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| Name: In6_p |
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| Family: Tn402 Group: Class 1 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Staphylococcus aureus | Molecular Source: | plasmid pSA |
| | Date of Isolation: | 1993 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
CAAGCAATAC GGTCGCAATC TGACCATCCG CAATTCTAGT GTAGAAGGAG AGTAGAAAAG TGAATGACCT CAAGAACATG AGCGCCGACG AGCTGCGTGC 100
ACAGCGTGCC CAGATCGACG CAGAACTCAA GAAACGAGAG GCCAAAGAGA GGCAGGAAGC CCGCAAGAAA ATTCTCGAAA TTGCCAACAC GCATGGAATA 200
AACATCGCCG AGCTTGCGAG CAAGGAACGT CAGTATCGTA ATCCTGACGA CCAATGGGAA ACATGGAACG GACGCGGGCG CAAGCCCAAA TGGGTCAAAG 300
AATGGCTCGC CAAGGGGCAC TCGCTCGAAG AACTGGAAGT ATCATGAATT GAAGATCGGG CCGTAAGGCC AGGAGGAACA CTATGGAACC CCACCGCACC 400
AACGTCATTA TTTTTCCGAA GGTGCGCGAA GTCGCAGAGG CGGCCGAGCG AGCCTGACAG GCCCGAAAAG CCCGGCACGG GCGTCGGCGG CGATGACGGC 500
GGCGGCATTA TCCAGGGTTG ATGATGGAAG TGGAGGATAT CGACAACCTC TCGCGCAACC AAGACATCGC GGTCGGACTG CAAGTGATCT TGAAGCCACG 600
GGCCCGTCCC ACCCCGACAT GGACCTCGAT GCCCGAACGG ACGTTAGATT TCGAGTTCTA GGCGTTCTGC GATGAAGGTT GGATCCCAGC CGGGATTGAA 700
AGTGTCGACG TGGGTGAATC CGAGCCGCTC GTATAGGCCA CGCAGGTTCG GGTGGCAGTC GAGCCGCAGC TTGGCGCACC CCTGCGTTCG CGCGGCATGG 800
CGGCAAGCCT CGATCAGCGC GGAGCTGACA CCCCGGCCCG CATGTGTCCG TCGCACCGCG AGCTTGTGCA GATATGCGGC CTCCCCCTTG AGGGCGTCGG 900
GCCAGAACTC GGGATCCTCG GCCGACAAGG TGCAACAGCC GACGATGCCG TCGCTGCAAC TCGCGACTAG GAGCTCGGAT CTCAGGACGA AGGTCTCCGC 1000
GAATGTCCGG TCGATCCGCG CGACGTCCCA GGCGGGCGTT CCCTTGGCGG ACATCCACGC CGCAGCGTCG TGCATCAGCC GCACAACCTC GTCGATATCA 1100
CCCGAGCAGG CGACCCGAAC GTTCGGAGGC TCCTCGCTGT CCATTCGCTC CCCTGGCGCG GTATGAACCG CCGCCTCATA GTGCAGTTTG ATCCTGACGA 1200
GCCCAGCATG TCTGCGCCCA CCTTCGCGGA ACCTGACCAG GGTCCGCTAG CGGGCGGCCG GAAGGTGAAT GCTAGGCATG ATCTAACCCT CGGTCTCTGG 1300
CGTCGCGACT GCGAAATTTC GCGAGGGTTT CCGAGAAGGT GATTGCGCTT CGCAGATCTC CAGGCGCGTG GGTGCGGACG TAGTCAGCGC CATTGCCGAT 1400
CGCGTGAAGT TCCGCCGCAA GGCTCGCTGG ACCCAGATCC TTTACAGGAA GGCCAACGGT GGCGCCCAAG AAGGATTTCC GCGACACCGA GACCAATAGC 1500
GGAAGCCCCA ACGCCGACTT CAGCTTTTGA AGGTTCGACA GCACGTGCAG CGATGTTTCC GGTGCGGGGC TCAAGAAAAA TCCCATCCCC GGATCGAGGA 1600
TGAGCCGGTC GGCAGCGACC CCGCTCCGTC GCAAGGCGGA AACCCGCGCC TCGAAGAACC GCACAATCTC GTCGAGCGCG TCTTCGGGTC GAAGGTGACC 1700
GGTGCGGGTG GCGATGCCAT CCCGCTGCGC TGAGTGCATA ACCACCAGCC TGCAGTCCGC CTCAGCAATA TCGGGATAGA GCGCAGGGTC AGGAAATCCT 1800
TGGATATCGT TCAGGTAGCC CACGCCGCGC TTGAGCGCAT AGCGCTGGGT TTCCGGTTGG AAGCTGTCGA TTGAAACACG GTGCATCTGA TCGGACAGGG 1900
CGTCTAAGAG CGGCGCAATA CGTCTGATCT CATCGGCCGG CGATACAGGC CTCGCGTCCG GATGGCTGGC GGCCGGTCCG ACATCCACGA CGTCTGATCC 2000
GACTCGCAGC ATTTCGATCG CCGCGGTGAC AGCGCCGGCG GGGTCTAGCC GCCGGCTCTC ATCGAAGAAG GAGTCCTCGG TGAGATTCAG AATGCCGAAC 2100
ACCGTCACCA TGGCGTCGGC CTCCGCAGCG ACTTCCACGA TGGGGATCGG GCGAGCAAAA AGGCAGCAAT TATGAGCCCC ATACCTACAA AGCCCCACGC 2200
ATCAAGCTTT TGCCCATGAA GCAACCAGGC AATGGCTGTA ATTATGACGA CGCCGAGTCC CGACCAGACT GCATAAGCAA CACCGACAGG GATGGATTTC 2300
AGAACCAGAG AACATGTCAT TGTACTGGAA GGCGCATTAC AACTGCGGCT GGGGGATGAG TGGCACACCG TTTCTGCCGG GGAATCCCTG CGCTTCCATG 2400
CGGATATCCC GCACGCTTAC GCCAATCCCG GTAAGGCCAT TGTGACACTG CATAATCTGA TCCATTATCC GCGCCCGGCG GACAAATAAA AAAGCAGGGT 2500
ATAATAAATA TACCCCGCTT TGACTTAACG GATCGTCTTA CTTTATTTGT AAAATAAAAC CAAAATAAAT ATGTGTTCAG CTTAACTTAT TATATATCAT 2600
CCTTATACCA ACCGGGATGA TATGTTTATA CTGAACAGAA AAGCATGCCA TTCAGAATAC TATCTTCTGT TATATATGGC GGTTTATTTA TTGTTTAATT 2700
ACACACACTC AGGCATATCA CTATGCTATC GTGATGTTTT CACTGGTGTT GTTACTACTG CCTTTACGGC ATTTTGGTGT TGTTCAAAAT GACTGTCGCA 2800
GCAGTCTTTC TGGTGTCTTA AATACTATTA TTATAACTGC ATCTGGTGTT GTTAATATTA TTGTTACTGC TTACTTTATT ATTATTGCTG TCAGTCTTTG 2900
CTGTTTCTTT TTTATTAAGG GTATTACCAA ACTGCGGGGG CATTATCGTA CAGTGATCCT GAACCAGTCT GAAACGAAAT TACAGATTAC GGTTAAAATA 3000
TAAAAAAAAG CCACCATTCC TGCCGGATAC GGTGGCTTAA ATACAGAATT AATTAATTTA TTTCAGTATG TTATCACACA TCAGCTGAAG TGTATTAATA 3100
AACCGTGCTG CATGAAAGCC ATCACAGACT GCATGATGAA CCTGTACAGA AACAGGTAAT AATACGCGGT CACCTTCCTG CTGAAACTTT GCCATCGTAA 3200
AAACCGGGGC AAAATAATCA TCATTTCCGG TGATGTTCAG GTTAAATCCG TCAAAACTCA CCCACGGTAA TGATGATATA TTCAGGTGAT TCTCCGGTAA 3300
ATTTCCCTGC GGAAACAATC TGGTATCATG CTGATATTCT GCCGTTACCG CATTATAACC TGCCATAAAC TCACTGAGAT CCGGAAAATA ACGGCAGGAC 3400
AGTGCAGAGA ATGTTTCGGT TTCTTTATGA AAGACAGTAA AGACCGGGTC TGACTGGTCC CAGTAAATAA GTTCATTGTC TTTCAGTGCC ATCCGGAACT 3500
CCGGAAACTG ATTAACAGCC CGGGAGATCA GGTAAATCAT CAGCGGATAA AACTTATAAC CTGTCTCCGC CAGTGCGGTA CGCAAAGCGG TAATATCGAG 3600
TTTGGTGGTC AGGCTGAATC CGCATTTAAT CTGCTGACGA TAAAGGGCAA AGTGTTCCCT GCGATTCCAG GTATTCAGGT CAATCCGGGT AAAATTCATG 3700
GTTATTCCTT CTGATTAATA GTGAAAAATA TTAATAATCA GAAGGCAGTC TGGTTGTCTC AATGGGTAAC ATTCCGTCCT CCGTAAGCTG TTTGGTATTC 3800
AGTAATAATA CCCTATACGG GCTTAATCTG TATTAAGCCC GGCTTTATTT ATTCCGGCCA ATCATCCGCA AACACATAGC GGATCAGTTC TGCGGATTCA 3900
CGGGGCGGTG CTCTCAGCAC ATCCGCCATT AAATCAATCT CCATCTGACA GGTTTGCAGC TTGTCTTCCG CCGGTACATA CGGATCATCC GTCAGGAAAC 4000
TATCGCCGTA TTTATCCATC GACCCCTGTA TTTGTGCCGA AAATAAAGTC ACGGTACTCT CCGGAGGCCT TTTTCATATC CGGCGGGCCT GACACTTCCG 4100
GATGCAGCAC ACGAAAACAG AAGTCACCGG AACACGCCAT TCTGAGAAAA CTGTCACTAA TCTGTTTTAT TCCGCAAACA GAAAACCACC GGATAACCGG 4200
GGTATAGGAA GTATAAACCA CCTTTTTGGG TATAGGAAGT ATAAACCACC TTTTTGCTCC TCATCCGAAG TATCTTACCT GAAATTCCCT CACTCGTTTA 4300
CCGCTCAAGC CCCAATTTTA ACTGCCGGTC CAGCCTAAAC CGCTCTAATA AGGTTCGATT TGGCGGTAAA ATCTCTAGCC TGATAGCTCG AGAGATACAA 4400
ACTGCCCCAC CGCCCCGTTT AAAAGTTGGC AGTGTTGAGC AGTGTTGGAT TTGGGGTCGT CAGTCAAAGA GACGACTCTG TGATGGATCG AACAGGCTGG 4500
GAGTCAGTGG CGGCGCTCGT TCTGGTGGCA GCTCACGCTG CTTGGCGGCA TTCGCCTTGG CTGTTTTCTG TTTCAGATGC TTGAGAATCT GCTCAATGAC 4600
CTTCGGATCT TCGATGCTGG CAAGGGTATA GGAAGTATAA ACCACCTTTT TGCTCCTCAT CCGAAGTATC TTACCTGAAA TTCCCTCACT CGTTTACCGC 4700
TCAAGCCCCA ATTTTAACTG CCGGTCCAGC CTAAACCGCT CTAATAAGGT TCGATTTGGC GGTAAAATCT CTAGCCTGAT AGCTCGAGAG ATACAAACTG 4800
CCCCACCGCC CCGTTTAAAA GTTGGCAGTG TTGAGCAGTG TTGGATTTGG GGTCGTCAGT CAAAGAGACG ACTCTGTGAT GGATCGAACA GGCTGGGAGT 4900
CAGTGGCGGC GCTCGTTCTG GTGGCAGCTC ACGCTGCTTG GCGGCATTCG CCTTGGCTGT TTTCTGTTTC AGATGCTTGA GAATCTGCTC AATGACCTTC 5000
GGATCTTCGA TGCTGGCAAT CACTTTGACG TGACCGCCGC AGTGTTCGCA GACTTCAATA TCAATATTGA AGACTCGCTT GAGGCGTTGC ATCCAGGTCA 5100
TGGCGCGGTG GCGCTCTGCA GGACTCTTGT CACGCCAGTT AGTATCGAGA CCTTCCGATT TGTCGGGCTT CTTGCCCCGC TTGGCGGGTG TTACTTGAAC 5200
TCGGTGTTTG CTGTTCGGTG CAAAGACGCC GTGGAAGCGT GTGAGGTTGA CTCGCGGCTT AGGTACCAAC GCAGCGAGTT TGGCGATGAA GTCCAGCGGC 5300
TCGAAGATCA CATGGGTGGT GCCATTGCGG TACGGAGTTT TGAGCTCGTA ACGCACCTGC CCATTGGCGG TTAATGCCAG ACGTTTTTCT GAAACCGCTG 5400
GCCGACTAAT GTAGCGACAC AAGCGCTCAA GCTTATCCCG CTGATGCGCT TCGGCCATCA CACCGGCGTG TAGCGAGAAA CCAGCATGGT TGGCTACTCG 5500
ACTGCTTGAG TCGGCTTTAT CCTCACGCCC TGGCAAGGTT TGCAGGGTGA AGACTTTGCG CCCTTGCTGG GGGCCGACGG CAATGCGATA CGTAACCGAA 5600
GCACCATGTA ATTGAGTCAG CGTATCGTCT TCGCCCTCTT CCAGTGTCAA CCACGTATTC TCGGCATCAC GCTCCAAAAT CCCACGCTTT TCCATGCAGC 5700
GAGCGATGCG ATGGCTGAGG GTGTGAGCGA GCGTATTCAG CTCATCGTAA GTGGGTGCCT TGACACGATG GAAGCGTTGC TTGCCATAGT CATCTTCGGC 5800
ATAGACACCA TCGAGAAACA GCATGTGGTA GTGGACATTG AGATTTAGCG CGGAGCCAAA GCGTTGGATA AGAGTCACTG AGCCAGTTTG TGCAGAGGCT 5900
TTGGTGTAAC CGGCTTTTTT GATCAGATGA GTTGAGAGTG TACGATAGAC GATACTCAAG ACCTGGCCCA TCAGCTGGGG ATGGCGAGCC AGCAAAAAGC 6000
GTAGCTGGAA AGGAAAGCTG AGCACCCACT GGCGAATGGG CTCCTTGGGG AAGACTTCGT CTATCAGCAG CGCCGCACTC TCGGCCATCC GGCGGGCACC 6100
GCAGCTAGGG CAAAAGCCGC GTCGTTTACA GCTGAAGGCG ACCAGACGCT CGTGATGACA ATCCTCGCAG CGAACCCGCA TGAAACCATA CTCCAGACGG 6200
CCACATTGGA GGAGGTCGTT GAATTCTTGT TGGATGTAGC GAGGCAGGTG TTGACCTTGG GCTTCGAGTG AGGCTTTGAA GGCTGGGTAG TGCTGCTCAA 6300
CCAGCTGGTA GAGCAGCGTC TGGTCGGGTT GGTGGCGTTC GTAACCGTTT GTTTGAGTGG GCGATTGACT CGCCGTGGCG TTCCTTGCCA GCGACATGGG 6400
TATCCTCCGC TGATACTGTG GTTATGTACA GTATCAGCGG CTTGCGTTCA GACGTCCAGT CTGGCCCTAG ACATCGCTAA ATGCTTAACC CGCAATAGCC 6500
CTCACGAGTT GTTATCAGCC ACTACCGGTT GAGCGAGAAG GTTTTGGGTT CAGGGTGCTA TTGCTCCACC AATCACAATA CTGAAGCCCC AACTGTTATC 6600
AGTTGGGGCT TTTTCTTGTC TGTTTGCGGC GGTTGCGTTT TATCGGTAGT CGTCGAGCTC TGCACCATCC CACATAAGAG CTTAACGGTG CGATCTTCAA 6700
CGCCATCACA CAAAACTTTC TTTTTCACGC ACAGTCAACT TATTGGATGT TTTATTAACA ACCCAAAAGG AGATATTTAG CGGGCGGCCG GAAGGTGAAT 6800
GCTAGGCATG ATCTAACCCT CGGTCTCTGG CGTCGCGACT GCGAAATTTC GCGAGGGTTT CCGAGAAGGT GATTGCGCTT CGCAGATCTC CAGGCGCGTG 6900
GGTGCGGACG TAGTCAGCGC CATTGCCGAT CGCGTGAAGT TCCGCCGCAA GGCTCGCTGG ACCCAGATCC TTTACAGGAA GGCCAACGGT GGCGCCCAAG 7000
AAGGATTTCC GCGACACCGA GACCAATAGC GGAAGCCCCA ACGCCGACTT CAGCTTTTGA AGGTTCGACA GCACGTGCAG CGATGTTTCC GGTGCGGGGC 7100
TCAAGAAAAA TCCCATCCCC GGATCGAGGA TGAGCCGGTC GGCAGCGACC CCGCTCCGTC GCAAGGCGGA AACCCGCGCC TCGAAGAACC GCACAATCTC 7200
GTCGAGCGCG TCTTCGGGTC GAAGGTGACC GGTGCGGGTG GCGATGCCAT CCCGCTGCGC TGAGTGCATA ACCACCAGCC TGCAGTCCGC CTCAGCAATA 7300
TCGGGATAGA GCGCAGGGTC AGGAAATCCT TGGATATCGT TCAGGTAGCC CACGCCGCGC TTGAGCGCAT AGCGCTGGGT TTCCGGTTGG AAGCTGTCGA 7400
TTGAAACACG GTGCATCTGA TCGGACAGGG CGTCTAAGAG CGGCGCAATA CGTCTGATCT CATCGGCCGG CGATACAGGC CTCGCGTCCG GATGGCTGGC 7500
GGCCGGTCCG ACATCCACGA CGTCTGATCC GACTCGCAGC ATTTCGATCG CCGCGGTGAC AGCGCCGGCG GGGTCTAGCC GCCGGCTCTC ATCGAAGAAG 7600
GAGTCCTCGG TGAGATTCAG AATGCCGAAC ACCGTCACCA TGGCGTCGGC CTCCGCAGCG ACTTCCACGA TGGGGATCGG GCGAGCAAAA AGGCAGCAAT 7700
TATGAGCCCC ATACCTACAA AGCCCCACGC ATCAAGCTTT TGCCCATGAA GCAACCAGGC AATGGCTGTA ATTATGACGA CGCCGAGTCC CGACCAGACT 7800
GCATAAGCAA CACCGACAGG GATGGATTTC AGAACCAGAG AAAGAAAATA AAATGCGATG CCATAACCGA TTATGACAAC GGCGGAAGGG GCAAGCTTAG 7900
TAAAGCCCTC GCTAGATTTT AATGCGGATG TTGCGATTAC TTCGCCAACT ATTGCGATAA CAAGAAAAAG CCAGCCTTTC ATGATATATC TCCCAATTTG 8000
TGTAGGGCTT ATTATGCACG CTTAAAAATA ATAAAAGCAG ACTTGACCTG ATAGTTTGGC TGTGAGCAAT TATGTGCTTA GTGCATCTAA CGCCGGAGTT 8100
AAGCCGCCGC GCGTAGCGCG GTCGGCTTGA ACGAATTGTT AGACATCATT TACCAACTGA CTTGATGATC TCGCCTTTCA CAAAGCGAAT AAATTCTTCC 8200
AAGTGATCTG CGCGTGAGGC CAAGTGATCT TCTTTTTGTC CCAGATAAGC TTGCTTAGCT TCAAGTAAGA CGGGCTGATA CTGGGCAGGT AGGCGTTTTA 8300
TTGCCCAGTC GGCAGCGACA TCCTTCGGCG CGATTTTGCC GGTTATTGCG CTGTACCAAA TGCGGGACAA CGTAAGCACT ACATTTCGCT CATCGCCGGC 8400
CCAGTCGGGC TGCGAGTTCC ATAGCTTCAA GGTTTCCCTC AGCGCCTCGA ATAGATCCTG TTCAGGAACC GGGTCAAAGA ATTCCTCCGC TGCCGGACCT 8500
ACCAAGGCAA CGCTATGTTC TCTTGCTTTT GTAAGCAGGA TAGCTAGATC AATGTCGATC ATGGCTGGCT CGAAGATACC CGCAAGAATG TCATTGCGCT 8600
GCCATTCTCC AAATTGCAGC TCGCGCTTAG CCGGATAACG CCACGGGATG ATGTCGTCAT GCACGACAAG GGTGACTTCT ATAGCGCGGA GCGTCTCGCT 8700
CTCGCCAGGG AAAGCCGAAG CCTCCATAAG GTCATTGAGC AATGCTCGCC GCGTCGTTTC ATCAAGCTTT ACGGCCACAG TAACCAACAA ATCAATATCG 8800
CTGTATGGCT TCAGGCCGCC ATCCACTGCG GAGCCGTACA AATGCACGGC CAGCAACGTT GATTCCAGAT GGCGCTCAAT GACGCTTAGC ACCTCTGATA 8900
GTTGGTTCGA AATTTCGATG GTCACCGCTA CCCTCATGAT GTCTAACGTT TGACATGAGG GGCGGCCAAG GGCGCCAGCC CTTGGACGTC CCCCTCGATG 9000
GAAGGGTTAG GCATCACTGC GTGTTCGCTC GAATGCCTGG CGTGTTTGAA CCATGTACAC GGCTGGACCA TCTGGGGTGG TTACGGTACC TTGCCTCTCA 9100
AACCCCGCTT TCTCGTAGCA TCGGATCGCT CGCAAGTTGC TCGGCGACGG GTCCGTTTGG ATCTTGGTGA CCTCGGGATC ATTGAACAGC AACTCAACCA 9200
GAGCTCGAAC CAGCTTGGTT CCCAAGCCTT TGCCCAGTTG TGATGCATTC GCCAGTGACT GGTCTATTCC GCGTACTCCT GGATCGGTTT CTTCTTCCCA 9300
CCATCCGTCC CCGCTTCCAA GAGCAACGTA CGACTGGGCA TACCCAATCG GCTCTCCATT CAGCATTGCA ATGTATGGAG TGACGGACTC TTGCGCTAAA 9400
ACGCTTGGCA AGTACTGTTC CTGTACGTCA GCAAGTGTCG GGCGTGCTTC TTCTCCGCCC CACCACTCGA CGATATGAGA TCGATTTAGC CACTCATAGA 9500
GCATCGCAAG GTCATGCTCA GTCATGAGGC GCAGTGTGAC GGAATCGGTG CTGTTGGTCA CGATGCTGTA CTTTGTGATG CCTAACTTTG TTTTAGGGCG 9600
ACTGCCCTGC TGCGTAACAT CGTTGCTGCT CCATAACATC AAACATCGAC CCACGGCGTA ACGCGCTTGC TGCTTGGATG CCCGAGGCAT AGACTGTACA 9700
AAAAAACAGT CATAACAAGC CATGAAAACC GCCACTGCGC CGTTACCACC GCTGCGTTCG GTCAAGGTTC TGGACCAGTT GCGTGAGCGC ATACGCTACT 9800
TGCATTACAG TTTACGAACC GAACAGGCTT ATGTCAACTG GGTTCGTGCC TTCATCCGTT TCCACGGTGT GCGTCACCCG GCAACCTTGG GCAGCAGCGA 9900
AGTCGAGGCA TTTCTGTCCT GGCTGGCGAA CGAGCGCAAG GTTTCGGTCT CCACGCATCG TCAGGCATTG GCGGCCTTGC TGTTCTTCTA CGGCAAGGTG 10000
CTGTGCACGG ATCTGCCCTG GCTTCAGGAG ATCGGAAGAC CTCGGCCGTC GCGGCGCTTG CCGGTGGTGC TGACCCCGGA TGAAGTGGTT CGCATCCTCG 10100
GTTTTCTGGA AGGCGAGCAT CGTTTGTTCG CCCAGCTTCT GTATGGAACG GGCATGCGGA TCAGTGAGGG TTTGCAACTG CGGGTCAAGG ATCTGGATTT 10200
CGATCACGGC ACGATCATCG TGCGGGAGGG CAAGGGCTCC AAGGATCGGG CCTTGATGTT ACCCGAGAGC TTGGCACCCA GCCTGCGCGA GCAGCTGTCG 10300
CGTGCACGGG CATGGTGGCT GAAGGACCAG GCCGAGGGCC GCAGCGGCGT TGCGCTTCCC GACGCCCTTG AGCGGAAGTA TCCGCGCGCC GGGCATTCCT 10400
GGCCGTGGTT CTGGGTTTTT GCGCAGCACA CGCATTCGAC CGATCCACGG AGCGGTGTCG TGCGTCGCCA TCACATGTAT GACCAGACCT TTCAGCGCGC 10500
CTTCAAACGT GCCGTAGAAC AAGCAGGCAT CACGAAGCCC GCCACACCGC ACACCCTCCG CCACTCGTTC GCGACGGCCT TGCTCCGCAG CGGTTACGAC 10600
ATTCGAACCG TGCAGGATCT GCTCGGCCAT TCCGACGTCT CTACGACGAT GATTTACACG CATGTGCTGA AAGTTGGCGG TGCCGGAGTG CGCTCACCGC 10700
TTGATGCGCT GCCGCCCCTC ACTAGTGAGA GGTAGGGCAG CGCAAGTCAA TCCTGGCGGA TTCACTACCC CTGCGCGAAG GCCATCGGTG CCGCATCGAA 10800
CGGCCGGTTG CGGAAAGTCC TCCCTGCGTC CGCTGATGGC CGGCAGCAGC CCGTCGTTGC CTGATGGATC CAACCCCTCC GCTGCTATAG TGCAGTCGGC 10900
TTCTGACGTT CAGTGCAGCC GTCTTCTGAA AACGACATCT GGTGTTCCTC ATT
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| attC qacH_sul1 core |
1244-1277 |
34 |
CCGCTAGCGG GCGGCCGGAA GGTGAATGCT AGGC |
| attC aadA3 core |
8091-8144 |
54 |
CGCCGGAGTT AAGCCGCCGC GCGTAGCGCG GTCGGCTTGA ACGAATTGTT AGAC |
| attC AAC(6')-Ib core |
8947-9012 |
66 |
CGTTTGACAT GAGGGGCGGC CAAGGGCGCC AGCCCTTGGA CGTCCCCCTC GATGGAAGGG
TTAGGC |
| attI |
9586-9641 |
56 |
CTTTGTTTTA GGGCGACTGC CCTGCTGCGT AACATCGTTG CTGCTCCATA ACATCA |
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| ORFs |
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| GNAT_fam |
GNAT_fam |
In6_p |
501 |
644-1144 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | Acetyltransf_1 (Pfam:PF00583) |
| Comment: | putative acetyltransferase ADU64769.1 |
Protein Sequence:
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MDSEEPPNVR VACSGDIDEV VRLMHDAAAW MSAKGTPAWD VARIDRTFAE TFVLRSELLV ASCSDGIVGC CTLSAEDPEF WPDALKGEAA YLHKLAVRRT
HAGRGVSSAL IEACRHAART QGCAKLRLDC HPNLRGLYER LGFTHVDTFN PGWDPTFIAE RLELEI
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| sul1 (ARO:3000410) |
Sul1 |
In6_p |
840 |
1272-2111 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target replacement (ARO:0001002) |
| Transpoase Chemistry: | dihydropteroate synthase |
| Target: | sulfonamide antibiotic (ARO:3000282)||sulfone antibiotic (ARO:3003401) |
| Sequence Family: | sulfonamide resistant sul (ARO:3004238) |
| Comment: | perfect match to reference sequence for ARO:3000410 |
Protein Sequence:
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MVTVFGILNL TEDSFFDESR RLDPAGAVTA AIEMLRVGSD VVDVGPAASH PDARPVSPAD EIRRIAPLLD ALSDQMHRVS IDSFQPETQR YALKRGVGYL
NDIQGFPDPA LYPDIAEADC RLVVMHSAQR DGIATRTGHL RPEDALDEIV RFFEARVSAL RRSGVAADRL ILDPGMGFFL SPAPETSLHV LSNLQKLKSA
LGLPLLVSVS RKSFLGATVG LPVKDLGPAS LAAELHAIGN GADYVRTHAP GDLRSAITFS ETLAKFRSRD ARDRGLDHA
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| qacEdelta1_p (ARO:3005010) |
N |
In6_p |
208 |
2105-2312 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic efflux (ARO:0010000) |
| Transpoase Chemistry: | antibiotic efflux (ARO:0010000) |
| Target: | disinfecting agents and antiseptics (ARO:3005386) |
| Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
| Comment: | perfect match C-temrinal 68 amino acis of reference sequence for ARO:3005010 (bitscore: 133) |
Protein Sequence:
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SLVLKSIPVG VAYAVWSGLG VVIITAIAWL LHGQKLDAWG FVGMGLIIAA FLLARSPSWK SLRRPTPW
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| catII (ARO:3002684) |
CatII |
In6_p |
642 |
3058-3699 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Transpoase Chemistry: | antibiotic inactivation (ARO:0001004) |
| Target: | phenicol antibiotic (ARO:3000387) |
| Sequence Family: | chloramphenicol acetyltransferase (CAT) (ARO:3000122) |
| Comment: | perfect match to reference sequence from Escherichia cili for ARO:3004656 (bitscore: 449) |
Protein Sequence:
|
MNFTRIDLNT WNRREHFALY RQQIKCGFSL TTKLDITALR TALAETGYKF YPLMIYLISR AVNQFPEFRM ALKDNELIYW DQSDPVFTVF HKETETFSAL
SCRYFPDLSE FMAGYNAVTA EYQHDTRLFP QGNLPENHLN ISSLPWVSFD GFNLNITGND DYFAPVFTMA KFQQEGDRVL LPVSVQVHHA VCDGFHAARF
INTLQLMCDN ILK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
ISCR1 |
1542 |
4856-6397 |
- |
| Class: | Transposase |
| Transpoase Chemistry: | HUH |
| Sequence Family: | IS91 tnp |
| Comment: | CR of ISCR1 |
Protein Sequence:
|
MSLARNATAS QSPTQTNGYE RHQPDQTLLY QLVEQHYPAF KASLEAQGQH LPRYIQQEFN DLLQCGRLEY GFMRVRCEDC HHERLVAFSC KRRGFCPSCG
ARRMAESAAL LIDEVFPKEP IRQWVLSFPF QLRFLLARHP QLMGQVLSIV YRTLSTHLIK KAGYTKASAQ TGSVTLIQRF GSALNLNVHY HMLFLDGVYA
EDDYGKQRFH RVKAPTYDEL NTLAHTLSHR IARCMEKRGI LERDAENTWL TLEEGEDDTL TQLHGASVTY RIAVGPQQGR KVFTLQTLPG REDKADSSSR
VANHAGFSLH AGVMAEAHQR DKLERLCRYI SRPAVSEKRL ALTANGQVRY ELKTPYRNGT THVIFEPLDF IAKLAALVPK PRVNLTRFHG VFAPNSKHRV
QVTPAKRGKK PDKSEGLDTN WRDKSPAERH RAMTWMQRLK RVFNIDIEVC EHCGGHVKVI ASIEDPKVIE QILKHLKQKT AKANAAKQRE LPPERAPPLT
PSLFDPSQSR LFD
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| sul1 (ARO:3000410) |
Sul1 |
In6_p |
840 |
6802-7641 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target replacement (ARO:0001002) |
| Transpoase Chemistry: | dihydropteroate synthase |
| Target: | sulfonamide antibiotic (ARO:3000282)||sulfone antibiotic (ARO:3003401) |
| Sequence Family: | sulfonamide resistant sul (ARO:3004238) |
| Comment: | perfect match to reference sequence for ARO:3000410 |
Protein Sequence:
|
MVTVFGILNL TEDSFFDESR RLDPAGAVTA AIEMLRVGSD VVDVGPAASH PDARPVSPAD EIRRIAPLLD ALSDQMHRVS IDSFQPETQR YALKRGVGYL
NDIQGFPDPA LYPDIAEADC RLVVMHSAQR DGIATRTGHL RPEDALDEIV RFFEARVSAL RRSGVAADRL ILDPGMGFFL SPAPETSLHV LSNLQKLKSA
LGLPLLVSVS RKSFLGATVG LPVKDLGPAS LAAELHAIGN GADYVRTHAP GDLRSAITFS ETLAKFRSRD ARDRGLDHA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| qacEdelta1 (ARO:3005010) |
QacEdelta1 |
In6_p |
348 |
7635-7982 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic efflux (ARO:0010000) |
| Target: | disinfecting agents and antiseptics (ARO:3005386) |
| Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
| Comment: | subunit of the qac multidrug efflux pump||perfect match to reference sequence for ARO:3005010 (bitscore:219) |
Protein Sequence:
|
MKGWLFLVIA IVGEVIATSA LKSSEGFTKL APSAVVIIGY GIAFYFLSLV LKSIPVGVAY AVWSGLGVVI ITAIAWLLHG QKLDAWGFVG MGLIIAAFLL
ARSPSWKSLR RPTPW
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| aadA3 (ARO:3002603) |
AadA3 |
In6_p |
792 |
8146-8937 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | ANT(3'') (ARO:3004275) |
| Comment: | strict match to reference sequence for ARO:3002603 (bitscore: 522) |
Protein Sequence:
|
MRVAVTIEIS NQLSEVLSVI ERHLESTLLA VHLYGSAVDG GLKPYSDIDL LVTVAVKLDE TTRRALLNDL MEASAFPGES ETLRAIEVTL VVHDDIIPWR
YPAKRELQFG EWQRNDILAG IFEPAMIDID LAILLTKARE HSVALVGPAA EEFFDPVPEQ DLFEALRETL KLWNSQPDWA GDERNVVLTL SRIWYSAITG
KIAPKDVAAD WAIKRLPAQY QPVLLEAKQA YLGQKEDHLA SRADHLEEFI RFVKGEIIKS VGK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| AAC(6')-Ib8 (ARO:3002579) |
AAC(6')-Ib8 |
In6_p |
552 |
9007-9558 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | AAC(6') (ARO:3000345) |
| Comment: | strict match to reference sequence for ARO:3002579 missing 43 aa N-ter (bitscore: 379) |
Protein Sequence:
|
TNSTDSVTLR LMTEHDLAML YEWLNRSHIV EWWGGEEARP TLADVQEQYL PSVLAQESVT PYIAMLNGEP IGYAQSYVAL GSGDGWWEEE TDPGVRGIDQ
SLANASQLGK GLGTKLVRAL VELLFNDPEV TKIQTDPSPS NLRAIRCYEK AGFERQGTVT TPDGPAVYMV QTRQAFERTR SDA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| intI1 |
IntI1 |
In6_p |
1014 |
9722-10735 |
+ |
| Class: | Integron Integrase |
| Sub Class: | Class 1 |
| Transpoase Chemistry: | Tyrosine |
| Sequence Family: | Class 1 Integron Tyrosine Integrase |
Protein Sequence:
|
MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVNW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGSKDRALML PESLAPSLRE QLSRARAWWL
KDQAEGRSGV ALPDALERKY PRAGHSWPWF WVFAQHTHST DPRSGVVRRH HMYDQTFQRA FKRAVEQAGI TKPATPHTLR HSFATALLRS GYDIRTVQDL
LGHSDVSTTM IYTHVLKVGG AGVRSPLDAL PPLTSER
|
|
| Internal Transposable Elements (TE) |
|
|
| TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
| ISCR1-L06822 |
ISCR1 |
Insertion Sequence |
4624-6777 |
2154 |
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| repeat i3 |
In6_p |
10846-10864 |
CGTCGGGCAG CAACGGACT |
| repeat i2 |
In6_p |
10888-10906 |
ATCACGTCAG CCGAAGACT |
| IRi |
In6_p |
10905-10937 |
CTGCAAGTCA CGTCGGCAGA AGACTTTTGC TGT |
|
| References |
|
|
| 1. | Stokes HW, Tomaras C, Parsons Y, Hall RM. The partial 3'-conserved segment duplications in the integrons In6 from pSa and In7 from pDGO100 have a common origin. Plasmid. 1993 Jul;30(1):39-50. doi: 10.1006/plas.1993.1032. PubMed ID: 8378445
| | | 2. | Bito A, Susani M. Revised analysis of aadA2 gene of plasmid pSa. Antimicrob Agents Chemother. 1994 May;38(5):1172-5. doi: 10.1128/AAC.38.5.1172. PubMed ID: 7915099
| | | 3. | Valentine CR, Heinrich MJ, Chissoe SL, Roe BA. DNA sequence of direct repeats of the sulI gene of plasmid pSa. Plasmid. 1994 Sep;32(2):222-7. doi: 10.1006/plas.1994.1059. PubMed ID: 7846147
| | | 4. | Hall RM, Brown HJ, Brookes DE, Stokes HW. Integrons found in different locations have identical 5' ends but variable 3' ends. J Bacteriol. 1994 Oct;176(20):6286-94. doi: 10.1128/jb.176.20.6286-6294.1994. PubMed ID: 7929000
| | | 5. | Collis CM, Hall RM. Expression of antibiotic resistance genes in the integrated cassettes of integrons. Antimicrob Agents Chemother. 1995 Jan;39(1):155-62. doi: 10.1128/AAC.39.1.155. PubMed ID: 7695299
| | | 6. | Partridge SR, Hall RM. In34, a complex In5 family class 1 integron containing orf513 and dfrA10. Antimicrob Agents Chemother. 2003 Jan;47(1):342-9. doi: 10.1128/AAC.47.1.342-349.2003. PubMed ID: 12499211
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