA ACATGGCACG ATCCGCTTGG CGTTCGTCTG CCACAACTAT CGTGCCTTTG GCTTGAAATT CGCTGAAAAA CTTCCTCCAG TCAGAACGTT 8700
CTAGCGTGCC TTCTTGCGCA TGCGCGAAAG TGGCAAGAGA AAAAATGGAG GAAAGTATCG CGAAGATTCG GATTGCCATT AACTTTTCCT TAATGCCCAA 8800
CGTTTGACAT GAGGGGCGGC CAAGGGCGCC AGCCCTTGGA CGTCCCCCTC GATGGAAGGG TTAGGCATCA CTGCGTGTTC GCTCGAATGC CTGGCGTGTT 8900
TGAACCATGT ACACGGCTGG ACCATCTGGG GTGGTTACGG TACCTTGCCT CTCAAACCCC GCTTTCTCGT AGCATCGGAT CGCTCGCAAG TTGCTCGGCG 9000
ACGGGTCCGT TTGGATCTTG GTGACCTCGG GATCATTGAA CAGCAACTCA ACCAGAGCTC GGACCAGCTT GGTTCCCAAG CCTTTGCCCA GTTGTGATGC 9100
ATTCGCCAGT AACTGGTCTA TTCCGCGTAC TCCTGGATCG GTTTCTTCTT CCCACCATCC GTCCCCGCTT CCAAGAGCAA CGTACGACTG GGCATACCCA 9200
ATCGGCTCTC CATTCAGCAT TGCAATGTAT GGAGTGACGG ACTCTTGCGC TAAAACGCTT GGCAAGTACT GTTCCTGTAC GTCAGCAAGT GTCGGGCGTG 9300
CTTCTTCTCC GCCCCACCAC TCGACGATAT GAGATCGATT TAGCCACTCA TAGAGCATCG CAAGGTCATG CTCAGTCATG AGGCGCAGTG TGACGGAATC 9400
GTTGCTGTTG GTCACGATGC TGTACTTTGT GATGCCTAAC TTTGTTTTAC TGCTGCGTAA CATCGTTGCT GCTCCATAAC ATCAAACATC GACCCACGGC 9500
GTAACGCGCT TGCTGCTTGG ATGCCCGAGG CATAGACTGT ACAAAAAAAC AGTCATAACA AGCCATGAAA ACCGCCACTG CGCCGTTACC ACCGCTGCGT 9600
TCGGTCAAGG TTCTGGACCA GTTGCGTGAG CGCATACGCT ACTTGCATTA CAGTTTACGA ACCGAACAGG CTTATGTCAA CTGGGTTCGT GCCTTCATCC 9700
GTTTCCACGG TGTGCGTCAC CCGGCAACCT TGGGCAGCAG CGAAGTCGAG GCATTTCTGT CCTGGCTGGC GAACGAGCGC AAGGTTTCGG TCTCCACGCA 9800
TCGTCAGGCA TTGGCGGCCT TGCTGTTCTT CTACGGCAAG GTGCTGTGCA CGGATCTGCC CTGGCTTCAG GAGATCGGAA GACCTCGGCC GTCGCGGCGC 9900
TTGCCGGTGG TGCTGACCCC GGATGAAGTG GTTCGCATCC TCGGTTTTCT GGAAGGCGAG CATCGTTTGT TCGCCCAGCT TCTGTATGGA ACGGGCATGC 10000
GGATCAGTGA GGGTTTGCAA CTGCGGGTCA AGGATCTGGA TTTCGATCAC GGCACGATCA TCGTGCGGGA GGGCAAGGGC TCCAAGGATC GGGCCTTGAT 10100
GTTACCCGAG AGCTTGGCAC CCAGCCTGCG CGAGCAGCTG TCGCGTGCAC GGGCATGGTG GCTGAAGGAC CAGGCCGAGG GCCGCAGCGG CGTTGCGCTT 10200
CCCGACGCCC TTGAGCGGAA GTATCCGCGC GCCGGGCATT CCTGGCCGTG GTTCTGGGTT TTTGCGCAGC ACACGCATTC GACCGATCCA CGGAGCGGTG 10300
TCGTGCGTCG CCATCACATG TATGACCAGA CCTTTCAGCG CGCCTTCAAA CGTGCCGTAG AACAAGCAGG CATCACGAAG CCCGCCACAC CGCACACCCT 10400
CCGCCACTCG TTCGCGACGG CCTTGCTCCG CAGCGGTTAC GACATTCGAA CCGTGCAGGA TCTGCTCGGC CATTCCGACG TCTCTACGAC GATGATTTAC 10500
ACGCATGTGC TGAAAGTTGG CGGTGCCGGA GTGAGCTCAC CGCTTGATGC GCTGCCGCCC CTCACTAGTG AGAGGTAGGG CAGCGCAAGT CAATCCTGGC 10600
GGATTCACTA CCCCTGCGCG AAGGCCATCG GTGCCGCATC GAACGGCCGG TTGCGGAAAG TCCTCCCTGC GTCCGCTGAT GGCCGGCAGC AGCCCGTCGT 10700
TGCCTGATGG ATCCAACCCC TCCGCTGCTA TAGTGCAGTC GGCTTCTGAC GTTCAGTGCA GCCGTCTTCT GAAAACGACA

 Recombination Sites     

Name Coordinates Gene Sequence
attC qacH_sul1 core 704-737 34 CCGCTAGCGG GCGGCCGGAA GGTGAATGCT AGGC
attC orfD core 7610-7657 48 GAGGTAAGCC GACCGCAGAA TGCGGGTCGG CTTGACCGAA ATGTTAGA
attC bla OXA-2 core 7926-7988 63 GTTGAAGTAA CCGGCGCTGC GCGGTTTTAT CGCGCAGCGT CCGAGTTGAC TGCCGGGTTG
GGC
attC AAC(6')-Ib core 8801-8866 66 CGTTTGACAT GAGGGGCGGC CAAGGGCGCC AGCCCTTGGA CGTCCCCCTC GATGGAAGGG
TTAGGC

 ORFs     
ORF Summary
Gene Name Associated TE Coordinates Class Sub Class Orientation
GNAT_fam InS21 104-604 Passenger Gene Antibiotic Resistance -
sul1 (ARO:3000410) InS21 732-1571 Passenger Gene Antibiotic Resistance -
ORF3-qacEdelta1 InS21 1565-2554 Passenger Gene Antibiotic Resistance -
bla CTX-M-2 (ARO:3001865) InS21 2996-3871 Passenger Gene Antibiotic Resistance -
tnp ISCR1 4370-5911 Transposase   -
sul1 (ARO:3000410) InS21 6316-7155 Passenger Gene Antibiotic Resistance -
qacEdelta1 (ARO:3005010) InS21 7149-7496 Passenger Gene Antibiotic Resistance -
orfD-AXL94324.1 InS21 7601-7891 Passenger Gene Hypothetical -
bla OXA-2 (ARO:3001397) InS21 7952-8779 Passenger Gene Antibiotic Resistance -
AAC(6')-Ib10 (ARO:3002581) InS21 8861-9415 Passenger Gene Antibiotic Resistance -
intI1 InS21 9565-10578 Integron Integrase Class 1 +

ORF Details
Gene Name Protein Name Associated TE Gene Length Coordinates Strand
GNAT_fam GNAT_fam InS21 501 104-604 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  Acetyltransf_1 (Pfam:PF00583)
Comment:   putative acetyltransferase ADU64769.1
Protein Sequence:  
 MDSEEPPNVR VACSGDIDEV VRLMHDAAAW MSAKGTPAWD VARIDRTFAE TFVLRSELLV ASCSDGIVGC CTLSAEDPEF WPDALKGEAA YLHKLAVRRT
HAGRGVSSAL IEACRHAART QGCAKLRLDC HPNLRGLYER LGFTHVDTFN PGWDPTFIAE RLELEI

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
sul1 (ARO:3000410) Sul1 InS21 840 732-1571 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target replacement (ARO:0001002)
Transpoase Chemistry:   dihydropteroate synthase
Target:   sulfonamide antibiotic (ARO:3000282)||sulfone antibiotic (ARO:3003401)
Sequence Family:  sulfonamide resistant sul (ARO:3004238)
Comment:   perfect match to reference sequence for ARO:3000410
Protein Sequence:  
 MVTVFGILNL TEDSFFDESR RLDPAGAVTA AIEMLRVGSD VVDVGPAASH PDARPVSPAD EIRRIAPLLD ALSDQMHRVS IDSFQPETQR YALKRGVGYL
NDIQGFPDPA LYPDIAEADC RLVVMHSAQR DGIATRTGHL RPEDALDEIV RFFEARVSAL RRSGVAADRL ILDPGMGFFL SPAPETSLHV LSNLQKLKSA
LGLPLLVSVS RKSFLGATVG LPVKDLGPAS LAAELHAIGN GADYVRTHAP GDLRSAITFS ETLAKFRSRD ARDRGLDHA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
ORF3-qacEdelta1 ORF3-qacEdelta1 InS21 990 1565-2554 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Protein Sequence:  
 MKSLNNNFAR VTCMSCPSHC EVKPNASLRV SFCQEYCFCT WPEASRYFSL GIMEGLLKQQ YHYLYLGCVF VDFSISYLRF FTDKKWLDYL YETKLKIVLV
CDRHLRPLAN YWYKHHKDIF LIIYQQDNLK SAGDKLKKRF IYQRDAFFHG LSLSTLEFDV LGALIAGEDC NHLARGRHLD IRAVYAAKRR AEKKMGADIN
TPCIISPTQI GRYIMKGWLF LVIAIVGEVI ATSALKSSEG FTKLAPSAVV IIGYGIAFYF LSLVLKSIPV GVAYAVWSGL GVVIITAIAW LLHGQKLDAW
GFVGMGLIIA AFLLARSPSW KSLRRPTPW

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
bla CTX-M-2 (ARO:3001865) Bla CTX-M-2 InS21 876 2996-3871 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Transpoase Chemistry:   antibiotic inactivation (ARO:0001004)
Target:   cephalosporin (ARO:0000032)
Sequence Family:  CTX-M beta-lactamase (ARO:3000016)
Comment:   strict match to reference sequence for ARO:3001865 (bitscore: 599)
Protein Sequence:  
 MMTQSIRRSM LTVMATLPLL FSSATLHAQA NSVQQQLEAL EKSSGGRLGV ALINTADNSQ ILYRADERFA MCSTSKVMAA AAVLKQSESD KHLLNQRVEI
KKSDLVNYNP IAEKHVNGTM TLAELGAAAL QYSDNTAMNK LIAHLGGPDK VTAFARSLGD ETFRLDRTEP TLNTAIPGDP RDTTTPLAMA QTLKNLTLGK
ALAETQRAQL VTWLKGNTTG SASIRAGLPK SWVVGDKTGS GDYGTTNDIA VIWPENHAPL VLVTYFTQPE QKAESRRDIL AAAAKIVTHG F

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnp Tnp ISCR1 1542 4370-5911 -
Class:   Transposase
Transpoase Chemistry:   HUH
Sequence Family:  IS91 tnp
Comment:   CR of ISCR1
Protein Sequence:  
 MSLARNATAS QSPTQTNGYE RHQPDQTLLY QLVEQHYPAF KASLEAQGQH LPRYIQQEFN DLLQCGRLEY GFMRVRCEDC HHERLVAFSC KRRGFCPSCG
ARRMAESAAL LIDEVFPKEP IRQWVLSFPF QLRFLLARHP QLMGQVLSIV YRTLSTHLIK KAGYTKASAQ TGSVTLIQRF GSALNLNVHY HMLFLDGVYA
EDDYGKQRFH RVKAPTYDEL NTLAHTLSHR IARCMEKRGI LERDAENTWL TLEEGEDDTL TQLHGASVTY RIAVGPQQGR KVFTLQTLPG REDKADSSSR
VANHAGFSLH AGVMAEAHQR DKLERLCRYI SRPAVSEKRL ALTANGQVRY ELKTPYRNGT THVIFEPLDF IAKLAALVPK PRVNLTRFHG VFVPNSKHRV
QVTPAKRGKK PDKSEGLDTN WRDKSPAERH RAMTWMQRLK RVFNIDIEVC EHCGGHVKVI ASIEDPKVIE QILKHLKQKT AKANAAKQRE LPPERAPPLT
PSLFDPSQSR LFD

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
sul1 (ARO:3000410) Sul1 InS21 840 6316-7155 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target replacement (ARO:0001002)
Transpoase Chemistry:   dihydropteroate synthase
Target:   sulfonamide antibiotic (ARO:3000282)||sulfone antibiotic (ARO:3003401)
Sequence Family:  sulfonamide resistant sul (ARO:3004238)
Comment:   perfect match to reference sequence for ARO:3000410
Protein Sequence:  
 MVTVFGILNL TEDSFFDESR RLDPAGAVTA AIEMLRVGSD VVDVGPAASH PDARPVSPAD EIRRIAPLLD ALSDQMHRVS IDSFQPETQR YALKRGVGYL
NDIQGFPDPA LYPDIAEADC RLVVMHSAQR DGIATRTGHL RPEDALDEIV RFFEARVSAL RRSGVAADRL ILDPGMGFFL SPAPETSLHV LSNLQKLKSA
LGLPLLVSVS RKSFLGATVG LPVKDLGPAS LAAELHAIGN GADYVRTHAP GDLRSAITFS ETLAKFRSRD ARDRGLDHA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
qacEdelta1 (ARO:3005010) QacEdelta1 InS21 348 7149-7496 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic efflux (ARO:0010000)
Target:   disinfecting agents and antiseptics (ARO:3005386)
Sequence Family:  major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002)
Comment:   subunit of the qac multidrug efflux pump||perfect match to reference sequence for ARO:3005010 (bitscore:219)
Protein Sequence:  
 MKGWLFLVIA IVGEVIATSA LKSSEGFTKL APSAVVIIGY GIAFYFLSLV LKSIPVGVAY AVWSGLGVVI ITAIAWLLHG QKLDAWGFVG MGLIIAAFLL
ARSPSWKSLR RPTPW

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
orfD-AXL94324.1 OrfD-AXL94324.1 InS21 291 7601-7891 -
Class:   Passenger Gene
Sub Class:   Hypothetical
Function:   unknown
Protein Sequence:  
 MFIQTAFSFS NAVQRWVCRF SGLRLVALRW FVVFLASGPC VASASSYFFR SAVPPRWHRA LSQLAPVAKL RLSVLASGSN ISVKPTRILR SAYLAR

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
bla OXA-2 (ARO:3001397) Bla OXA-2 InS21 828 7952-8779 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Transpoase Chemistry:   antibiotic inactivation (ARO:0001004)
Target:   cephalosporin (ARO:0000032)||penam (ARO:3000008)||carbapenem (ARO:0000020)
Sequence Family:  OXA beta-lactamase (ARO:3000017)
Comment:   strict match to reference sequence for ARO:3001397 (bitscore: 561)
Protein Sequence:  
 MAIRIFAILS SIFSLATFAH AQEGTLERSD WRKFFSEFQA KGTIVVADER QADRAMLVFD PVRSKKRYSP ASTFKIPHTL FALDAGAVRD EFQIFRWDGV
NRGFAGHNQD QDLRSAMRNS TVWVYELFAK EIGDDKARRY LKKIDYGNAD PSTSNGDYWI EGSLAISAQE QIAFLRKLYR NELPFRVEHQ RLVKDLMIVE
AGRNWILRAK TG*EGRMGWW VGWVEWPTGS VFFALNIDTP NRMDDLFKRE AIVRAILRSI EALPPNPAVN SDAAR

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
AAC(6')-Ib10 (ARO:3002581) AAC(6')-Ib10 InS21 555 8861-9415 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Transpoase Chemistry:   aminoglycoside acetyltransferase
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  AAC(6') (ARO:3000345)
Comment:   strict match to reference sequence for ARO:3002581 (bitscore: 377)
Protein Sequence:  
 MTNSNDSVTL RLMTEHDLAM LYEWLNRSHI VEWWGGEEAR PTLADVQEQY LPSVLAQESV TPYIAMLNGE PIGYAQSYVA LGSGDGWWEE ETDPGVRGID
QLLANASQLG KGLGTKLVRA LVELLFNDPE VTKIQTDPSP SNLRAIRCYE KAGFERQGTV TTPDGPAVYM VQTRQAFERT RSDA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
intI1 IntI1 InS21 1014 9565-10578 +
Class:   Integron Integrase
Sub Class:   Class 1
Transpoase Chemistry:   Tyrosine
Sequence Family:  Class 1 Integron Tyrosine Integrase
Protein Sequence:  
 MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVNW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGSKDRALML PESLAPSLRE QLSRARAWWL
KDQAEGRSGV ALPDALERKY PRAGHSWPWF WVFAQHTHST DPRSGVVRRH HMYDQTFQRA FKRAVEQAGI TKPATPHTLR HSFATALLRS GYDIRTVQDL
LGHSDVSTTM IYTHVLKVGG AGVSSPLDAL PPLTSER

 Internal Transposable Elements (TE)     

TnCentral Accession TE Name Type Coordinates Length
ISCR1-L06822 ISCR1 Insertion Sequence 4138-6291 2154

 Internal Repeat Elements     

Name Associated Mobile Element Coordinates Sequence (Top Strand)
repeat i3 InS21 10689-10707 CGTCGGGCAG CAACGGACT
repeat i2 InS21 10731-10749 ATCACGTCAG CCGAAGACT
IRi InS21 10748-10780 CTGCAAGTCA CGTCGGCAGA AGACTTTTGC TGT