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Recombination Sites | |
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Internal Transposable Elements | |
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Internal Repeats | |
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References | |
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| Name: ISXac1 |
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| Family: IS4 Group: IS10 |
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| Evidence of Transposition: no |
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| Host |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 50 bp) |  | TGAGGTTTCCCCACATTTCTTCCTGCGAGATCAAGCGCTTGGTGGGCCAG |
| IRR (Length: 50 bp) | | CTTAGGTATCCCCACGTTTTTAAAGCACCAGCGTCATCTGCTCACGCACT |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGAGGTTTCC CCACATTTCT TCCTGCGAGA TCAAGCGCTT GGTGGGCCAG GCGGTGGAAG AAGGTGCGCG CATGGGGCAC GCTTCAAGGT GATTAAGCCA 100
GAGAAGAGTG CCGACCATGC GCGCCAGCGA AGTATTGCAG AAGTGCCTGT CTAACTCACT CTCCGGGATG CATGCGTTAC GCCAACGTAC CTTGCTGGGC 200
GCGGTTGAAG CGCTAGTGCA CGGGGGCCGA CTGACGCTGA TCGACATCGC ACGCGCGTGG CCTGGCGCGA CGCGGGTACG TGCGCCCCTC AAGGCATGCG 300
ACCGCCTGCT GTGCAATCGC ACGTTGCAGG CCGAGCGATC CATGATCGAG CGGGACATGG CGCATTGGCT GTTGCGCGGC GACCAGCCGG TGATCGTCAT 400
CGACTGGAGC GATTTGAAGC CGGACAAGTC ATGGTGTCTG CTGCGCGCAG CCGTGCCGAT CGGTGGACGC ACACTCACCT TGCTGGACAT GGTGGTTGCC 500
GGGAAACAGC AGGGATCGCC CGGCGCGGAA AAACGCTTCT TGCAACAGCT CAGGCGAATG ATTCCAGACG ATGTGCGTCC GATCCTGGTC ACGGACGCCG 600
GATTCCGCAC GCCATGGTTT CGCGCGGTGT CGGCGATGGG CTGGGATTGG GTCGGGCGTC TTCGCGGACG CACGCAGGTC AAACCGCAAG ACGTGCCCGA 700
TGATGCAGCG CAATGGATCG ATAGCCGACG CCTGCATGCA TTGGCGTCCA ACCGTGCATG CGAATTGCCA CCGATGCAGG CCAATCGCAG TGATCCACTC 800
GATTGCCGTC TGGTGCTCTA TGCCAAGACA CGTCTGGGAC GTCAGCAACG CAACCGCCGC TCGCCAGCGA AGGTCTCGCG TGCATCCTCC AGCTTGAAAG 900
CAGCGGCGCG TGAACGCGAG CCGTGGTTGA TCGTTGCCTC CCCACAGTTA CAAGCACCCA GCGCGAAACA CTTGGTCAAT CTGTACGCAC GAAGGATGCA 1000
GATCGAGCTG GCATTTCGTG ATCTGAAGTC GCATCGCTAC GGTCAGGCGA TGGAAGACAG CCTGACCCGT CGCGGCGAGC GGTTGCAGAT CCTGTTGTTG 1100
CTCAACACAC TGGCCACCTT TGCCAGTTGG CTGGCAGGAC TGGGATGCGA AGCCACCGGT ATCGCCCAGT GGCTATCGCC ACGCAGCAGT ACACGCAAGC 1200
TCTACTCGAC ACTGCGTGTC GGCCGCCAGG CGCTGGCCAG GCGCTGGCCG ATGGAACCTG TCTCACGCTG GCTAGAACGC TTACGTACAC TGCCCGAAGC 1300
AGTGCGTGAG CAGATGACGC TGGTGCTTTA AAAACGTGGG GATACCTAAG
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnp |
ISXac1 |
117-1331 |
Transposase |
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+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
ISXac1 |
1215 |
117-1331 |
+ |
| Class: | Transposase |
| Function: | transposition |
| Transpoase Chemistry: | DDE |
Protein Sequence:
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MRASEVLQKC LSNSLSGMHA LRQRTLLGAV EALVHGGRLT LIDIARAWPG ATRVRAPLKA CDRLLCNRTL QAERSMIERD MAHWLLRGDQ PVIVIDWSDL
KPDKSWCLLR AAVPIGGRTL TLLDMVVAGK QQGSPGAEKR FLQQLRRMIP DDVRPILVTD AGFRTPWFRA VSAMGWDWVG RLRGRTQVKP QDVPDDAAQW
IDSRRLHALA SNRACELPPM QANRSDPLDC RLVLYAKTRL GRQQRNRRSP AKVSRASSSL KAAAREREPW LIVASPQLQA PSAKHLVNLY ARRMQIELAF
RDLKSHRYGQ AMEDSLTRRG ERLQILLLLN TLATFASWLA GLGCEATGIA QWLSPRSSTR KLYSTLRVGR QALARRWPME PVSRWLERLR TLPEAVREQM
TLVL
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