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Recombination Sites | |
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Internal Transposable Elements | |
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Internal Repeats | |
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References | |
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| Name: IS1353 |
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| Family: IS3 Group: IS150 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Shigella flexneri | Molecular Source: | plasmid NR1 (R100) |
| Place of Origin: | Japan | Date of Isolation: | 1950s |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 12 bp) |  | TGGGGTGCGGAC |
| IRR (Length: 13 bp) | | TGGGGGTGCGGAC |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGGGGTGCGG ACAAAATCTT GGACTACTTT AGGAGTAGTT CATGTATTCG TATGAAGATC GCCTTCGAGC CGTGAGGTTG TACCTGAAGC TTGGGCGCCG 100
GATGAGCGCC ACACTACGGC AGCTGGGATA CCCCACCAAG AACTCGCTGA AGGCCTGGTT GGCAGAATTC GAACGGAATC AGGATCTTCG CCGAGGCTAT 200
CAACGGATAA AACGGCAGTA CACCGATGAG CAAAAGCAAC GGGCAGTAGA TCACTATATC GAACAAGGCT ACTGCCTGAG TCACACAATC CGAAGCCTGG 300
GCTACCCAAG CCGCGAGGCC TTGCGTGCCT GGATCCGTGA TTTACGCCCT GAATTCGCTA GGACGGTCGT CGGCAGCAGC GCTCCCACAG TCGCCCGCTC 400
TCGCCTCGAG AAGCAGCAAG CCGTCATTGC ACTGAACCTG CGCGTAGGTT CGGCAAAGGA TGTGGCCGAC ACTGTCGGTG TATCGCGACC AACGTTGTAT 500
AACTGGCAGC ATCGATTACT TGGCAAAGTG CCCCTAAAAC CCATGACAAA GAAGAAAGGT GACACCTCGC TCGAGCAGCG GCATGAGGCA CTACTCAGGG 600
AACTGGCCGA ACTGGAGAGC CAGAACCAGC GGCTTCGCAT GGAGAATGCA ATTCTGGAGA AGGCGAGTGA ATTGATAAAA AAAGACATGG GCATCAACCC 700
CCTCGAACTG ACAAGCCGAG AAAAAACGAA GGTGGTTGAT GCCCTCAGAG TCACGTTTCC ATTAGCCAAT CTGTTGTGCG GCCTGAAGCT GGCGCGCAGC 800
ACATACTTCT ATCAACGCCT GCGGCAGACG CGGCCCGACA AGTACACGCA GGTGCGTGAG GTCATTCGGA CTATCTTCGA GGACAACTAC CGCTGCTATG 900
GCTATCGACG CATTGATAGT GCCTTGCGCC TTGGTGGCAT GCGTGTGTCC GAGAAGGTCG TGCGTCGCTT GATGGCGCAA GAGCGTCTGG TCGTGAGAAC 1000
ACCGCGCCGC CGGCGCTTCT CGGCGTATGC TGGCGACCCG ACACCAGCGG TCCCGAATCT GCTGAATCGC GACTTTCACG CGTCGGCGCC GAATACGAAA 1100
TGGTTGACCG ATCTGACGGA AATACACATT CCGGCAGGGA AGGTCTACGT CTCGCCGATC GTCGATTGCT TCGATGGGCT GGTGGTGGCC TGGAATATCG 1200
GCACCAGCCC GGATGCGAAC CTGGTCAATA CCATGCTGGA TCACGCGGTA CGGACACTGC GACCCGGTGA GCATCCGGTT ATCCATTCGG ACAGGGGCTC 1300
GCATTATCGC TGGCCTGCGT GGATCCGCCG CACTGAAAAT GCCCAATTAA CGCGGTCGAT GTCCAAAAAG GGCTGCTCGC CAGACAATGC TGCATGCGAG 1400
GGCTTTTTCG GACGATTGAA GACCGAACTA ATCTACCCGA GGAATTGGCA GCACGTGACG CTGAAAGACC TCATGACGCG AATCGATGCC TATATCCACT 1500
GGTACAACGA GCGCCGCATC AAAGTGTCGC TTGGCGGGCG TAGTCCCATC GAGTATCGTC ATGCGGTCGG ATTGATGTCC GTATAAACCG TCCAAGAAAT 1600
CGTCCGCACC CCCA
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnp |
IS1353 |
42-1586 |
Transposase |
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS1353 |
1545 |
42-1586 |
+ |
| Class: | Transposase |
| Function: | transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
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MYSYEDRLRA VRLYLKLGRR MSATLRQLGY PTKNSLKAWL AEFERNQDLR RGYQRIKRQY TDEQKQRAVD HYIEQGYCLS HTIRSLGYPS REALRAWIRD
LRPEFARTVV GSSAPTVARS RLEKQQAVIA LNLRVGSAKD VADTVGVSRP TLYNWQHRLL GKVPLKPMTK KKGDTSLEQR HEALLRELAE LESQNQRLRM
ENAILEKASE LIKKDMGINP LELTSREKTK VVDALRVTFP LANLLCGLKL ARSTYFYQRL RQTRPDKYTQ VREVIRTIFE DNYRCYGYRR IDSALRLGGM
RVSEKVVRRL MAQERLVVRT PRRRRFSAYA GDPTPAVPNL LNRDFHASAP NTKWLTDLTE IHIPAGKVYV SPIVDCFDGL VVAWNIGTSP DANLVNTMLD
HAVRTLRPGE HPVIHSDRGS HYRWPAWIRR TENAQLTRSM SKKGCSPDNA ACEGFFGRLK TELIYPRNWQ HVTLKDLMTR IDAYIHWYNE RRIKVSLGGR
SPIEYRHAVG LMSV
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