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Recombination Sites | |
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Internal Transposable Elements | |
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Internal Repeats | |
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References | |
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Name: ISKpn7 |
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Family: IS21 |
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Evidence of Transposition: no |
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Map |
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Terminal Inverted Repeats (IR) |
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IRL (Length: 29 bp) | | TGTTAGCAGCAGTGTAAAACTGACCCACC |
IRR (Length: 29 bp) | | TGTCAACACCAACTGAAAACTGACCCACT |
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Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTTAGCAGC AGTGTAAAAC TGACCCACCC CAGCGAAGTA AAACTGATCC ACCTGGGCTA GTTTGGCGGC CTTTTCGAGG CCGTCGATGT TGACCCAGGA 100
GCAAACCGTG GAAATCAGAG TTCTTGCCCG ACAGGGCCAC TCCATCCGGC ACATCGCCCG CACGTTGGGG GTCTCGCGCA ATACCGTGCG CCGCTACCTC 200
CGCGATCCGT CGGTAGCGCG ATACCAGCCC CGTGAACCAC GCCCCACCAA ACTGGGGCCA TTTGAATCTT ATCTGCGGCA ACGGGTCGAG CAGGCCCACC 300
CCATCTGGCT GCCTGCCACC GTCCTGAATC GGGAAATCCG CGCTCAAGGG TATGGCGGCG GTCTCTCGTT ATTGCGCGCC TTCCTCGCCA CGCTCAAGCC 400
CGCCCGCCGC GAAGCAGGTC CGGCCGTCCG TTTCGAGACC GAGCCCGGAC GGCAGTTGCA GGCTGATTTC GTGGTCTTGC GCCGGGCCAG ATCCCCCATG 500
TCGGCCTTCG TCGCCACGCT GGGATACAGC CGCATGACGT TTGTCACCTT CGTACCGGAC GAATCCTTCG AGTCCGTGCG GGACTCCCTG TTGCTGGCTT 600
TTGACTATCT GGGCGGTGTG CCCCGCGAGG TGTTGTTCGA CAACATGAAG ACCGTGGTGC TGGAACGCGA TGCCTACGGT GACGGCAAGC ACCGTTTTCA 700
CCCCGGCTTG CTTCAACTGG CCGATGACCT GGGGTTCCGG ATCCGGCTGT GTCGCCCGTA TCGGGCCCAG ACCAAAGGCA AGGTCGAGCG CTTCAATCGC 800
TACTTCCGCG AGAGCTTCTA CAACCCGTTG CTGACCCGGA TGAAGGGCAC GGGGCTGCTG CTCGATTGTG CTGCTGCCAA CCGACGCGTC CGTGACTGGT 900
TGGCAGACGA GGCGAATGTG CGGGTCCACG CCACCCTGAA CGAGCGCCCC ATCGACCGTT GGCGGCAGGA GCGGGAACAC CTGCAACCCT TGCCATCCCG 1000
TGTGCGGCGC GACGAGGCCC CCCTGCTGGA TAACAGTCTC CGCCCGGTAC CACTGGAATC TCTCCAGCAC CCACTGTCTG TCTATGACGC AATTGGGGAG 1100
GCCTGCCGAT GAACCTCCAG CATGAGCGGA TCGACGCCCT GTGCCAGCAA CTCAAACTCG AACGGGTGGC AACGCATTAC CCCGTCCTGG CGCAGCAGGC 1200
GGTGCGCGAG GACTTCAGCT TCACCGACTT CCTGGAACAC CTGTTGCGGC ATGAAGCGGG GTGTCGCCAG CAGCGCAGCC GCGAACTGCT GACGCGGATG 1300
GCTTGCTTCC CGGGCATCAA GACCCTGGAG GACTATGACT TCAGCTTCAA CCCCGGCGTG CCCAAGGCAC TGGTGCAGGA GCTGGGCAGT CTGGCGTTTG 1400
TCGAACGGGC CGAGAACGTG GTGCTGATCG GACCCTCTGG CATCGGCAAG ACCCACCTCG CCATCGCCTT GGGTTACAAG GCCGCGCAAG CCGGGGTCAA 1500
GACACGCTTC ATCACGGCAG CCGACCTGAT GCTGCAACTG AGCACGGCGC AGCGACAAGG GCGGCTGAAG GAATACTTCA ACCGCGCCAT CCTCGGTCCA 1600
CGGCTGCTGG TGATCGATGA GATCGGCTAC CTGCCTTTCG GACGCGAGGA AGCGAACCTG TTCTTTCAGG TGGTGGCGAA GCGCTATGAG AAAGGGGCGA 1700
TGATCCTGAC CTCGAACCTG CCGTTCAGCC AGTGGGCCGA CGCGTTTGCC GGCGATACCA CCCTGACAGC CGCGATGCTG GATCGGCTGC TGCACCATGC 1800
CCATATCCTG ACCCTGAGCG GCGAAAGCTA CCGCTTGAAG GACAAGAGGA AGGCGGGAGT GGTCAGGAAA AATTCCAAAC CCGAATGATC CAGGTGGGTC 1900
AGTATTACTT TGGTGATTCA GGGGTAAAGT GGGTCAGTTT TCAGTTGGTG TTGACA
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ORFs |
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Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
istA |
ISKpn7 |
87-1112 |
Transposase |
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istB |
ISKpn7 |
1109-1888 |
Accessory Gene |
ATPase Transposition Helper |
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
istA |
IstA |
ISKpn7 |
1026 |
87-1112 |
+ |
Class: | Transposase |
Function: | Transposase |
Transpoase Chemistry: | DDE |
Protein Sequence:
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MLTQEQTVEI RVLARQGHSI RHIARTLGVS RNTVRRYLRD PSVARYQPRE PRPTKLGPFE SYLRQRVEQA HPIWLPATVL NREIRAQGYG GGLSLLRAFL ATLKPARREA GPAVRFETEP GRQLQADFVV LRRARSPMSA FVATLGYSRM TFVTFVPDES FESVRDSLLL AFDYLGGVPR EVLFDNMKTV VLERDAYGDG KHRFHPGLLQ LADDLGFRIR LCRPYRAQTK GKVERFNRYF RESFYNPLLT RMKGTGLLLD CAAANRRVRD WLADEANVRV HATLNERPID RWRQEREHLQ PLPSRVRRDE APLLDNSLRP VPLESLQHPL SVYDAIGEAC R
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
istB |
IstB |
ISKpn7 |
780 |
1109-1888 |
+ |
Class: | Accessory Gene |
Sub Class: | ATPase Transposition Helper |
Comment: | ATPase |
Protein Sequence:
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MNLQHERIDA LCQQLKLERV ATHYPVLAQQ AVREDFSFTD FLEHLLRHEA GCRQQRSREL LTRMACFPGI KTLEDYDFSF NPGVPKALVQ ELGSLAFVER AENVVLIGPS GIGKTHLAIA LGYKAAQAGV KTRFITAADL MLQLSTAQRQ GRLKEYFNRA ILGPRLLVID EIGYLPFGRE EANLFFQVVA KRYEKGAMIL TSNLPFSQWA DAFAGDTTLT AAMLDRLLHH AHILTLSGES YRLKDKRKAG VVRKNSKPE
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