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Transposon
Name: In31
Family: Tn402        Group: Class 1
Evidence of Transposition: no
 Host     

Host Organism:Pseudomonas aeuroginosa 101/1477
Place of Origin:Japan Date of Isolation:1999
Other Geographic Information:clinical strain

 Map     



 Terminal Inverted Repeats (IR)     


 Sequence     
DNA SequenceLength  9443 
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAGTT GATTGGGCGT AAGTGCTGTT GTGCAGCCAG CTCCTGACAG TTCAATATCA GAAGTGATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGAG CATGGCGACG GACACCCCAC GGATTCCAGA ACAAGGCGTG GCCACTCTGC CTGATGAGGC 200
TTGGGAGCGT GCGCGCCGTC GTGCGGAGAT CATCAGTCCG TTGGCGCAGT CGGAGACGGT CGGGCACGAC GCGGCCGATA TGGCGGCTCA GGCGCTGGGC 300
TTGTCTCGGC GCCAGGTATA CGTTCTGATC CGGCGTGCCC GGCAAGGCAG CGGCCTCGTG ACGGATCTGG TGCCCGGCCA GTCCGGTGGA GGTAAAGGTA 400
AGGGGCGCTT GCCGGAACCG GTCGAGCGCG TCATCCACGA GCTACTGCAA AAGCGGTTCC TGACCAAGCA GAAGCGCAGC CTAGCGGCCT TTCACCGCGA 500
AGTCACTCAG GTGTGCAAGG CTCAAAAACT GCGAGTGCCG GCGCGCAATA CCGTGGCCTT ACGGATCGCT AGCCTTGACC CGCGCAAGGT CATCCGCCGG 600
CGGGAAGGCC AGGATGCCGC TCGTGACCTA CAAGGTGTGG GCGGCGAGCC TCCTGCCGTG ACCGCGCCGC TGGAGCAGGT GCAGATAGAC CATACGGTCA 700
TCGACCTGAT CGTGGTCGAT GACCGCGACC GGCAACCTAT TGGCCGCCCG TACCTGACCC TCGCCATCGA CGTGTTCACC CGCTGCGTGC TCGGCATGGT 800
CGTCACGCTG GAAGCGCCGT CTGCCGTTTC GGTTGGCCTG TGCCTCGTGC ATGTCGCCTG CGACAAGCGC CCTTGGCTGG AAGGACTGAA CGTGGAAATG 900
GATTGGCAGA TGAGCGGCAA GCCCTTGCTG CTCTACCTAG ACAACGCGGC CGAGTTCAAG AGCGAGGCCC TGCGCCGGGG TTGCGAGCAG CATGGCATCC 1000
GGCTGGACTA TCGCCCGCTG GGACAGCCGC ACTATGGCGG CATCGTGGAA CGGATCATCG GCACGGCGAT GCAGATGATT CACGACGAAC TGCCGGGAAC 1100
GACCTTCTCC AACCCTGACC AGCGCGGCGA CTACGATTCC GAAAACAAGG CCGCCCTGAC GCTGCGCGAG CTAGAGCGCT GGCTCACATT GGCGGTCGGC 1200
ACCTACCACG GTTCGGTGCA CAACGGCCTG CTCCAACCGC CGGCCGCGCG CTGGGCCGAG GCCGTGGCGC GTGTCGGCGT ACCGGCCGTC GTCACACGCG 1300
CTACTTCGTT CCTGGTCGAT TTTCTGCCGA TCCTCCGGCG CACGCTGACC CGCACCGGCT TTGTCATCGA CCACATCCAC TACTACGCCG ATGCGCTCAA 1400
GCCGTGGATT GCGCGGCGTG AACGCTGGCC GTCCTTTCTG ATCCGGCGCG ATCCGCGCGA CATCAGCCGT ATCTGGGTCC TGGAACCGGA GGGACAGCAT 1500
TACCTGGAAA TTCCCTACCG TACCTTGTCG CATCCGGCTG TCACCCTCTG GGAACAACGG CAGGCGCTGG CGAAACTGCG GCAGCAAGGG CGCGAACAGG 1600
TGGATGAGTC GGCGCTGTTC CGCATGATCG GCCAGATGCG TGAGATTGTG ACCAGCGCGC AGAAGGCCAC ACGCAAGGCG CGGCGTGACG CGGATCGCCG 1700
CCAGCACCTC AAGACATCAG CTCGGCCGGA CAAGCCCGTT CCGCCGGATA CGGATATTGC CGACCCGCAG GCAGACAACT TGCCACCCGC CAAACCGTTC 1800
GACCAGATTG AGGAGTGGTA GCCGTGGACG AATATCCCAT CATCGACCTG TCCCACCTGC TGCCGGCGGC CCAGGGCTTG GCCCGTCTTC CGGCGGACGA 1900
GCGCATCCAG CGCCTTCGCG CCGACCGCTG GATCGGCTAT CCGCGCGCAG TCGAGGCGCT GAACCGGCTG GAAGCCCTTT ATGCGTGGCC AAACAAGCAA 2000
CGCATGCCCA ACCTGCTGCT GGTTGGCCCG ACCAACAATG GCAAGTCGAT GATCGTCGAG AAGTTCCGCC GCACCCACCC GGCCAGCTCC GACGCCGACC 2100
AGGAGCACAT CCCGGTGTTG GTCGTGCAGA TGCCGTCCGA GCCGTCCGTG ATCCGCTTCT ACGTCGCGCT GCTCGCCGCG ATGGGCGCGC CGCTGCGCCC 2200
ACGCCCACGG TTGCCGGAAA TGGAGCAACT GGCTCTGGCG TGGGTTTGAT CACGTGTCGA AACCCTGGCG TACCCCACCA ACATGCTGTT CTCCTCTCAA 2300
AACACTTAGA AACGTAGAAT CGGTGAGAGA TCGGAAGCCG AGAGGCAGTT TTGAGAGACC TTCAACCTTC GGCAGACTGT CGGCTTTGGT ATCTCTCATA 2400
AACGGATGTT TTTGAGAGAA CTATCTTCGG CCTTCACACG CACGAAAGGC GGCGAAGCTC CGCCGTTAAT CCGTCCGCCG GAGATCTCGC CCAGGCAGGC 2500
TGAAGGCCGA GCAAGCCTGA CAGGCCCGAA AAGCCCGGCA CGGGCGTCGG CGGCGATGAC GGCGGCGGCA TTATCCAGGG TTGATGATGG AAGTGGAGGA 2600
TATCGACAAC CTCTCGCGCA ACCAAGACAT CGCGGTCGGA CTGCAAGTGA TCTTGAAGCC ACGGGCCCGT CCCACCCCGA CATGGACCTC GATGCCCGAA 2700
CGGACGTTAG ATTTCGAGTT CTAGGCGTTC TGCGATGAAG GTTGGATCCC AGCCGGGATT GAAAGTGTCG ACGTGGGTGA ATCCGAGCCG CTCGTATAGG 2800
CCACGCAGGT TCGGGTGGCA GTCGAGCCGC AGCTTGGCGC ACCCCTGCGT TCGCGCGGCA TGGCGGCAAG CCTCGATCAG CGCGGAGCTG ACACCCCGGC 2900
CCGCATGTGT CCGTCGCACC GCGAGCTTGT GCAGATATGC GGCCTCCCCC TTGAGGGCGT CGGGCCAGAA CTCGGGATCC TCGGCCGACA AGGTGCAACA 3000
GCCGACGATG CCGTCGCTGC AACTCGCGAC TAGGAGCTCG GATCTCAGGA CGAAGGTCTC CGCGAATGTC CGGTCGATCC GCGCGACGTC CCAGGCGGGC 3100
GTTCCCTTGG CGGACATCCA CGCCGCAGCG TCGTGCATCA GCCGCACAAC CTCGTCGATA TCACCCGAGC AGGCGACCCG AACGTTCGGA GGCTCCTCGC 3200
TGTCCATTCG CTCCCCTGGC GCGGTATGAA CCGCCGCCTC ATAGTGCAGT TTGATCCTGA CGAGCCCAGC ATGTCTGCGC CCACCTTCGC GGAACCTGAC 3300
CAGGGTCCGC TAGCGGGCGG CCGGAAGGTG AATGCTAGGC ATGATCTAAC CCTCGGTCTC TGGCGTCGCG ACTGCGAAAT TTCGCGAGGG TTTCCGAGAA 3400
GGTGATTGCG CTTCGCAGAT CTCCAGGCGC GTGGGTGCGG ACGTAGTCAG CGCCATTGCC GATCGCGTGA AGTTCCGCCG CAAGGCTCGC TGGACCCAGA 3500
TCCTTTACAG GAAGGCCAAC GGTGGCGCCC AAGAAGGATT TCCGCGACAC CGAGACCAAT AGCGGAAGCC CCAACGCCGA CTTCAGCTTT TGAAGGTTCG 3600
ACAGCACGTG CAGCGATGTT TCCGGTGCGG GGCTCAAGAA AAATCCCATC CCCGGATCGA GGATGAGCCG GTCGGCAGCG ACCCCGCTCC GTCGCAAGGC 3700
GGAAACCCGC GCCTCGAAGA ACCGCACAAT CTCGTCGAGC GCGTCTTCGG GTCGAAGGTG ACCGGTGCGG GTGGCGATGC CATCCCGCTG CGCTGAGTGC 3800
ATAACCACCA GCCTGCAGTC CGCCTCAGCA ATATCGGGAT AGAGCGCAGG GTCAGGAAAT CCTTGGATAT CGTTCAGGTA GCCCACGCCG CGCTTGAGCG 3900
CATAGCGCTG GGTTTCCGGT TGGAAGCTGT CGATTGAAAC ACGGTGCATC TGATCGGACA GGGCGTCTAA GAGCGGCGCA ATACGTCTGA TCTCATCGGC 4000
CGGCGATACA GGCCTCGCGT CCGGATGGCT GGCGGCCGGT CCGACATCCA CGACGTCTGA TCCGACTCGC AGCATTTCGA TCGCCGCGGT GACAGCGCCG 4100
GCGGGGTCTA GCCGCCGGCT CTCATCGAAG AAGGAGTCCT CGGTGAGATT CAGAATGCCG AACACCGTCA CCATGGCGTC GGCCTCCGCA GCGACTTCCA 4200
CGATGGGGAT CGGGCGAGCA AAAAGGCAGC AATTATGAGC CCCATACCTA CAAAGCCCCA CGCATCAAGC TTTTGCCCAT GAAGCAACCA GGCAATGGCT 4300
GTAATTATGA CGACGCCGAG TCCCGACCAG ACTGCATAAG CAACACCGAC AGGGATGGAT TTCAGAACCA GAGAAAGAAA ATAAAATGCG ATGCCATAAC 4400
CGATTATGAC AACGGCGGAA GGGGCAAGCT TAGTAAAGCC CTCGCTAGAT TTTAATGCGG ATGTTGCGAT TACTTCGCCA ACTATTGCGA TAACAAGAAA 4500
AAGCCAGCCT TTCATGATAT ATCTCCCAAT TTGTGTAGGG CTTATTATGC ACGCTTAAAA ATAATAAAAG CAGACTTGAC CTGATAGTTT GGCTGTGAGC 4600
AATTATGTGC TTAGTGCATC TAACGTTTGA CGTGAGGGGC CGCCGTACCG GAACCGAAGG GAAACCCGCA AGCGCACCTT GGCCGGGTCC CTCTCGACGG 4700
AATGGTTAGA TGCGACCGTT TTAGTGAACA CTTGCCTTAG ATAGCAAGTT GAGCACAGCA ACGCCGCTGA TAATGAAGCC GACACCAACA AATCCCCACA 4800
TATCTAGTTT TTGACCATGC AAAACCCATG CAATCGCAGT GACCAAGACG ATCCCGAGGC CCGACCAAAC TGCGTAGGCG ATTCCAACAG GAATCGATTT 4900
GAGTGTCAGC GACAGGAAAT AAAAAGCAGC AGCGTATCCC GCTACGACGA TAAAAGACGG TACTAACCTA GTAAAGCCCT CACTAGACTT GAGCGCAGAG 5000
GTTGCAATGA CCTCAAAAAT AATGGCCGTA GCCAGAAATA ACCAATTTTT CAAAATATTT CTCCATGGAG TTCCGCGAAG AAATTTTAGG TTCGATTTAA 5100
GAAAAAAAAC AGTCTTGTTG CTGGCCGAAA TTTGTGCGCA CAGCAAAGCA TCTAACGTTT GGTTAAGGGG CGGCTTTAGC CCGTCCCAGC GAGCGGAGCG 5200
AGCGATTTGA ACCATTTGTT AGGAATGGGC CACAACGCTG AAGATCTCGT TAATTTTAGC CTCTAAGATT CCGGTATGGT TCGTGTAACC TACGAGGCGA 5300
TCATCTGCGG CTTCCAACGC TAAAAGCAAA AATTCTTTTG CCCTGTTTTG GGATACAACG TTTGCAGGAG TGACAAATTG GCCGTTTTCA TTTGAAAAAT 5400
ACAAGGATGA CTCTCTGAGA TTTCTAAACT CCCCATGTGC AGCCTCTTTT AGTAGTTCGG CGCATTTTTC TTTGCCTAAA GCCTCTTCTA AGCGCTTACT 5500
CATAAATACT GTAGGCAATA TAGCCATGCG GTGTTTTTCT TGATGGTTGA AAAGCTTATC TTTGCCGCGC TTAGCTTTTC CGATTTTGCC TTCTCTTCGA 5600
TAAAGGCCAA CCTCTGCTTT TGCTACTTCT TCAATTGCAG TAATTGAAAG AAATACCGAT GTACCCCAAG AGCCACGATC AAAGCACTGA AATGCATCTA 5700
CTAGCAGCAC AAGTATGTGA TCACAAGCCC TGTTGAAGTC ATCGGTTTTG GTTTTTTCAT TAAAAATGAG TGAACCTTTC TCCAATGCTT CCTGGACGGT 5800
TTGTATTCCA ATGCTTTGCA GGTCTACGTC CATTGAATTC CTAACGCCCG CCACACGGGC GAGCAACTTG TTGCGAGTCC AGCGCCGCAG GCGATGGTGC 5900
TGGCGCTTGT TAGACGGCAA TCCCACGCCA ATGCCTGTGC AGACCAAAAA TGTCTGAAGA GCAGAGAAGG GGCATAGCTG TTTTGATTTT ATCTAACGGC 6000
CAGTTCCACC ACTCCATTTC CATGAGTAAT GAAATCTCCT CGTCAGAGAA TCGCTTTTTA ATTTGCTTTG CAGGGTTTCC GCCAATGATG GTATAGGGTT 6100
CTACATCTCT CGTCACCAAC GATCGGCTGC CTATTACCGC GCCATCTCCA ATCTTGATGC CGGGCATAAT CATTGCCTCT GATCCTATCC AGACATCATT 6200
GCCGACGATG GTGTCACCGG CCTTTTGAAA GGCGTCCGTT GAACTTGAAA AAGCTGGCTC TTCTTGCATG TAGAAGAAAG GGAAAGATGT TACCCAGTCA 6300
TGCCGGTGAC CCTGATTGCC CGCCATGATG AAAGAAGCCC CGCTTCCGAT GGAGCAAAAG CTGCCGATGA TTAGTTTGTC AACGTCATCA CGGTCTGGGA 6400
GCAAGTATCG TGCGCAGTCA TCAAATGAAT GCCCGTGATA GTAACCAGAG TAGTAGCTGT ACCGACCAAC TTTGATGTTG CGGTTAGTCA CTTGCTCTGA 6500
AAGTAGTTTC CCTTTGAAGG GACTGTCAAA GTAATTTTCC ATAAGAGATC GCAAAAATTT ATTCTGCCGT CTAACGTTTG ACATGAGGGG CGGCCAAGGG 6600
CGCCAGCCCT TGGACGTCCC CCTCGATGGA AGGGTTAGGC ATCACTGCGT GTTCGCTCGA ATGCCTGGCG TGTTTGAACC ATGTACACGG CTGGACCATC 6700
TGGGGTGGTT ACGGTACCTT GCCTCTCAAA CCCCGCTTTC TCGTAGCATC GGATCGCTCG CAAGTTGCTC GGCGACGGGT CCGTTTGGAT CTTGGTGACC 6800
TCGGGATCAT TGAACAGCAA CTCAACCAGA GCTCGAACCA GCTTGGTTCC CAAGCCTTTG CCCAGTTGTG ATGCATTCGC CAGTAACTGG TCTATTCCGC 6900
GTACTCCTGG ATCGGTTTCT TCTTCCCACC ATCCGTCCCC GCTTCCAAGA GCAACGTACG ACTGGGCATA CCCAATCGGC TCTCCATTCA GCATTGCAAT 7000
GTATGGAGTG ACGGACTCTT GCGCTAAAAC GCTTGGCAAG TACTGTTCCT GTACGTCAGC AAGTGTCGGG CGTGCTTCTT CTCCGCCCCA CCACTCGACG 7100
ATATGAGATC GATTTAGCCA CTCATAGAGC ATCGCAAGGT CATGCTCAGT CATGAGGCGC AGTGTGACGG AATCGGTGCT GTTGGTCACG ATGCTGTACT 7200
TTGTGATGCC TAACGCTAAG TTCAGCGGCA GTTTGTAAGT TGCGCGTTGT GGAATACTTT GCGAAGCAAA CCACAAAAGC GCAACTTACA AACTGTCCAG 7300
CCACGTAGGC GTGCTGCAAC GACTTGTTAG AAATTTAGTT GCTTGGTTTT GATGGTTTTT TACTTTCGTT TAACCCTTTA ACCGCCTGCT CTAATGTAAG 7400
TTTCAAGAGT GATGCGTCTC CAACTTCACT GTGACTTGGA ACAACCAGTT TTGCCTTACC ATATTTGGAC TTTAATAATT TGGCGGACTT TGGCCAAGCT 7500
TCTATATTTG CGTCACCCAA ATTGCCTAAA CCGTACGGTT TAATAAAACA ACCACCGAAT AATATTTTCC TTTCAGGCAA CCAAACCACT ACGTTATCTG 7600
GAGTGTGTCC CGGGCCTGGA TAAAAAACTT CAATTTTATT TTTAACTAGC CAATAGTTAA CTCCGCTAAA TGAATTTGTG GCTTGAACCT TACCGTCTTT 7700
TTTAAGCAGT TCATTTGTTA ATTCAGATGC ATACGTGGGG ATAGATCGAG AATTAAGCCA CTCTATTCCG CCCGTGCTGT CGCTATGAAA ATGAGAGGAA 7800
ATGCTGCCTT TTATTTTATA GCCACGCTCC ACAAACCAAG TGACTAACTT TTCAGTATCT TTAGCCGTAA ATGGAGTGTC AATTAGGTAA GCCTCAGCAT 7900
TTACAAGAAC CACCAAACCA TGTTTAGGAA CAACGCCCCA CCCGTTAACT TCTTCAAACG AAGTATGAAC ATAAACGCCT TCATCAAGCT TTTCAATTTT 8000
TAAATCTGGC AAAGACTCTG CTGCGGTAGC AATGCTGCAA AACAAAAATA TAAAGAATAC AGATAACTTG CTCATACTTT TCCTTTTCTA ACTTTGTTTT 8100
AGGGCGACTG CCCTGCTGCG TAACATCGTT GCTGCTCCAT AACATCAAAC ATCGACCCAC GGCGTAACGC GCTTGCTGCT TGGATGCCCG AGGCATAGAC 8200
TGTACAAAAA AACAGTCATA ACAAGCCATG AAAACCGCCA CTGCGCCGTT ACCACCGCTG CGTTCGGTCA AGGTTCTGGA CCAGTTGCGT GAGCGCATAC 8300
GCTACTTGCA TTACAGTTTA CGAACCGAAC AGGCTTATGT CCACTGGGTT CGTGCCTTCA TCCGTTTCCA CGGTGTGCGT CACCCGGCAA CCTTGGGCAG 8400
CAGCGAAGTC GAGGCATTTC TGTCCTGGCT GGCGAACGAG CGCAAGGTTT CGGTCTCCAC GCATCGTCAG GCATTGGCGG CCTTGCTGTT CTTCTACGGC 8500
AAGGTGCTGT GCACGGATCT GCCCTGGCTT CAGGAGATCG GAAGACCTCG GCCGTCGCGG CGCTTGCCGG TGGTGCTGAC CCCGGATGAA GTGGTTCGCA 8600
TCCTCGGTTT TCTGGAAGGC GAGCATCGTT TGTTCGCCCA GCTTCTGTAT GGAACGGGCA TGCGGATCAG TGAGGGTTTG CAACTGCGGG TCAAGGATCT 8700
GGATTTCGAT CACGGCACGA TCATCGTGCG GGAGGGCAAG GGCTCCAAGG ATCGGGCCTT GATGTTACCC GAGAGCTTGG CACCCACGCT GCGCGAGCAG 8800
CTGTCGCGTG CACGGGCATG GTGGCTGAAG GACCAGGCCG AGGGCCGCAG CGGCGTTGCG CTTCCCGACG CCCTTGAGCG GAAGTATCCG CGCGCCGGGC 8900
ATTCCTGGCC GTGGTTCTGG GTTTTTGCGC AGCACACGCA TTCGACCGAT CCACGGAGCG GTGTCGTGCG TCGCCATCAC ATGTATGACC AGACCTTTCA 9000
GCGCGCCTTC AAACGTGCCG TAGAACAAGC AGGCATCACG AAGCCCGCCA CACCGCACAC CCTCCGCCAC TCGTTCGCGA CGGCCTTGCT CCGCAGCGGT 9100
TACGACATTC GAACCGTGCA GGATCTGCTC GGCCATTCCG ACGTCTCTAC GACGATGATT TACACGCATG TGCTGAAAGT TGGCGGTGCC GGAGTGCGCT 9200
CACCGCTTGA TGCGCTGCCG CCCCTCACTA GTGAGAGGTA GGGCAGCGCA AGTCAATCCT GGCGGATTCA CTACCCCTGC GCGAAGGCCA TCGGTGCCGC 9300
ATCGAACGGC CGGTTGCGGA AAGTCCTCCC TGCGTCCGCT GATGGCCGGC AGCAGCCCGT CGTTGCCTGA TGGATCCAAC CCCTCCGCTG CTATAGTGCA 9400
GTCGGCTTCT GACGTTCAGT GCAGCCGTCT TCTGAAAACG ACA

 Recombination Sites     

Name Coordinates Gene Sequence
attC qacEdelta1_sul1 core 3307-3340 34 CCGCTAGCGG GCGGCCGGAA GGTGAATGCT AGGC
attC AAC(6')-Ib core 6575-6640 66 CGTTTGACAT GAGGGGCGGC CAAGGGCGCC AGCCCTTGGA CGTCCCCCTC GATGGAAGGG
TTAGGC
attI 8092-8147 56 CTTTGTTTTA GGGCGACTGC CCTGCTGCGT AACATCGTTG CTGCTCCATA ACATCA

 ORFs     
ORF Summary
Gene Name Associated TE Coordinates Class Sub Class Orientation
tniA In31 142-1821 Transposase   +
tniB delta2 In31 1824-2249 Accessory Gene   +
WP_001424634.1 In31 2396-2683 Passenger Gene Hypothetical -
GNAT_fam In31 2707-3207 Passenger Gene Antibiotic Resistance -
sul1 (ARO:3000410) In31 3335-4174 Passenger Gene Antibiotic Resistance -
qacEdelta1 (ARO:3005010) In31 4168-4515 Passenger Gene Antibiotic Resistance -
qacL (ARO:3005098) In31 4721-5053 Passenger Gene Antibiotic Resistance -
abiV family In31 5219-5833 Passenger Gene Other -
Paer_catB6 (ARO:3002678) In31 5910-6542 Passenger Gene Antibiotic Resistance -
AAC(6')-Ib8 (ARO:3002579) In31 6635-7186 Passenger Gene Antibiotic Resistance -
bla IMP-1 (ARO:3002192) In31 7335-8075 Passenger Gene Antibiotic Resistance -
intI1 In31 8228-9241 Integron Integrase Class 1 +

ORF Details
Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniA TniA In31 1680 142-1821 +
Class:   Transposase
Transpoase Chemistry:   DDE
Comment:   can be extended upstream by 12 amino acids| identical to tniA (Tn1721 and In2)| 25% amino acid sequence identity to TnsB from Tn7
Protein Sequence:  
 MATDTPRIPE QGVATLPDEA WERARRRAEI ISPLAQSETV GHDAADMAAQ ALGLSRRQVY VLIRRARQGS GLVTDLVPGQ SGGGKGKGRL PEPVERVIHE
LLQKRFLTKQ KRSLAAFHRE VTQVCKAQKL RVPARNTVAL RIASLDPRKV IRRREGQDAA RDLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDDRDRQPI
GRPYLTLAID VFTRCVLGMV VTLEAPSAVS VGLCLVHVAC DKRPWLEGLN VEMDWQMSGK PLLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WAEAVARVGV PAVVTRATSF LVDFLPILRR
TLTRTGFVID HIHYYADALK PWIARRERWP SFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALAKLR QQGREQVDES ALFRMIGQMR
EIVTSAQKAT RKARRDADRR QHLKTSARPD KPVPPDTDIA DPQADNLPPA KPFDQIEEW

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tniB delta2 TniB delta2 In31 426 1824-2249 +
Class:   Accessory Gene
Sequence Family:  ATP binding protein
Comment:   similar function to Tn7 tnsC and MuB
Protein Sequence:  
 MDEYPIIDLS HLLPAAQGLA RLPADERIQR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLVGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAW V

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
WP_001424634.1 WP_001424634.1 In31 288 2396-2683 -
Class:   Passenger Gene
Sub Class:   Hypothetical
Protein Sequence:  
 MSGWDGPVAS RSLAVRPRCL GCARGCRYPP LPSSTLDNAA AVIAADARAG LFGPVRLARP SACLGEISGG RINGGASPPF VRVKAEDSSL KNIRL

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
GNAT_fam GNAT_fam In31 501 2707-3207 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  Acetyltransf_1 (Pfam:PF00583)
Comment:   putative acetyltransferase ADU64769.1
Protein Sequence:  
 MDSEEPPNVR VACSGDIDEV VRLMHDAAAW MSAKGTPAWD VARIDRTFAE TFVLRSELLV ASCSDGIVGC CTLSAEDPEF WPDALKGEAA YLHKLAVRRT
HAGRGVSSAL IEACRHAART QGCAKLRLDC HPNLRGLYER LGFTHVDTFN PGWDPTFIAE RLELEI

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
sul1 (ARO:3000410) Sul1 In31 840 3335-4174 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic target replacement (ARO:0001002)
Transpoase Chemistry:   dihydropteroate synthase
Target:   sulfonamide antibiotic (ARO:3000282)||sulfone antibiotic (ARO:3003401)
Sequence Family:  sulfonamide resistant sul (ARO:3004238)
Comment:   perfect match to reference sequence for ARO:3000410
Protein Sequence:  
 MVTVFGILNL TEDSFFDESR RLDPAGAVTA AIEMLRVGSD VVDVGPAASH PDARPVSPAD EIRRIAPLLD ALSDQMHRVS IDSFQPETQR YALKRGVGYL
NDIQGFPDPA LYPDIAEADC RLVVMHSAQR DGIATRTGHL RPEDALDEIV RFFEARVSAL RRSGVAADRL ILDPGMGFFL SPAPETSLHV LSNLQKLKSA
LGLPLLVSVS RKSFLGATVG LPVKDLGPAS LAAELHAIGN GADYVRTHAP GDLRSAITFS ETLAKFRSRD ARDRGLDHA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
qacEdelta1 (ARO:3005010) QacEdelta1 In31 348 4168-4515 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic efflux (ARO:0010000)
Target:   disinfecting agents and antiseptics (ARO:3005386)
Sequence Family:  major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002)
Comment:   subunit of the qac multidrug efflux pump||perfect match to reference sequence for ARO:3005010 (bitscore:219)
Protein Sequence:  
 MKGWLFLVIA IVGEVIATSA LKSSEGFTKL APSAVVIIGY GIAFYFLSLV LKSIPVGVAY AVWSGLGVVI ITAIAWLLHG QKLDAWGFVG MGLIIAAFLL
ARSPSWKSLR RPTPW

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
qacL (ARO:3005098) QacL In31 333 4721-5053 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic efflux (ARO:0010000)
Target:   disinfecting agents and antiseptics (ARO:3005386)
Sequence Family:  small multidrug resistance (SMR) antibiotic efflux pump (ARO:0010003)
Comment:   subunit of the qac multidrug efflux pump||loose match to reference sequence for ARO:3005098 (bitscore:173)
Protein Sequence:  
 MKNWLFLATA IIFEVIATSA LKSSEGFTRL VPSFIVVAGY AAAFYFLSLT LKSIPVGIAY AVWSGLGIVL VTAIAWVLHG QKLDMWGFVG VGFIISGVAV
LNLLSKASVH

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
abiV family AbiV family In31 615 5219-5833 -
Class:   Passenger Gene
Sub Class:   Other
Sequence Family:  AbiV family abortive infection protein (WP_017363802.1)
Protein Sequence:  
 MDVDLQSIGI QTVQEALEKG SLIFNEKTKT DDFNRACDHI LVLLVDAFQC FDRGSWGTSV FLSITAIEEV AKAEVGLYRR EGKIGKAKRG KDKLFNHQEK
HRMAILPTVF MSKRLEEALG KEKCAELLKE AAHGEFRNLR ESSLYFSNEN GQFVTPANVV SQNRAKEFLL LALEAADDRL VGYTNHTGIL EAKINEIFSV
VAHS

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
Paer_catB6 (ARO:3002678) Paer_catB6 In31 633 5910-6542 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Target:   phenicol antibiotic (ARO:3000387)
Sequence Family:  chloramphenicol acetyltransferase (CAT) (ARO:3000122)
Comment:   strict match to reference sequence for ARO:3002678 (bitscore: 438)
Protein Sequence:  
 MENYFDSPFK GKLLSEQVTN RNIKVGRYSY YSGYYHGHSF DDCARYLLPD RDDVDKLIIG SFCSIGSGAS FIMAGNQGHR HDWVTSFPFF YMQEEPAFSS
STDAFQKAGD TIVGNDVWIG SEAMIMPGIK IGDGAVIGSR SLVTRDVEPY TIIGGNPAKQ IKKRFSDEEI SLLMEMEWWN WPLDKIKTAM PLLCSSDIFG
LHRHWRGIAV

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
AAC(6')-Ib8 (ARO:3002579) AAC(6')-Ib8 In31 552 6635-7186 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Target:   aminoglycoside antibiotic (ARO:0000016)
Sequence Family:  AAC(6') (ARO:3000345)
Comment:   strict match to reference sequence for ARO:3002579 missing 43 aa N-ter (bitscore: 379)
Protein Sequence:  
 TNSTDSVTLR LMTEHDLAML YEWLNRSHIV EWWGGEEARP TLADVQEQYL PSVLAQESVT PYIAMLNGEP IGYAQSYVAL GSGDGWWEEE TDPGVRGIDQ
LLANASQLGK GLGTKLVRAL VELLFNDPEV TKIQTDPSPS NLRAIRCYEK AGFERQGTVT TPDGPAVYMV QTRQAFERTR SDA

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
bla IMP-1 (ARO:3002192) Bla IMP-1 In31 741 7335-8075 -
Class:   Passenger Gene
Sub Class:   Antibiotic Resistance
Function:   antibiotic inactivation (ARO:0001004)
Target:   cephalosporin (ARO:0000032)||penem (ARO:3003706)||penam (ARO:3000008)||cephamycin (ARO:0000044)||carbapenem (ARO:0000020)
Sequence Family:  IMP beta-lactamase (ARO:3000020)
Comment:   100% identical to reference sequence for ARO:3002192
Protein Sequence:  
 MSKLSVFFIF LFCSIATAAE SLPDLKIEKL DEGVYVHTSF EEVNGWGVVP KHGLVVLVNA EAYLIDTPFT AKDTEKLVTW FVERGYKIKG SISSHFHSDS
TGGIEWLNSR SIPTYASELT NELLKKDGKV QATNSFSGVN YWLVKNKIEV FYPGPGHTPD NVVVWLPERK ILFGGCFIKP YGLGNLGDAN IEAWPKSAKL
LKSKYGKAKL VVPSHSEVGD ASLLKLTLEQ AVKGLNESKK PSKPSN

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
intI1 IntI1 In31 1014 8228-9241 +
Class:   Integron Integrase
Sub Class:   Class 1
Transpoase Chemistry:   Tyrosine
Sequence Family:  Class 1 Integron Tyrosine Integrase
Protein Sequence:  
 MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVHW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGSKDRALML PESLAPTLRE QLSRARAWWL
KDQAEGRSGV ALPDALERKY PRAGHSWPWF WVFAQHTHST DPRSGVVRRH HMYDQTFQRA FKRAVEQAGI TKPATPHTLR HSFATALLRS GYDIRTVQDL
LGHSDVSTTM IYTHVLKVGG AGVRSPLDAL PPLTSER

 Internal Repeat Elements     

Name Associated Mobile Element Coordinates Sequence (Top Strand)
repeat t1 In31 9-27 TCAGAAGACG ACTGCACCA
repeat t2 In31 49-67 AACACGTCGG TCGAGGACT
repeat t3 In31 78-97 TCAGAAGTGA TCTGCACCAA
repeat t4 In31 110-128 TCAATACTCG TGTGCACCA
repeat i4 In31 9324-9342 AGGAGGGACG CAGGCGACT
repeat i3 In31 9352-9370 CGTCGGGCAG CAACGGACT
repeat i2 In31 9394-9412 ATCACGTCAG CCGAAGACT
IRi In31 9411-9443 CTGCAAGTCA CGTCGGCAGA AGACTTTTGC TGT

 References     

Laraki N, Galleni M, Thamm I, Riccio ML, Amicosante G, Frère JM, Rossolini GM. Structure of In31, a blaIMP-containing Pseudomonas aeruginosa integron phyletically related to In5, which carries an unusual array of gene cassettes. Antimicrob Agents Chemother. 1999 Apr;43(4):890-901. doi: 10.1128/AAC.43.4.890. PubMed ID: 10103196